Class: Electrode

Implanted DBS electrode and contact geometry.

URI: tvbo_dbs:class/Electrode

 classDiagram
    class Electrode
    click Electrode href "./Electrode.html"
      Electrode : contacts
        
          
    
        
        
        Electrode --> "*" Contact : contacts
        click Contact href "./Contact.html"
    

        
      Electrode : coordinate_space
        
          
    
        
        
        Electrode --> "0..1" CommonCoordinateSpace : coordinate_space
        click CommonCoordinateSpace href "./CommonCoordinateSpace.html"
    

        
      Electrode : electrode_id
        
          
    
        
        
        Electrode --> "0..1" String : electrode_id
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Electrode : head
        
          
    
        
        
        Electrode --> "0..1" Coordinate : head
        click Coordinate href "./Coordinate.html"
    

        
      Electrode : hemisphere
        
          
    
        
        
        Electrode --> "0..1" String : hemisphere
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Electrode : manufacturer
        
          
    
        
        
        Electrode --> "0..1" String : manufacturer
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Electrode : model
        
          
    
        
        
        Electrode --> "0..1" String : model
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Electrode : recon_path
        
          
    
        
        
        Electrode --> "0..1" String : recon_path
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Electrode : tail
        
          
    
        
        
        Electrode --> "0..1" Coordinate : tail
        click Coordinate href "./Coordinate.html"
    

        
      Electrode : target_structure
        
          
    
        
        
        Electrode --> "0..1" ParcellationEntity : target_structure
        click ParcellationEntity href "./ParcellationEntity.html"
    

        
      Electrode : trajectory
        
          
    
        
        
        Electrode --> "*" Coordinate : trajectory
        click Coordinate href "./Coordinate.html"
    

        
      

Slots

Name	Cardinality and Range	Description	Inheritance
electrode_id	0..1 xsd:string	Unique identifier for this electrode	direct
manufacturer	0..1 xsd:string		direct
model	0..1 xsd:string		direct
hemisphere	0..1 xsd:string	Hemisphere of electrode (left/right)	direct
contacts	* Contact	List of physical contacts along the electrode	direct
head	0..1 Coordinate		direct
tail	0..1 Coordinate		direct
trajectory	* Coordinate	The planned trajectory for electrode implantation	direct
target_structure	0..1 ParcellationEntity	Anatomical target structure from a brain atlas	direct
coordinate_space	0..1 CommonCoordinateSpace	Coordinate space used for implantation planning	direct
recon_path	0..1 xsd:string		direct

Usages

used by	used in	type	used
StimulationSetting	electrode_reference	range	Electrode
DBSProtocol	electrodes	range	Electrode

Identifier and Mapping Information

Schema Source

• from schema: http://www.thevirtualbrain.org/tvbo/dbs

Mappings

Mapping Type	Mapped Value
self	tvbo_dbs:Electrode
native	tvbo_dbs:Electrode

LinkML Source

Direct

name: Electrode
description: Implanted DBS electrode and contact geometry.
from_schema: http://www.thevirtualbrain.org/tvbo/dbs
attributes:
  electrode_id:
    name: electrode_id
    description: Unique identifier for this electrode
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    domain_of:
    - Electrode
    range: string
  manufacturer:
    name: manufacturer
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    domain_of:
    - Electrode
    range: string
  model:
    name: model
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    domain_of:
    - Electrode
    - SimulationExperiment
    - SimulationStudy
    range: string
  hemisphere:
    name: hemisphere
    description: Hemisphere of electrode (left/right)
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    ifabsent: left
    domain_of:
    - ParcellationEntity
    - Electrode
    range: string
  contacts:
    name: contacts
    description: List of physical contacts along the electrode
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    domain_of:
    - Electrode
    range: Contact
    multivalued: true
  head:
    name: head
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    domain_of:
    - Electrode
    range: Coordinate
  tail:
    name: tail
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    domain_of:
    - Electrode
    range: Coordinate
  trajectory:
    name: trajectory
    description: The planned trajectory for electrode implantation
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    domain_of:
    - Electrode
    range: Coordinate
    multivalued: true
  target_structure:
    name: target_structure
    description: Anatomical target structure from a brain atlas
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    domain_of:
    - Electrode
    range: ParcellationEntity
  coordinate_space:
    name: coordinate_space
    description: Coordinate space used for implantation planning
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    domain_of:
    - Dataset
    - Subject
    - Electrode
    - EField
    - SpatialDomain
    - Mesh
    range: CommonCoordinateSpace
  recon_path:
    name: recon_path
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    domain_of:
    - Electrode
    range: string

Induced

name: Electrode
description: Implanted DBS electrode and contact geometry.
from_schema: http://www.thevirtualbrain.org/tvbo/dbs
attributes:
  electrode_id:
    name: electrode_id
    description: Unique identifier for this electrode
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    alias: electrode_id
    owner: Electrode
    domain_of:
    - Electrode
    range: string
  manufacturer:
    name: manufacturer
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    alias: manufacturer
    owner: Electrode
    domain_of:
    - Electrode
    range: string
  model:
    name: model
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    alias: model
    owner: Electrode
    domain_of:
    - Electrode
    - SimulationExperiment
    - SimulationStudy
    range: string
  hemisphere:
    name: hemisphere
    description: Hemisphere of electrode (left/right)
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    ifabsent: left
    alias: hemisphere
    owner: Electrode
    domain_of:
    - ParcellationEntity
    - Electrode
    range: string
  contacts:
    name: contacts
    description: List of physical contacts along the electrode
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    alias: contacts
    owner: Electrode
    domain_of:
    - Electrode
    range: Contact
    multivalued: true
  head:
    name: head
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    alias: head
    owner: Electrode
    domain_of:
    - Electrode
    range: Coordinate
  tail:
    name: tail
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    alias: tail
    owner: Electrode
    domain_of:
    - Electrode
    range: Coordinate
  trajectory:
    name: trajectory
    description: The planned trajectory for electrode implantation
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    alias: trajectory
    owner: Electrode
    domain_of:
    - Electrode
    range: Coordinate
    multivalued: true
  target_structure:
    name: target_structure
    description: Anatomical target structure from a brain atlas
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    alias: target_structure
    owner: Electrode
    domain_of:
    - Electrode
    range: ParcellationEntity
  coordinate_space:
    name: coordinate_space
    description: Coordinate space used for implantation planning
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    alias: coordinate_space
    owner: Electrode
    domain_of:
    - Dataset
    - Subject
    - Electrode
    - EField
    - SpatialDomain
    - Mesh
    range: CommonCoordinateSpace
  recon_path:
    name: recon_path
    from_schema: http://www.thevirtualbrain.org/tvbo/dbs
    rank: 1000
    alias: recon_path
    owner: Electrode
    domain_of:
    - Electrode
    range: string