Class: Activity

One thing that was done: a solve, a fit, an analysis, a render. The PROV complement of Provenance, which describes an artifact — an artifact is prov:wasGeneratedBy an Activity, and an Activity prov:used the artifacts and environment it consumed. Slot names follow BEP028’s activity record (Id, Label, Command, AssociatedWith, Used, StartedAtTime, EndedAtTime) so a record in that vocabulary serializes to it without a translation table.

URI: prov:Activity

 classDiagram
    class Activity
    click Activity href "./Activity.html"
      Activity : associated_with
        
          
    
        
        
        Activity --> "*" SoftwarePackage : associated_with
        click SoftwarePackage href "./SoftwarePackage.html"
    

        
      Activity : command
        
          
    
        
        
        Activity --> "0..1" String : command
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Activity : description
        
          
    
        
        
        Activity --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Activity : ended_at
        
          
    
        
        
        Activity --> "0..1" String : ended_at
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Activity : iri
        
          
    
        
        
        Activity --> "0..1" Uriorcurie : iri
        click Uriorcurie href "../http://www.w3.org/2001/XMLSchema#anyURI.html"
    

        
      Activity : name
        
          
    
        
        
        Activity --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Activity : started_at
        
          
    
        
        
        Activity --> "0..1" String : started_at
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Activity : type
        
          
    
        
        
        Activity --> "*" Uriorcurie : type
        click Uriorcurie href "../http://www.w3.org/2001/XMLSchema#anyURI.html"
    

        
      Activity : used
        
          
    
        
        
        Activity --> "*" Uriorcurie : used
        click Uriorcurie href "../http://www.w3.org/2001/XMLSchema#anyURI.html"

Class Properties

Property Value
Class URI prov:Activity

Slots

Name Cardinality and Range Description Inheritance
name 1
xsd:string		 Globally unique identifier for the entity direct
description 0..1
xsd:string		 direct
iri 0..1
xsd:anyURI		 Optional stable IRI (or compact URI) for this entity in an external ontology … direct
command 0..1
xsd:string		 The command performed, parameters included direct
associated_with *
SoftwarePackage		 The software that carried the activity out (BEP028 AssociatedWith) direct
used *
xsd:anyURI		 IRIs of the inputs, outputs and environment the activity consumed (BEP028 ``U… direct
started_at 0..1
xsd:string		 ISO 8601 start time direct
ended_at 0..1
xsd:string		 ISO 8601 end time direct
type *
xsd:anyURI		 Controlled-vocabulary terms narrowing what kind of activity this was direct

Usages

used by used in type used
Provenance activities range Activity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/tvbo

Mappings

Mapping Type Mapped Value
self prov:Activity
native tvbo:Activity

LinkML Source

Direct

name: Activity
description: 'One thing that was done: a solve, a fit, an analysis, a render. The
  PROV complement of ``Provenance``, which describes an artifact — an artifact is
  ``prov:wasGeneratedBy`` an Activity, and an Activity ``prov:used`` the artifacts
  and environment it consumed. Slot names follow BEP028''s activity record (``Id``,
  ``Label``, ``Command``, ``AssociatedWith``, ``Used``, ``StartedAtTime``, ``EndedAtTime``)
  so a record in that vocabulary serializes to it without a translation table.'
from_schema: https://w3id.org/tvbo
slots:
- name
- description
- iri
attributes:
  command:
    name: command
    description: The command performed, parameters included. Null for something done
      by hand, which BEP028 reads as a manual step and asks a ``description`` for.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Activity
    range: string
  associated_with:
    name: associated_with
    description: The software that carried the activity out (BEP028 ``AssociatedWith``).
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:wasAssociatedWith
    rank: 1000
    domain_of:
    - Activity
    range: SoftwarePackage
    multivalued: true
    inlined: false
  used:
    name: used
    description: IRIs of the inputs, outputs and environment the activity consumed
      (BEP028 ``Used``).
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:used
    domain_of:
    - Layer
    - Annotation
    - Activity
    - Parameter
    - Argument
    - ResultBinding
    range: uriorcurie
    multivalued: true
  started_at:
    name: started_at
    description: ISO 8601 start time.
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:startedAtTime
    rank: 1000
    domain_of:
    - Activity
    range: string
  ended_at:
    name: ended_at
    description: ISO 8601 end time.
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:endedAtTime
    rank: 1000
    domain_of:
    - Activity
    range: string
  type:
    name: type
    description: Controlled-vocabulary terms narrowing what kind of activity this
      was.
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:type
    rank: 1000
    domain_of:
    - Activity
    - GraphGenerator
    - ProcedureStep
    - File
    - Analysis
    - Aggregation
    - TuningObjective
    - Algorithm
    - Study
    range: uriorcurie
    multivalued: true
class_uri: prov:Activity

Induced

name: Activity
description: 'One thing that was done: a solve, a fit, an analysis, a render. The
  PROV complement of ``Provenance``, which describes an artifact — an artifact is
  ``prov:wasGeneratedBy`` an Activity, and an Activity ``prov:used`` the artifacts
  and environment it consumed. Slot names follow BEP028''s activity record (``Id``,
  ``Label``, ``Command``, ``AssociatedWith``, ``Used``, ``StartedAtTime``, ``EndedAtTime``)
  so a record in that vocabulary serializes to it without a translation table.'
from_schema: https://w3id.org/tvbo
attributes:
  command:
    name: command
    description: The command performed, parameters included. Null for something done
      by hand, which BEP028 reads as a manual step and asks a ``description`` for.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    range: string
  associated_with:
    name: associated_with
    description: The software that carried the activity out (BEP028 ``AssociatedWith``).
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:wasAssociatedWith
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    range: SoftwarePackage
    multivalued: true
    inlined: false
  used:
    name: used
    description: IRIs of the inputs, outputs and environment the activity consumed
      (BEP028 ``Used``).
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:used
    owner: Activity
    domain_of:
    - Layer
    - Annotation
    - Activity
    - Parameter
    - Argument
    - ResultBinding
    range: uriorcurie
    multivalued: true
  started_at:
    name: started_at
    description: ISO 8601 start time.
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:startedAtTime
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    range: string
  ended_at:
    name: ended_at
    description: ISO 8601 end time.
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:endedAtTime
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    range: string
  type:
    name: type
    description: Controlled-vocabulary terms narrowing what kind of activity this
      was.
    from_schema: https://w3id.org/tvbo
    exact_mappings:
    - prov:type
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    - GraphGenerator
    - ProcedureStep
    - File
    - Analysis
    - Aggregation
    - TuningObjective
    - Algorithm
    - Study
    range: uriorcurie
    multivalued: true
  name:
    name: name
    description: Globally unique identifier for the entity.
    from_schema: https://w3id.org/tvbo/common
    slot_uri: schema:name
    identifier: true
    owner: Activity
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - StudyLayout
    - StudyTemplate
    - StudyDirectory
    - StudyFile
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Figure
    - Event
    - Tractogram
    - ResultEntity
    - Activity
    - CachedArray
    - MeasureSpec
    - NamedArray
    - GraphGenerator
    - Binding
    - ProcedureStep
    - File
    - StateValue
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - Algorithm
    - Option
    - BranchSwitch
    - Continuation
    - Coupling
    - EnvironmentVariable
    - SchedulerDirective
    - Reducer
    range: string
    required: true
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    slot_uri: dcterms:description
    owner: Activity
    domain_of:
    - CommonCoordinateSpace
    - Dataset
    - StudyLayout
    - StudyTemplate
    - StudyDirectory
    - StudyFile
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Figure
    - Panel
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - ResultEntity
    - Activity
    - Phenotype
    - MeasureSpec
    - NamedArray
    - Network
    - GraphGenerator
    - ProcedureStep
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - AlgorithmStage
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - Study
    - ResultBinding
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    - Reducer
    range: string
  iri:
    name: iri
    description: Optional stable IRI (or compact URI) for this entity in an external
      ontology or knowledge base. Used to load metadata from an external source; not
      required when the entity is fully self-contained (equations, parameters, etc.
      defined in the file itself).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    slot_uri: dcterms:identifier
    owner: Activity
    domain_of:
    - DataRef
    - Theme
    - Parcellation
    - Tractogram
    - ResultEntity
    - Activity
    - ReferenceFingerprint
    - GraphGenerator
    - Reference
    - Observation
    - Dynamics
    - Function
    - FunctionCall
    - Coupling
    range: uriorcurie
class_uri: prov:Activity