Class: Parameter

URI: tvbo:Parameter

 classDiagram
    class Parameter
    click Parameter href "./Parameter.html"
      Parameter <|-- DerivedParameter
        click DerivedParameter href "./DerivedParameter.html"
      
      Parameter : comment
        
          
    
        
        
        Parameter --> "0..1" String : comment
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Parameter : dataset_path
        
          
    
        
        
        Parameter --> "0..1" String : dataset_path
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Parameter : default
        
          
    
        
        
        Parameter --> "0..1" String : default
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Parameter : definition
        
          
    
        
        
        Parameter --> "0..1" String : definition
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Parameter : description
        
          
    
        
        
        Parameter --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Parameter : distribution
        
          
    
        
        
        Parameter --> "0..1" Distribution : distribution
        click Distribution href "./Distribution.html"
    

        
      Parameter : domain
        
          
    
        
        
        Parameter --> "0..1" Range : domain
        click Range href "./Range.html"
    

        
      Parameter : element_domains
        
          
    
        
        
        Parameter --> "*" Range : element_domains
        click Range href "./Range.html"
    

        
      Parameter : equation
        
          
    
        
        
        Parameter --> "0..1" Equation : equation
        click Equation href "./Equation.html"
    

        
      Parameter : explored_values
        
          
    
        
        
        Parameter --> "*" Float : explored_values
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      Parameter : free
        
          
    
        
        
        Parameter --> "0..1" Boolean : free
        click Boolean href "../http://www.w3.org/2001/XMLSchema#boolean.html"
    

        
      Parameter : heterogeneous
        
          
    
        
        
        Parameter --> "0..1" Boolean : heterogeneous
        click Boolean href "../http://www.w3.org/2001/XMLSchema#boolean.html"
    

        
      Parameter : label
        
          
    
        
        
        Parameter --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Parameter : name
        
          
    
        
        
        Parameter --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Parameter : reported_optimum
        
          
    
        
        
        Parameter --> "0..1" Float : reported_optimum
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      Parameter : shape
        
          
    
        
        
        Parameter --> "0..1" String : shape
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Parameter : symbol
        
          
    
        
        
        Parameter --> "0..1" String : symbol
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Parameter : unit
        
          
    
        
        
        Parameter --> "0..1" UnitEnum : unit
        click UnitEnum href "../../enums/UnitEnum.html"
    

        
      Parameter : value
        
          
    
        
        
        Parameter --> "0..1" Float : value
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      

Inheritance

• Parameter
  • DerivedParameter

Class Properties

Property	Value
Class URI	tvbo:Parameter

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 xsd:string		direct
label	0..1 xsd:string		direct
symbol	0..1 xsd:string		direct
definition	0..1 xsd:string		direct
value	0..1 xsd:float		direct
default	0..1 xsd:string		direct
domain	0..1 Range		direct
reported_optimum	0..1 xsd:float		direct
description	0..1 xsd:string		direct
equation	0..1 Equation		direct
unit	0..1 UnitEnum	Physical unit of measurement	direct
dataset_path	0..1 xsd:string	Dataset path for array-valued parameters	direct
comment	0..1 xsd:string		direct
heterogeneous	0..1 xsd:boolean		direct
distribution	0..1 Distribution	Distribution for heterogeneous per-node parameter sampling	direct
free	0..1 xsd:boolean		direct
shape	0..1 xsd:string		direct
explored_values	* xsd:float		direct
element_domains	* Range	Per-element domain overrides for heterogeneous parameters	direct

Usages

used by	used in	type	used
StimulationSetting	amplitude	range	Parameter
StimulationSetting	frequency	range	Parameter
StimulationSetting	pulse_width	range	Parameter
Equation	parameters	range	Parameter
Stimulus	parameters	range	Parameter
Event	parameters	range	Parameter
TemporalApplicableEquation	parameters	range	Parameter
Network	parameters	range	Parameter
GraphGenerator	parameters	range	Parameter
Node	parameters	range	Parameter
Edge	parameters	range	Parameter
Observation	parameters	range	Parameter
DerivedObservation	parameters	range	Parameter
Dynamics	parameters	range	Parameter
Dynamics	coupling_terms	range	Parameter
Dynamics	local_coupling_term	range	Parameter
Distribution	parameters	range	Parameter
Noise	parameters	range	Parameter
Noise	intensity	range	Parameter
OptimizationStage	free_parameters	range	Parameter
OptimizationStage	hyperparameters	range	Parameter
OptimizationStage	freeze_parameters	range	Parameter
Optimization	free_parameters	range	Parameter
Optimization	hyperparameters	range	Parameter
Optimization	freeze_parameters	range	Parameter
Exploration	parameters	range	Parameter
UpdateRule	target_parameter	range	Parameter
AlgorithmInclude	arguments	range	Parameter
Algorithm	hyperparameters	range	Parameter
Discretization	parameters	range	Parameter
BranchSwitch	parameters	range	Parameter
Continuation	free_parameters	range	Parameter
Integrator	parameters	range	Parameter
Coupling	parameters	range	Parameter
DifferentialOperator	coefficient	range	Parameter
DifferentialOperator	tensor_coefficient	range	Parameter
PDE	parameters	range	Parameter

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/tvbo

Mappings

Mapping Type	Mapped Value
self	tvbo:Parameter
native	tvbo:Parameter

LinkML Source

Direct

name: Parameter
from_schema: https://w3id.org/tvbo
slots:
- name
- label
- symbol
- definition
- value
- default
- domain
- reported_optimum
- description
- equation
- unit
- dataset_path
attributes:
  comment:
    name: comment
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Parameter
    range: string
  heterogeneous:
    name: heterogeneous
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Parameter
    range: boolean
  distribution:
    name: distribution
    description: Distribution for heterogeneous per-node parameter sampling. Implies
      heterogeneous=true.
    from_schema: https://w3id.org/tvbo
    domain_of:
    - StateVariable
    - Parameter
    - Coupling
    range: Distribution
    inlined: true
  free:
    name: free
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Parameter
    range: boolean
  shape:
    name: shape
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Matrix
    - Parameter
    - NDArray
    range: string
  explored_values:
    name: explored_values
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Range
    - Parameter
    range: float
    multivalued: true
  element_domains:
    name: element_domains
    description: Per-element domain overrides for heterogeneous parameters. When specified,
      element_domains[i] overrides domain for element i during exploration auto-expansion.
      Length must match parameter shape (e.g., n_nodes for shape "(n_nodes,)"). If
      not set, all elements share the same domain.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Parameter
    range: Range
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: tvbo:Parameter

Induced

name: Parameter
from_schema: https://w3id.org/tvbo
attributes:
  comment:
    name: comment
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: comment
    owner: Parameter
    domain_of:
    - Parameter
    range: string
  heterogeneous:
    name: heterogeneous
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: heterogeneous
    owner: Parameter
    domain_of:
    - Parameter
    range: boolean
  distribution:
    name: distribution
    description: Distribution for heterogeneous per-node parameter sampling. Implies
      heterogeneous=true.
    from_schema: https://w3id.org/tvbo
    alias: distribution
    owner: Parameter
    domain_of:
    - StateVariable
    - Parameter
    - Coupling
    range: Distribution
    inlined: true
  free:
    name: free
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: free
    owner: Parameter
    domain_of:
    - Parameter
    range: boolean
  shape:
    name: shape
    from_schema: https://w3id.org/tvbo
    alias: shape
    owner: Parameter
    domain_of:
    - Matrix
    - Parameter
    - NDArray
    range: string
  explored_values:
    name: explored_values
    from_schema: https://w3id.org/tvbo
    alias: explored_values
    owner: Parameter
    domain_of:
    - Range
    - Parameter
    range: float
    multivalued: true
  element_domains:
    name: element_domains
    description: Per-element domain overrides for heterogeneous parameters. When specified,
      element_domains[i] overrides domain for element i during exploration auto-expansion.
      Length must match parameter shape (e.g., n_nodes for shape "(n_nodes,)"). If
      not set, all elements share the same domain.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: element_domains
    owner: Parameter
    domain_of:
    - Parameter
    range: Range
    multivalued: true
    inlined: true
    inlined_as_list: true
  name:
    name: name
    from_schema: https://w3id.org/tvbo
    rank: 1000
    key: true
    alias: name
    owner: Parameter
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - Event
    - Tractogram
    - GraphGenerator
    - File
    - StateValue
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - Algorithm
    - Option
    - BranchSwitch
    - Continuation
    - Coupling
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    range: string
    required: true
  label:
    name: label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: label
    owner: Parameter
    domain_of:
    - ParcellationTerminology
    - Dataset
    - Contact
    - Equation
    - Stimulus
    - Event
    - Parcellation
    - Tractogram
    - Matrix
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - FunctionCall
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - TuningObjective
    - Continuation
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  symbol:
    name: symbol
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: symbol
    owner: Parameter
    domain_of:
    - StateVariable
    - Parameter
    - DerivedParameter
    - DerivedVariable
    range: string
  definition:
    name: definition
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: definition
    owner: Parameter
    domain_of:
    - Equation
    - StateVariable
    - Parameter
    - Function
    - DifferentialOperator
    range: string
  value:
    name: value
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: value
    owner: Parameter
    domain_of:
    - StateValue
    - Parameter
    - Argument
    - Option
    - BoundaryCondition
    range: float
  default:
    name: default
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: default
    owner: Parameter
    domain_of:
    - Parameter
    range: string
  domain:
    name: domain
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: domain
    owner: Parameter
    domain_of:
    - ClinicalScale
    - ClinicalScore
    - StateVariable
    - Distribution
    - Parameter
    - PDE
    range: Range
  reported_optimum:
    name: reported_optimum
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: reported_optimum
    owner: Parameter
    domain_of:
    - Parameter
    range: float
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: description
    owner: Parameter
    domain_of:
    - ClinicalScore
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - Network
    - GraphGenerator
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  equation:
    name: equation
    from_schema: https://w3id.org/tvbo
    rank: 1000
    slot_uri: tvbo:Equation
    alias: equation
    owner: Parameter
    domain_of:
    - Stimulus
    - Event
    - Observation
    - StateVariable
    - Parameter
    - Function
    - FunctionCall
    - Case
    - DerivedParameter
    - DerivedVariable
    - Noise
    - UpdateRule
    - DifferentialOperator
    range: Equation
    inlined: true
  unit:
    name: unit
    description: Physical unit of measurement. Values are drawn from the QUDT ontology
      (http://qudt.org/vocab/unit/) with UO cross-references where available.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: unit
    owner: Parameter
    domain_of:
    - CommonCoordinateSpace
    - Edge
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: UnitEnum
  dataset_path:
    name: dataset_path
    description: Dataset path for array-valued parameters. When set, the parameter
      value is stored in the binary companion file (HDF5 or Zarr) at this path. The
      value slot is omitted.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: dataset_path
    owner: Parameter
    domain_of:
    - Parameter
    range: string
class_uri: tvbo:Parameter