Class: CommonCoordinateSpace

A schema for representing a version of a common coordinate space.

URI: atom:atlas/Transformation

 classDiagram
    class CommonCoordinateSpace
    click CommonCoordinateSpace href "./CommonCoordinateSpace.html"
      CommonCoordinateSpace : abbreviation
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : abbreviation
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : anatomicalAxesOrientation
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : anatomicalAxesOrientation
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : axesOrigin
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : axesOrigin
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : defaultImage
        
          
    
        
        
        CommonCoordinateSpace --> "*" String : defaultImage
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : license
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : license
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : name
        
          
    
        
        
        CommonCoordinateSpace --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : nativeUnit
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : nativeUnit
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : unit
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : unit
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 xsd:string		direct
abbreviation	0..1 xsd:string	Slot for the abbreviation of a resource	direct
unit	0..1 xsd:string		direct
license	0..1 xsd:string	Linked type for the license of the brain atlas or coordinate space version	direct
anatomicalAxesOrientation	0..1 xsd:string	Add the axes orientation in standard anatomical terms (XYZ)	direct
axesOrigin	0..1 xsd:string	Enter the origin (central point where all axes intersect)	direct
nativeUnit	0..1 xsd:string	Add the native unit that is used for this common coordinate space version	direct
defaultImage	* xsd:string	Add all image files used as visual representation of this common coordinate s…	direct

Usages

used by	used in	type	used
Coordinate	coordinateSpace	range	CommonCoordinateSpace
BrainAtlas	coordinateSpace	range	CommonCoordinateSpace
Dataset	coordinate_space	range	CommonCoordinateSpace
Subject	coordinate_space	range	CommonCoordinateSpace
Electrode	coordinate_space	range	CommonCoordinateSpace
EField	coordinate_space	range	CommonCoordinateSpace
SpatialDomain	coordinate_space	range	CommonCoordinateSpace
Mesh	coordinate_space	range	CommonCoordinateSpace

Identifier and Mapping Information

Schema Source

• from schema: https://openminds.ebrains.eu/sands/BrainAtlas

Mappings

Mapping Type	Mapped Value
self	atom:atlas/Transformation
native	atom:CommonCoordinateSpace

LinkML Source

Direct

name: CommonCoordinateSpace
description: A schema for representing a version of a common coordinate space.
from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
slots:
- name
- abbreviation
- unit
- license
attributes:
  anatomicalAxesOrientation:
    name: anatomicalAxesOrientation
    description: Add the axes orientation in standard anatomical terms (XYZ).
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - CommonCoordinateSpace
    range: string
  axesOrigin:
    name: axesOrigin
    description: Enter the origin (central point where all axes intersect).
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - CommonCoordinateSpace
    range: string
  nativeUnit:
    name: nativeUnit
    description: Add the native unit that is used for this common coordinate space
      version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - CommonCoordinateSpace
    range: string
  defaultImage:
    name: defaultImage
    description: Add all image files used as visual representation of this common
      coordinate space version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - CommonCoordinateSpace
    range: string
    multivalued: true
class_uri: atom:atlas/Transformation

Induced

name: CommonCoordinateSpace
description: A schema for representing a version of a common coordinate space.
from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
attributes:
  anatomicalAxesOrientation:
    name: anatomicalAxesOrientation
    description: Add the axes orientation in standard anatomical terms (XYZ).
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    alias: anatomicalAxesOrientation
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    range: string
  axesOrigin:
    name: axesOrigin
    description: Enter the origin (central point where all axes intersect).
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    alias: axesOrigin
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    range: string
  nativeUnit:
    name: nativeUnit
    description: Add the native unit that is used for this common coordinate space
      version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    alias: nativeUnit
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    range: string
  defaultImage:
    name: defaultImage
    description: Add all image files used as visual representation of this common
      coordinate space version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    alias: defaultImage
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    range: string
    multivalued: true
  name:
    name: name
    from_schema: https://w3id.org/tvbo
    rank: 1000
    key: true
    alias: name
    owner: CommonCoordinateSpace
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - Tractogram
    - File
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - Algorithm
    - Coupling
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    range: string
    required: true
  abbreviation:
    name: abbreviation
    description: Slot for the abbreviation of a resource.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    alias: abbreviation
    owner: CommonCoordinateSpace
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    range: string
  unit:
    name: unit
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: unit
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: string
  license:
    name: license
    description: Linked type for the license of the brain atlas or coordinate space
      version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    alias: license
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    - SoftwareRequirement
    - SoftwarePackage
    range: string
class_uri: atom:atlas/Transformation