Class: MeasureSpec

Metadata for one phenotype measure. Optional per-measure entry on Phenotype.measure_specs.

URI: tvbo:MeasureSpec

 classDiagram
    class MeasureSpec
    click MeasureSpec href "./MeasureSpec.html"
      MeasureSpec : concept_iri
        
          
    
        
        
        MeasureSpec --> "0..1" String : concept_iri
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      MeasureSpec : description
        
          
    
        
        
        MeasureSpec --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      MeasureSpec : measure_type
        
          
    
        
        
        MeasureSpec --> "0..1" String : measure_type
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      MeasureSpec : name
        
          
    
        
        
        MeasureSpec --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      MeasureSpec : task_iri
        
          
    
        
        
        MeasureSpec --> "0..1" String : task_iri
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      MeasureSpec : unit
        
          
    
        
        
        MeasureSpec --> "0..1" String : unit
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"

Class Properties

Property Value
Class URI tvbo:MeasureSpec

Slots

Name Cardinality and Range Description Inheritance
name 1
xsd:string		 Must match the measure name in Phenotype | direct | | [task_iri](../slots/task_iri.qmd) | 0..1 <br/> [xsd:string](http://www.w3.org/2001/XMLSchema#string) | Cognitive Atlas (cogat:``) IRI of the assessment instrument / task that pro… direct
concept_iri 0..1
xsd:string		 Cognitive Atlas IRI of the cognitive construct measured (e direct
unit 0..1
xsd:string		 Unit annotation (e direct
measure_type 0..1
xsd:string		 Sub-type within the phenotype (e direct
description 0..1
xsd:string		 direct

Usages

used by used in type used
Phenotype measure_specs range MeasureSpec

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/tvbo

Mappings

Mapping Type Mapped Value
self tvbo:MeasureSpec
native tvbo:MeasureSpec

LinkML Source

Direct

name: MeasureSpec
description: Metadata for one phenotype measure. Optional per-measure entry on ``Phenotype.measure_specs``.
from_schema: https://w3id.org/tvbo
attributes:
  name:
    name: name
    description: Must match the measure name in ``Phenotype.measures``.
    from_schema: https://w3id.org/tvbo
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Event
    - Tractogram
    - MeasureSpec
    - NamedArray
    - GraphGenerator
    - Binding
    - ProcedureStep
    - File
    - StateValue
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - Algorithm
    - Option
    - BranchSwitch
    - Continuation
    - Coupling
    range: string
    required: true
  task_iri:
    name: task_iri
    description: Cognitive Atlas (``cogat:``) IRI of the assessment instrument / task
      that produced this measure (e.g. ``cogat:trm_4a3fd79d09cba`` for PMAT24).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - MeasureSpec
    range: string
  concept_iri:
    name: concept_iri
    description: Cognitive Atlas IRI of the cognitive construct measured (e.g. ``cogat:trm_521ef89ce5e84``
      for fluid intelligence).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - MeasureSpec
    range: string
  unit:
    name: unit
    description: Unit annotation (e.g. 'count', 'ms', 'z-score').
    from_schema: https://w3id.org/tvbo
    domain_of:
    - CommonCoordinateSpace
    - MeasureSpec
    - NamedArray
    - Edge
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - ExplorationAxis
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: string
  measure_type:
    name: measure_type
    description: Sub-type within the phenotype (e.g. 'raw', 'unadjusted', 'age-corrected',
      'derived', 'RT', 'accuracy').
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - MeasureSpec
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Dataset
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - Phenotype
    - MeasureSpec
    - NamedArray
    - Network
    - GraphGenerator
    - ProcedureStep
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - AlgorithmStage
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - Study
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
class_uri: tvbo:MeasureSpec

Induced

name: MeasureSpec
description: Metadata for one phenotype measure. Optional per-measure entry on ``Phenotype.measure_specs``.
from_schema: https://w3id.org/tvbo
attributes:
  name:
    name: name
    description: Must match the measure name in ``Phenotype.measures``.
    from_schema: https://w3id.org/tvbo
    owner: MeasureSpec
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Event
    - Tractogram
    - MeasureSpec
    - NamedArray
    - GraphGenerator
    - Binding
    - ProcedureStep
    - File
    - StateValue
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - Algorithm
    - Option
    - BranchSwitch
    - Continuation
    - Coupling
    range: string
    required: true
  task_iri:
    name: task_iri
    description: Cognitive Atlas (``cogat:``) IRI of the assessment instrument / task
      that produced this measure (e.g. ``cogat:trm_4a3fd79d09cba`` for PMAT24).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: MeasureSpec
    domain_of:
    - MeasureSpec
    range: string
  concept_iri:
    name: concept_iri
    description: Cognitive Atlas IRI of the cognitive construct measured (e.g. ``cogat:trm_521ef89ce5e84``
      for fluid intelligence).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: MeasureSpec
    domain_of:
    - MeasureSpec
    range: string
  unit:
    name: unit
    description: Unit annotation (e.g. 'count', 'ms', 'z-score').
    from_schema: https://w3id.org/tvbo
    owner: MeasureSpec
    domain_of:
    - CommonCoordinateSpace
    - MeasureSpec
    - NamedArray
    - Edge
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - ExplorationAxis
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: string
  measure_type:
    name: measure_type
    description: Sub-type within the phenotype (e.g. 'raw', 'unadjusted', 'age-corrected',
      'derived', 'RT', 'accuracy').
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: MeasureSpec
    domain_of:
    - MeasureSpec
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    owner: MeasureSpec
    domain_of:
    - Dataset
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - Phenotype
    - MeasureSpec
    - NamedArray
    - Network
    - GraphGenerator
    - ProcedureStep
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - AlgorithmStage
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - Study
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
class_uri: tvbo:MeasureSpec