Class: NamedArray

A named numeric array. Used as a sidecar slot value where a schema-typed object (e.g. ExperimentResult.parameters) holds multiple arrays addressable by name (w_LRE, w_FFI, J_i, …). The actual numeric data lives in the companion .h5 at parameters/<name>; the YAML carries only the descriptor.

URI: tvbo:NamedArray

 classDiagram
    class NamedArray
    click NamedArray href "./NamedArray.html"
      NamedArray : description
        
          
    
        
        
        NamedArray --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      NamedArray : dtype
        
          
    
        
        
        NamedArray --> "0..1" String : dtype
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      NamedArray : name
        
          
    
        
        
        NamedArray --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      NamedArray : shape
        
          
    
        
        
        NamedArray --> "*" Integer : shape
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      NamedArray : unit
        
          
    
        
        
        NamedArray --> "0..1" String : unit
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"

Class Properties

Property Value
Class URI tvbo:NamedArray

Slots

Name Cardinality and Range Description Inheritance
name 1
xsd:string		 Field name; matches the h5 dataset path under parameters/ direct
shape *
xsd:integer		 Array dimensions direct
dtype 0..1
xsd:string		 Numpy dtype string direct
unit 0..1
xsd:string		 Optional unit annotation (e direct
description 0..1
xsd:string		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/tvbo

Mappings

Mapping Type Mapped Value
self tvbo:NamedArray
native tvbo:NamedArray

LinkML Source

Direct

name: NamedArray
description: A named numeric array. Used as a sidecar slot value where a schema-typed
  object (e.g. ``ExperimentResult.parameters``) holds multiple arrays addressable
  by name (``w_LRE``, ``w_FFI``, ``J_i``, ...). The actual numeric data lives in the
  companion ``.h5`` at ``parameters/<name>``; the YAML carries only the descriptor.
from_schema: https://w3id.org/tvbo
attributes:
  name:
    name: name
    description: Field name; matches the h5 dataset path under ``parameters/``.
    from_schema: https://w3id.org/tvbo
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Event
    - Tractogram
    - MeasureSpec
    - NamedArray
    - GraphGenerator
    - Binding
    - ProcedureStep
    - File
    - StateValue
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - Algorithm
    - Option
    - BranchSwitch
    - Continuation
    - Coupling
    range: string
    required: true
  shape:
    name: shape
    description: Array dimensions.
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Matrix
    - NamedArray
    - Parameter
    - FreeParameter
    - NDArray
    range: integer
    multivalued: true
  dtype:
    name: dtype
    description: Numpy dtype string.
    from_schema: https://w3id.org/tvbo
    ifabsent: string(float32)
    domain_of:
    - Matrix
    - NamedArray
    - NDArray
    range: string
  unit:
    name: unit
    description: Optional unit annotation (e.g. 'nA').
    from_schema: https://w3id.org/tvbo
    domain_of:
    - CommonCoordinateSpace
    - MeasureSpec
    - NamedArray
    - Edge
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - ExplorationAxis
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Dataset
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - Phenotype
    - MeasureSpec
    - NamedArray
    - Network
    - GraphGenerator
    - ProcedureStep
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - AlgorithmStage
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - Study
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
class_uri: tvbo:NamedArray

Induced

name: NamedArray
description: A named numeric array. Used as a sidecar slot value where a schema-typed
  object (e.g. ``ExperimentResult.parameters``) holds multiple arrays addressable
  by name (``w_LRE``, ``w_FFI``, ``J_i``, ...). The actual numeric data lives in the
  companion ``.h5`` at ``parameters/<name>``; the YAML carries only the descriptor.
from_schema: https://w3id.org/tvbo
attributes:
  name:
    name: name
    description: Field name; matches the h5 dataset path under ``parameters/``.
    from_schema: https://w3id.org/tvbo
    owner: NamedArray
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Event
    - Tractogram
    - MeasureSpec
    - NamedArray
    - GraphGenerator
    - Binding
    - ProcedureStep
    - File
    - StateValue
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - Algorithm
    - Option
    - BranchSwitch
    - Continuation
    - Coupling
    range: string
    required: true
  shape:
    name: shape
    description: Array dimensions.
    from_schema: https://w3id.org/tvbo
    owner: NamedArray
    domain_of:
    - Matrix
    - NamedArray
    - Parameter
    - FreeParameter
    - NDArray
    range: integer
    multivalued: true
  dtype:
    name: dtype
    description: Numpy dtype string.
    from_schema: https://w3id.org/tvbo
    ifabsent: string(float32)
    owner: NamedArray
    domain_of:
    - Matrix
    - NamedArray
    - NDArray
    range: string
  unit:
    name: unit
    description: Optional unit annotation (e.g. 'nA').
    from_schema: https://w3id.org/tvbo
    owner: NamedArray
    domain_of:
    - CommonCoordinateSpace
    - MeasureSpec
    - NamedArray
    - Edge
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - ExplorationAxis
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    owner: NamedArray
    domain_of:
    - Dataset
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - Phenotype
    - MeasureSpec
    - NamedArray
    - Network
    - GraphGenerator
    - ProcedureStep
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - AlgorithmStage
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - Study
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
class_uri: tvbo:NamedArray