Class: Node

A node in a network with its own dynamics and properties

 classDiagram
    class Node
    click Node href "./Node.html"
      Node : description
        
          
    
        
        
        Node --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Node : dynamics
        
          
    
        
        
        Node --> "0..1" Dynamics : dynamics
        click Dynamics href "./Dynamics.html"
    

        
      Node : id
        
          
    
        
        
        Node --> "1" Integer : id
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      Node : initial_state
        
          
    
        
        
        Node --> "*" Float : initial_state
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      Node : label
        
          
    
        
        
        Node --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Node : parameters
        
          
    
        
        
        Node --> "*" Parameter : parameters
        click Parameter href "./Parameter.html"
    

        
      Node : position
        
          
    
        
        
        Node --> "0..1" Coordinate : position
        click Coordinate href "./Coordinate.html"
    

        
      Node : region
        
          
    
        
        
        Node --> "0..1" String : region
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"

Slots

Name	Cardinality and Range	Description	Inheritance
label	0..1 xsd:string		direct
description	0..1 xsd:string		direct
id	1 xsd:integer	Unique node identifier	direct
dynamics	0..1 Dynamics	Dynamics model governing this node’s behavior	direct
position	0..1 Coordinate	Spatial coordinates (x, y, z) of the node	direct
region	0..1 xsd:string	Brain region or anatomical label	direct
parameters	* Parameter	Node-specific parameter overrides	direct
initial_state	* xsd:float	Initial values for state variables	direct

Usages

used by	used in	type	used
Network	nodes	range	Node

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/tvbo

Mappings

Mapping Type	Mapped Value
self	tvbo:Node
native	tvbo:Node

LinkML Source

Direct

name: Node
description: A node in a network with its own dynamics and properties
from_schema: https://w3id.org/tvbo
slots:
- label
- description
attributes:
  id:
    name: id
    description: Unique node identifier
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Node
    - SimulationExperiment
    range: integer
    required: true
  dynamics:
    name: dynamics
    description: Dynamics model governing this node's behavior. Can be a reference
      (by name) or inline definition. If not provided, uses experiment's local_dynamics.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Node
    - SimulationExperiment
    range: Dynamics
    required: false
    inlined: false
  position:
    name: position
    description: Spatial coordinates (x, y, z) of the node
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Node
    range: Coordinate
    inlined: true
  region:
    name: region
    description: Brain region or anatomical label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Node
    - SpatialDomain
    range: string
  parameters:
    name: parameters
    description: Node-specific parameter overrides
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Equation
    - Stimulus
    - TemporalApplicableEquation
    - Node
    - Edge
    - Observation
    - Dynamics
    - Distribution
    - Noise
    - Exploration
    - Integrator
    - Coupling
    - PDE
    range: Parameter
    multivalued: true
  initial_state:
    name: initial_state
    description: Initial values for state variables
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Node
    range: float
    multivalued: true
class_uri: tvbo:Node

Induced

name: Node
description: A node in a network with its own dynamics and properties
from_schema: https://w3id.org/tvbo
attributes:
  id:
    name: id
    description: Unique node identifier
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: id
    owner: Node
    domain_of:
    - Node
    - SimulationExperiment
    range: integer
    required: true
  dynamics:
    name: dynamics
    description: Dynamics model governing this node's behavior. Can be a reference
      (by name) or inline definition. If not provided, uses experiment's local_dynamics.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: dynamics
    owner: Node
    domain_of:
    - Node
    - SimulationExperiment
    range: Dynamics
    required: false
    inlined: false
  position:
    name: position
    description: Spatial coordinates (x, y, z) of the node
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: position
    owner: Node
    domain_of:
    - Node
    range: Coordinate
    inlined: true
  region:
    name: region
    description: Brain region or anatomical label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: region
    owner: Node
    domain_of:
    - Node
    - SpatialDomain
    range: string
  parameters:
    name: parameters
    description: Node-specific parameter overrides
    from_schema: https://w3id.org/tvbo
    alias: parameters
    owner: Node
    domain_of:
    - Equation
    - Stimulus
    - TemporalApplicableEquation
    - Node
    - Edge
    - Observation
    - Dynamics
    - Distribution
    - Noise
    - Exploration
    - Integrator
    - Coupling
    - PDE
    range: Parameter
    multivalued: true
  initial_state:
    name: initial_state
    description: Initial values for state variables
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: initial_state
    owner: Node
    domain_of:
    - Node
    range: float
    multivalued: true
  label:
    name: label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: label
    owner: Node
    domain_of:
    - ParcellationTerminology
    - Dataset
    - Contact
    - Equation
    - Stimulus
    - Parcellation
    - Tractogram
    - Matrix
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - TuningObjective
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: description
    owner: Node
    domain_of:
    - ClinicalScore
    - Equation
    - Stimulus
    - Tractogram
    - Matrix
    - Network
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
class_uri: tvbo:Node