Class: Exploration

Parameter space exploration (grid search, sweep).

URI: tvbo:class/Exploration

 classDiagram
    class Exploration
    click Exploration href "./Exploration.html"
      Exploration : description
        
          
    
        
        
        Exploration --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Exploration : execution
        
          
    
        
        
        Exploration --> "0..1" ExecutionConfig : execution
        click ExecutionConfig href "./ExecutionConfig.html"
    

        
      Exploration : label
        
          
    
        
        
        Exploration --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Exploration : mode
        
          
    
        
        
        Exploration --> "0..1" String : mode
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Exploration : n_parallel
        
          
    
        
        
        Exploration --> "0..1" Integer : n_parallel
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      Exploration : name
        
          
    
        
        
        Exploration --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Exploration : observable
        
          
    
        
        
        Exploration --> "0..1" FunctionCall : observable
        click FunctionCall href "./FunctionCall.html"
    

        
      Exploration : parameters
        
          
    
        
        
        Exploration --> "1..*" Parameter : parameters
        click Parameter href "./Parameter.html"
    

        
      

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 xsd:string		direct
label	0..1 xsd:string		direct
description	0..1 xsd:string		direct
execution	0..1 ExecutionConfig	Per-exploration execution configuration (overrides experiment-level defaults)	direct
parameters	1..* Parameter	Parameters with domain ranges to explore (uses domain	direct
mode	0..1 xsd:string	Combination mode: ‘product’ (full grid), ‘zip’ (paired)	direct
observable	0..1 FunctionCall	Observable to compute at each point	direct
n_parallel	0..1 xsd:integer	Parallel evaluations	direct

Usages

used by	used in	type	used
SimulationExperiment	explorations	range	Exploration

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/tvbo

Mappings

Mapping Type	Mapped Value
self	tvbo:Exploration
native	tvbo:Exploration

LinkML Source

Direct

name: Exploration
description: Parameter space exploration (grid search, sweep).
from_schema: https://w3id.org/tvbo
slots:
- name
- label
- description
attributes:
  execution:
    name: execution
    description: Per-exploration execution configuration (overrides experiment-level
      defaults). Useful for setting random_seed, n_workers for parallel grid search.
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Optimization
    - Exploration
    - Algorithm
    - SimulationExperiment
    range: ExecutionConfig
    inlined: true
  parameters:
    name: parameters
    description: Parameters with domain ranges to explore (uses domain.lo, domain.hi,
      domain.n)
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Equation
    - Stimulus
    - TemporalApplicableEquation
    - Node
    - Edge
    - Observation
    - Dynamics
    - Distribution
    - Noise
    - Exploration
    - Integrator
    - Coupling
    - PDE
    range: Parameter
    required: true
    multivalued: true
    inlined: true
  mode:
    name: mode
    description: 'Combination mode: ''product'' (full grid), ''zip'' (paired)'
    from_schema: https://w3id.org/tvbo
    ifabsent: string(product)
    domain_of:
    - StimulationSetting
    - Exploration
    range: string
  observable:
    name: observable
    description: 'Observable to compute at each point. Use function: obs_name for
      simple observation, or function: func_name + arguments for FunctionCall.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Exploration
    range: FunctionCall
    inlined: true
  n_parallel:
    name: n_parallel
    description: Parallel evaluations
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: integer(1)
    domain_of:
    - Exploration
    range: integer

Induced

name: Exploration
description: Parameter space exploration (grid search, sweep).
from_schema: https://w3id.org/tvbo
attributes:
  execution:
    name: execution
    description: Per-exploration execution configuration (overrides experiment-level
      defaults). Useful for setting random_seed, n_workers for parallel grid search.
    from_schema: https://w3id.org/tvbo
    alias: execution
    owner: Exploration
    domain_of:
    - Optimization
    - Exploration
    - Algorithm
    - SimulationExperiment
    range: ExecutionConfig
    inlined: true
  parameters:
    name: parameters
    description: Parameters with domain ranges to explore (uses domain.lo, domain.hi,
      domain.n)
    from_schema: https://w3id.org/tvbo
    alias: parameters
    owner: Exploration
    domain_of:
    - Equation
    - Stimulus
    - TemporalApplicableEquation
    - Node
    - Edge
    - Observation
    - Dynamics
    - Distribution
    - Noise
    - Exploration
    - Integrator
    - Coupling
    - PDE
    range: Parameter
    required: true
    multivalued: true
    inlined: true
  mode:
    name: mode
    description: 'Combination mode: ''product'' (full grid), ''zip'' (paired)'
    from_schema: https://w3id.org/tvbo
    ifabsent: string(product)
    alias: mode
    owner: Exploration
    domain_of:
    - StimulationSetting
    - Exploration
    range: string
  observable:
    name: observable
    description: 'Observable to compute at each point. Use function: obs_name for
      simple observation, or function: func_name + arguments for FunctionCall.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: observable
    owner: Exploration
    domain_of:
    - Exploration
    range: FunctionCall
    inlined: true
  n_parallel:
    name: n_parallel
    description: Parallel evaluations
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: integer(1)
    alias: n_parallel
    owner: Exploration
    domain_of:
    - Exploration
    range: integer
  name:
    name: name
    from_schema: https://w3id.org/tvbo
    rank: 1000
    key: true
    alias: name
    owner: Exploration
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - Tractogram
    - File
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - Algorithm
    - Coupling
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    range: string
    required: true
  label:
    name: label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: label
    owner: Exploration
    domain_of:
    - ParcellationTerminology
    - Dataset
    - Contact
    - Equation
    - Stimulus
    - Parcellation
    - Tractogram
    - Matrix
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - TuningObjective
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: description
    owner: Exploration
    domain_of:
    - ClinicalScore
    - Equation
    - Stimulus
    - Tractogram
    - Matrix
    - Network
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string