Class: Matrix

Adjacency matrix of a network.

URI: tvbo:class/Matrix

 classDiagram
    class Matrix
    click Matrix href "./Matrix.html"
      Matrix : dataLocation
        
          
    
        
        
        Matrix --> "0..1" String : dataLocation
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Matrix : description
        
          
    
        
        
        Matrix --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Matrix : dtype
        
          
    
        
        
        Matrix --> "0..1" String : dtype
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Matrix : format
        
          
    
        
        
        Matrix --> "0..1" SparseFormat : format
        click SparseFormat href "../../enums/SparseFormat.html"
    

        
      Matrix : label
        
          
    
        
        
        Matrix --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Matrix : shape
        
          
    
        
        
        Matrix --> "*" Integer : shape
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      Matrix : values
        
          
    
        
        
        Matrix --> "*" Float : values
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      Matrix : x
        
          
    
        
        
        Matrix --> "0..1" BrainRegionSeries : x
        click BrainRegionSeries href "./BrainRegionSeries.html"
    

        
      Matrix : y
        
          
    
        
        
        Matrix --> "0..1" BrainRegionSeries : y
        click BrainRegionSeries href "./BrainRegionSeries.html"
    

        
      

Slots

Name	Cardinality and Range	Description	Inheritance
label	0..1 xsd:string		direct
description	0..1 xsd:string		direct
dataLocation	0..1 xsd:string	Add the location of the data file containing the parcellation terminology	direct
x	0..1 BrainRegionSeries		direct
y	0..1 BrainRegionSeries		direct
values	* xsd:float		direct
format	0..1 SparseFormat	Storage format in binary companion (dense, csr, coo)	direct
shape	* xsd:integer	Matrix dimensions [N, M]	direct
dtype	0..1 xsd:string	Data type for matrix values	direct

Usages

used by	used in	type	used
Distribution	correlation	range	Matrix
TimeSeries	data	range	Matrix
TimeSeries	time	range	Matrix

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/tvbo

Mappings

Mapping Type	Mapped Value
self	tvbo:Matrix
native	tvbo:Matrix

LinkML Source

Direct

name: Matrix
description: Adjacency matrix of a network.
from_schema: https://w3id.org/tvbo
slots:
- label
- description
- dataLocation
attributes:
  x:
    name: x
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Coordinate
    - Matrix
    range: BrainRegionSeries
  y:
    name: y
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Coordinate
    - Matrix
    range: BrainRegionSeries
  values:
    name: values
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Matrix
    - BrainRegionSeries
    - SpatialField
    range: float
    multivalued: true
  format:
    name: format
    description: Storage format in binary companion (dense, csr, coo)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Matrix
    - Edge
    - DataSource
    range: SparseFormat
  shape:
    name: shape
    description: Matrix dimensions [N, M]
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Matrix
    - Parameter
    - NDArray
    range: integer
    multivalued: true
  dtype:
    name: dtype
    description: Data type for matrix values
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: string(float32)
    domain_of:
    - Matrix
    - NDArray
    range: string

Induced

name: Matrix
description: Adjacency matrix of a network.
from_schema: https://w3id.org/tvbo
attributes:
  x:
    name: x
    from_schema: https://w3id.org/tvbo
    alias: x
    owner: Matrix
    domain_of:
    - Coordinate
    - Matrix
    range: BrainRegionSeries
  y:
    name: y
    from_schema: https://w3id.org/tvbo
    alias: y
    owner: Matrix
    domain_of:
    - Coordinate
    - Matrix
    range: BrainRegionSeries
  values:
    name: values
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: values
    owner: Matrix
    domain_of:
    - Matrix
    - BrainRegionSeries
    - SpatialField
    range: float
    multivalued: true
  format:
    name: format
    description: Storage format in binary companion (dense, csr, coo)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: format
    owner: Matrix
    domain_of:
    - Matrix
    - Edge
    - DataSource
    range: SparseFormat
  shape:
    name: shape
    description: Matrix dimensions [N, M]
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: shape
    owner: Matrix
    domain_of:
    - Matrix
    - Parameter
    - NDArray
    range: integer
    multivalued: true
  dtype:
    name: dtype
    description: Data type for matrix values
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: string(float32)
    alias: dtype
    owner: Matrix
    domain_of:
    - Matrix
    - NDArray
    range: string
  label:
    name: label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: label
    owner: Matrix
    domain_of:
    - ParcellationTerminology
    - Dataset
    - Contact
    - Equation
    - Stimulus
    - Event
    - Parcellation
    - Tractogram
    - Matrix
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - FunctionCall
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - TuningObjective
    - Continuation
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: description
    owner: Matrix
    domain_of:
    - ClinicalScore
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - Network
    - GraphGenerator
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  dataLocation:
    name: dataLocation
    description: Add the location of the data file containing the parcellation terminology.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    alias: dataLocation
    owner: Matrix
    domain_of:
    - ParcellationTerminology
    - Stimulus
    - Matrix
    - RandomStream
    - RegionMapping
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - NDArray
    - Mesh
    range: string