Slot: studies

Other studies this one aggregates, each a SimulationStudy in its own right — so a study-of-studies is the same class as the studies it holds, and nesting recurses to any depth without a wrapper class standing between a study and the studies it holds. A whole manuscript is then one runnable specification whose sub-studies are runnable specifications. Written as !include <path> so each sub-study keeps its own recipe file and therefore its own directory: its code_source, its results root and its relative references all resolve against where it lives, not against whoever included it. tvbo run walks the nested studies depth first, then runs the owning study’s own experiments, analyses and figures — the paper-native content belonging to no sub-study. Legitimized by COMBINE/OMEX, SED-ML and the ISA Investigation top-level container it parallels.

URI: tvbo:slot/studies

Applicable Classes

Name Description Modifies Slot
SimulationStudy no

Properties

Type and Range

Property Value
Range SimulationStudy
Domain Of SimulationStudy

Cardinality and Requirements

Property Value
Multivalued Yes

Slot Characteristics

Property Value
Owner SimulationStudy

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/tvbo

Mappings

Mapping Type Mapped Value
self tvbo:studies
native tvbo:studies

LinkML Source

name: studies
description: 'Other studies this one aggregates, each a ``SimulationStudy`` in its
  own right — so a study-of-studies is the same class as the studies it holds, and
  nesting recurses to any depth without a wrapper class standing between a study and
  the studies it holds. A whole manuscript is then one runnable specification whose
  sub-studies are runnable specifications. Written as ``!include <path>`` so each
  sub-study keeps its own recipe file and therefore its own directory: its ``code_source``,
  its results root and its relative references all resolve against where it lives,
  not against whoever included it. ``tvbo run`` walks the nested studies depth first,
  then runs the owning study''s own experiments, analyses and figures — the paper-native
  content belonging to no sub-study. Legitimized by COMBINE/OMEX, SED-ML and the ISA
  ``Investigation`` top-level container it parallels.'
from_schema: https://w3id.org/tvbo
rank: 1000
owner: SimulationStudy
domain_of:
- SimulationStudy
range: SimulationStudy
multivalued: true
inlined: true
inlined_as_list: true