Class: SoftwarePackage

Identity and metadata for a software package, aligned with schema.org/SoftwareApplication and CodeMeta v3.

 classDiagram
    class SoftwarePackage
    click SoftwarePackage href "./SoftwarePackage.html"
      SoftwarePackage <|-- SimulationTool
        click SimulationTool href "./SimulationTool.html"
      
      SoftwarePackage : acted_on_behalf_of
        
          
    
        
        
        SoftwarePackage --> "*" SoftwarePackage : acted_on_behalf_of
        click SoftwarePackage href "./SoftwarePackage.html"
    

        
      SoftwarePackage : alternative_identifier
        
          
    
        
        
        SoftwarePackage --> "*" Uriorcurie : alternative_identifier
        click Uriorcurie href "../http://www.w3.org/2001/XMLSchema#anyURI.html"
    

        
      SoftwarePackage : description
        
          
    
        
        
        SoftwarePackage --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SoftwarePackage : doi
        
          
    
        
        
        SoftwarePackage --> "0..1" String : doi
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SoftwarePackage : ecosystem
        
          
    
        
        
        SoftwarePackage --> "*" EcosystemEnum : ecosystem
        click EcosystemEnum href "../../enums/EcosystemEnum.html"
    

        
      SoftwarePackage : homepage
        
          
    
        
        
        SoftwarePackage --> "0..1" Uri : homepage
        click Uri href "../http://www.w3.org/2001/XMLSchema#anyURI.html"
    

        
      SoftwarePackage : license
        
          
    
        
        
        SoftwarePackage --> "0..1" String : license
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SoftwarePackage : name
        
          
    
        
        
        SoftwarePackage --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SoftwarePackage : repository
        
          
    
        
        
        SoftwarePackage --> "0..1" Uri : repository
        click Uri href "../http://www.w3.org/2001/XMLSchema#anyURI.html"
    

        
      SoftwarePackage : version
        
          
    
        
        
        SoftwarePackage --> "0..1" String : version
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"

Inheritance

SoftwarePackage
- SimulationTool

Class Properties

Property	Value
Class URI	schema:SoftwareApplication

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 xsd:string	Globally unique identifier for the entity	direct
description	0..1 xsd:string		direct
homepage	0..1 xsd:anyURI	Project homepage URL	direct
license	0..1 xsd:string	SPDX license identifier (e	direct
repository	0..1 xsd:anyURI	Source code repository URL	direct
doi	0..1 xsd:string	Digital Object Identifier for the software or its reference publication	direct
version	0..1 xsd:string	Version of the package as it ran	direct
alternative_identifier	* xsd:anyURI	Further identifiers for the same package, an RRID among them (BEP028 ``Altern…	direct
acted_on_behalf_of	* SoftwarePackage	Packages whose use triggered this one, so a backend invoked through a framewo…	direct
ecosystem	* EcosystemEnum	Package ecosystem(s) through which the software is distributed	direct

Usages

used by	used in	type	used
SoftwarePackage	acted_on_behalf_of	range	SoftwarePackage
SimulationTool	acted_on_behalf_of	range	SoftwarePackage
SoftwareRequirement	package	range	SoftwarePackage
Activity	associated_with	range	SoftwarePackage
SimulationStudy	requires	range	SoftwarePackage

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/tvbo/software

Mappings

Mapping Type	Mapped Value
self	schema:SoftwareApplication
native	tvbo_sw:SoftwarePackage
close	prov:SoftwareAgent

LinkML Source

Direct

name: SoftwarePackage
description: Identity and metadata for a software package, aligned with schema.org/SoftwareApplication
  and CodeMeta v3.
from_schema: https://w3id.org/tvbo/software
close_mappings:
- prov:SoftwareAgent
slots:
- name
attributes:
  description:
    name: description
    from_schema: https://w3id.org/tvbo/software
    slot_uri: dcterms:description
    domain_of:
    - CommonCoordinateSpace
    - Dataset
    - StudyLayout
    - StudyTemplate
    - StudyDirectory
    - StudyFile
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Figure
    - Panel
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - ResultEntity
    - Activity
    - Phenotype
    - MeasureSpec
    - NamedArray
    - Network
    - GraphGenerator
    - ProcedureStep
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - AlgorithmStage
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - Study
    - ResultBinding
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    - Reducer
    range: string
  homepage:
    name: homepage
    description: Project homepage URL.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:url
    domain_of:
    - SoftwarePackage
    range: uri
  license:
    name: license
    description: SPDX license identifier (e.g., MIT, GPL-3.0-only).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: dcterms:license
    domain_of:
    - CommonCoordinateSpace
    - SoftwarePackage
    - SoftwareRequirement
    - Provenance
    range: string
  repository:
    name: repository
    description: Source code repository URL.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:codeRepository
    domain_of:
    - SoftwarePackage
    range: uri
  doi:
    name: doi
    description: Digital Object Identifier for the software or its reference publication.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: bibo:doi
    domain_of:
    - SoftwarePackage
    - Study
    range: string
  version:
    name: version
    description: Version of the package as it ran. Required by BEP028's software record,
      where a provenance claim without a version is unverifiable.
    from_schema: https://w3id.org/tvbo/software
    slot_uri: schema:softwareVersion
    domain_of:
    - ClinicalScale
    - SoftwarePackage
    - SimulationTool
    - SoftwareRequirement
    - SoftwareEnvironment
    range: string
  alternative_identifier:
    name: alternative_identifier
    description: Further identifiers for the same package, an RRID among them (BEP028
      ``AlternativeIdentifier``).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    domain_of:
    - SoftwarePackage
    range: uriorcurie
    multivalued: true
  acted_on_behalf_of:
    name: acted_on_behalf_of
    description: Packages whose use triggered this one, so a backend invoked through
      a framework records the chain rather than only the innermost caller.
    from_schema: https://w3id.org/tvbo/software
    exact_mappings:
    - prov:actedOnBehalfOf
    rank: 1000
    domain_of:
    - SoftwarePackage
    range: SoftwarePackage
    multivalued: true
    inlined: false
  ecosystem:
    name: ecosystem
    description: Package ecosystem(s) through which the software is distributed.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    domain_of:
    - SoftwarePackage
    range: EcosystemEnum
    multivalued: true
class_uri: schema:SoftwareApplication

Induced

name: SoftwarePackage
description: Identity and metadata for a software package, aligned with schema.org/SoftwareApplication
  and CodeMeta v3.
from_schema: https://w3id.org/tvbo/software
close_mappings:
- prov:SoftwareAgent
attributes:
  description:
    name: description
    from_schema: https://w3id.org/tvbo/software
    slot_uri: dcterms:description
    owner: SoftwarePackage
    domain_of:
    - CommonCoordinateSpace
    - Dataset
    - StudyLayout
    - StudyTemplate
    - StudyDirectory
    - StudyFile
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Figure
    - Panel
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - ResultEntity
    - Activity
    - Phenotype
    - MeasureSpec
    - NamedArray
    - Network
    - GraphGenerator
    - ProcedureStep
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - AlgorithmStage
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - Study
    - ResultBinding
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    - Reducer
    range: string
  homepage:
    name: homepage
    description: Project homepage URL.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:url
    owner: SoftwarePackage
    domain_of:
    - SoftwarePackage
    range: uri
  license:
    name: license
    description: SPDX license identifier (e.g., MIT, GPL-3.0-only).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: dcterms:license
    owner: SoftwarePackage
    domain_of:
    - CommonCoordinateSpace
    - SoftwarePackage
    - SoftwareRequirement
    - Provenance
    range: string
  repository:
    name: repository
    description: Source code repository URL.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:codeRepository
    owner: SoftwarePackage
    domain_of:
    - SoftwarePackage
    range: uri
  doi:
    name: doi
    description: Digital Object Identifier for the software or its reference publication.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: bibo:doi
    owner: SoftwarePackage
    domain_of:
    - SoftwarePackage
    - Study
    range: string
  version:
    name: version
    description: Version of the package as it ran. Required by BEP028's software record,
      where a provenance claim without a version is unverifiable.
    from_schema: https://w3id.org/tvbo/software
    slot_uri: schema:softwareVersion
    owner: SoftwarePackage
    domain_of:
    - ClinicalScale
    - SoftwarePackage
    - SimulationTool
    - SoftwareRequirement
    - SoftwareEnvironment
    range: string
  alternative_identifier:
    name: alternative_identifier
    description: Further identifiers for the same package, an RRID among them (BEP028
      ``AlternativeIdentifier``).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    owner: SoftwarePackage
    domain_of:
    - SoftwarePackage
    range: uriorcurie
    multivalued: true
  acted_on_behalf_of:
    name: acted_on_behalf_of
    description: Packages whose use triggered this one, so a backend invoked through
      a framework records the chain rather than only the innermost caller.
    from_schema: https://w3id.org/tvbo/software
    exact_mappings:
    - prov:actedOnBehalfOf
    rank: 1000
    owner: SoftwarePackage
    domain_of:
    - SoftwarePackage
    range: SoftwarePackage
    multivalued: true
    inlined: false
  ecosystem:
    name: ecosystem
    description: Package ecosystem(s) through which the software is distributed.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    owner: SoftwarePackage
    domain_of:
    - SoftwarePackage
    range: EcosystemEnum
    multivalued: true
  name:
    name: name
    description: Globally unique identifier for the entity.
    from_schema: https://w3id.org/tvbo/common
    slot_uri: schema:name
    identifier: true
    owner: SoftwarePackage
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - StudyLayout
    - StudyTemplate
    - StudyDirectory
    - StudyFile
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Figure
    - Event
    - Tractogram
    - ResultEntity
    - Activity
    - CachedArray
    - MeasureSpec
    - NamedArray
    - GraphGenerator
    - Binding
    - ProcedureStep
    - File
    - StateValue
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - Algorithm
    - Option
    - BranchSwitch
    - Continuation
    - Coupling
    - EnvironmentVariable
    - SchedulerDirective
    - Reducer
    range: string
    required: true
class_uri: schema:SoftwareApplication