Class: Dataset

A collection of subjects for a multi-subject study. Provides the subject/session structure needed for workflow rendering. Optionally backed by a BIDS directory layout.

URI: tvbo_study:class/Dataset

 classDiagram
    class Dataset
    click Dataset href "./Dataset.html"
      Dataset <|-- DBSDataset
        click DBSDataset href "./DBSDataset.html"
      
      Dataset : bids_root
        
          
    
        
        
        Dataset --> "0..1" String : bids_root
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dataset : conditions
        
          
    
        
        
        Dataset --> "*" String : conditions
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dataset : dataset_id
        
          
    
        
        
        Dataset --> "1" String : dataset_id
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dataset : description
        
          
    
        
        
        Dataset --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dataset : label
        
          
    
        
        
        Dataset --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dataset : reference
        
          
    
        
        
        Dataset --> "0..1" String : reference
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dataset : subjects
        
          
    
        
        
        Dataset --> "*" Subject : subjects
        click Subject href "./Subject.html"
    

        
      

Inheritance

• Dataset
  • DBSDataset

Slots

Name	Cardinality and Range	Description	Inheritance
dataset_id	1 xsd:string	Unique identifier for the dataset	direct
label	0..1 xsd:string	Human-readable dataset name	direct
description	0..1 xsd:string		direct
bids_root	0..1 xsd:string	Path to BIDS dataset root directory	direct
subjects	* Subject	Subjects in this dataset	direct
conditions	* xsd:string	Global condition labels applied across all subjects (e	direct
reference	0..1 xsd:string	DOI or citation for this dataset	direct

Usages

used by	used in	type	used
SimulationExperiment	dataset	range	Dataset

Identifier and Mapping Information

Schema Source

• from schema: http://www.thevirtualbrain.org/tvbo/study

Mappings

Mapping Type	Mapped Value
self	tvbo_study:Dataset
native	tvbo_study:Dataset

LinkML Source

Direct

name: Dataset
description: A collection of subjects for a multi-subject study. Provides the subject/session
  structure needed for workflow rendering. Optionally backed by a BIDS directory layout.
from_schema: http://www.thevirtualbrain.org/tvbo/study
slots:
- dataset_id
attributes:
  label:
    name: label
    description: Human-readable dataset name.
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    domain_of:
    - ParcellationTerminology
    - Subject
    - Session
    - Dataset
    - Contact
    - SoftwareEnvironment
    - Equation
    - Stimulus
    - Event
    - Parcellation
    - Tractogram
    - Matrix
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - FunctionCall
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - TuningObjective
    - Continuation
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  description:
    name: description
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    domain_of:
    - Dataset
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - Network
    - GraphGenerator
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  bids_root:
    name: bids_root
    description: Path to BIDS dataset root directory. When set, subject networks and
      empirical data paths are resolved relative to this root.
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    rank: 1000
    domain_of:
    - Dataset
    range: string
  subjects:
    name: subjects
    description: Subjects in this dataset.
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    rank: 1000
    domain_of:
    - Dataset
    range: Subject
    multivalued: true
    inlined: true
  conditions:
    name: conditions
    description: Global condition labels applied across all subjects (e.g., ['rest',
      'task-nback', 'task-motor']).
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    rank: 1000
    domain_of:
    - Dataset
    range: string
    multivalued: true
  reference:
    name: reference
    description: DOI or citation for this dataset.
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    rank: 1000
    domain_of:
    - Dataset
    - ClinicalScale
    - ClinicalScore
    - Tractogram
    range: string

Induced

name: Dataset
description: A collection of subjects for a multi-subject study. Provides the subject/session
  structure needed for workflow rendering. Optionally backed by a BIDS directory layout.
from_schema: http://www.thevirtualbrain.org/tvbo/study
attributes:
  label:
    name: label
    description: Human-readable dataset name.
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    alias: label
    owner: Dataset
    domain_of:
    - ParcellationTerminology
    - Subject
    - Session
    - Dataset
    - Contact
    - SoftwareEnvironment
    - Equation
    - Stimulus
    - Event
    - Parcellation
    - Tractogram
    - Matrix
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - FunctionCall
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - TuningObjective
    - Continuation
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  description:
    name: description
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    alias: description
    owner: Dataset
    domain_of:
    - Dataset
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - Network
    - GraphGenerator
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  bids_root:
    name: bids_root
    description: Path to BIDS dataset root directory. When set, subject networks and
      empirical data paths are resolved relative to this root.
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    rank: 1000
    alias: bids_root
    owner: Dataset
    domain_of:
    - Dataset
    range: string
  subjects:
    name: subjects
    description: Subjects in this dataset.
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    rank: 1000
    alias: subjects
    owner: Dataset
    domain_of:
    - Dataset
    range: Subject
    multivalued: true
    inlined: true
  conditions:
    name: conditions
    description: Global condition labels applied across all subjects (e.g., ['rest',
      'task-nback', 'task-motor']).
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    rank: 1000
    alias: conditions
    owner: Dataset
    domain_of:
    - Dataset
    range: string
    multivalued: true
  reference:
    name: reference
    description: DOI or citation for this dataset.
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    rank: 1000
    alias: reference
    owner: Dataset
    domain_of:
    - Dataset
    - ClinicalScale
    - ClinicalScore
    - Tractogram
    range: string
  dataset_id:
    name: dataset_id
    description: Unique identifier for the dataset.
    from_schema: http://www.thevirtualbrain.org/tvbo/study
    identifier: true
    alias: dataset_id
    owner: Dataset
    domain_of:
    - Dataset
    range: string
    required: true