Class: CommonCoordinateSpace

A schema for representing a version of a common coordinate space.

URI: atom:atlas/Transformation

 classDiagram
    class CommonCoordinateSpace
    click CommonCoordinateSpace href "./CommonCoordinateSpace.html"
      CommonCoordinateSpace : abbreviation
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : abbreviation
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : alternateName
        
          
    
        
        
        CommonCoordinateSpace --> "*" String : alternateName
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : anatomicalAxesOrientation
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : anatomicalAxesOrientation
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : axesOrigin
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : axesOrigin
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : defaultImage
        
          
    
        
        
        CommonCoordinateSpace --> "*" String : defaultImage
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : description
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : license
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : license
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : name
        
          
    
        
        
        CommonCoordinateSpace --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : nativeUnit
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : nativeUnit
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      CommonCoordinateSpace : unit
        
          
    
        
        
        CommonCoordinateSpace --> "0..1" String : unit
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"

Class Properties

Property Value
Class URI atom:atlas/Transformation

Slots

Name Cardinality and Range Description Inheritance
name 1
xsd:string		 Globally unique identifier for the entity direct
abbreviation 0..1
xsd:string		 Slot for the abbreviation of a resource direct
alternateName *
xsd:string		 Enter any alternate names, including abbreviations, for this entity direct
description 0..1
xsd:string		 direct
unit 0..1
xsd:string or 
UnitEnum		 Physical unit of measurement direct
license 0..1
xsd:string		 Linked type for the license of the brain atlas or coordinate space version direct
anatomicalAxesOrientation 0..1
xsd:string		 Add the axes orientation in standard anatomical terms (XYZ) direct
axesOrigin 0..1
xsd:string		 Enter the origin (central point where all axes intersect) direct
nativeUnit 0..1
xsd:string		 Add the native unit that is used for this common coordinate space version direct
defaultImage *
xsd:string		 Add all image files used as visual representation of this common coordinate s… direct

Usages

used by used in type used
Coordinate coordinateSpace range CommonCoordinateSpace
BrainAtlas coordinateSpace range CommonCoordinateSpace
DBSDataset coordinate_space range CommonCoordinateSpace
DBSSubject coordinate_space range CommonCoordinateSpace
Electrode coordinate_space range CommonCoordinateSpace
EField coordinate_space range CommonCoordinateSpace
Network coordinate_space range CommonCoordinateSpace
SpatialDomain coordinate_space range CommonCoordinateSpace
Mesh coordinate_space range CommonCoordinateSpace

Identifier and Mapping Information

Schema Source

  • from schema: https://openminds.ebrains.eu/sands/BrainAtlas

Mappings

Mapping Type Mapped Value
self atom:atlas/Transformation
native atom:CommonCoordinateSpace

LinkML Source

Direct

name: CommonCoordinateSpace
description: A schema for representing a version of a common coordinate space.
from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
slots:
- name
- abbreviation
- alternateName
- description
- unit
- license
attributes:
  anatomicalAxesOrientation:
    name: anatomicalAxesOrientation
    description: Add the axes orientation in standard anatomical terms (XYZ).
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - CommonCoordinateSpace
    range: string
  axesOrigin:
    name: axesOrigin
    description: Enter the origin (central point where all axes intersect).
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - CommonCoordinateSpace
    range: string
  nativeUnit:
    name: nativeUnit
    description: Add the native unit that is used for this common coordinate space
      version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - CommonCoordinateSpace
    range: string
  defaultImage:
    name: defaultImage
    description: Add all image files used as visual representation of this common
      coordinate space version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - CommonCoordinateSpace
    range: string
    multivalued: true
class_uri: atom:atlas/Transformation

Induced

name: CommonCoordinateSpace
description: A schema for representing a version of a common coordinate space.
from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
attributes:
  anatomicalAxesOrientation:
    name: anatomicalAxesOrientation
    description: Add the axes orientation in standard anatomical terms (XYZ).
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    range: string
  axesOrigin:
    name: axesOrigin
    description: Enter the origin (central point where all axes intersect).
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    range: string
  nativeUnit:
    name: nativeUnit
    description: Add the native unit that is used for this common coordinate space
      version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    range: string
  defaultImage:
    name: defaultImage
    description: Add all image files used as visual representation of this common
      coordinate space version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    range: string
    multivalued: true
  name:
    name: name
    description: Globally unique identifier for the entity.
    from_schema: https://w3id.org/tvbo/common
    slot_uri: schema:name
    identifier: true
    owner: CommonCoordinateSpace
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - StudyLayout
    - StudyTemplate
    - StudyDirectory
    - StudyFile
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Figure
    - Event
    - Tractogram
    - ResultEntity
    - Activity
    - CachedArray
    - MeasureSpec
    - NamedArray
    - GraphGenerator
    - Binding
    - ProcedureStep
    - File
    - StateValue
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - Algorithm
    - Option
    - BranchSwitch
    - Continuation
    - Coupling
    - EnvironmentVariable
    - SchedulerDirective
    - Reducer
    range: string
    required: true
  abbreviation:
    name: abbreviation
    description: Slot for the abbreviation of a resource.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    slot_uri: skos:notation
    owner: CommonCoordinateSpace
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    range: string
  alternateName:
    name: alternateName
    description: Enter any alternate names, including abbreviations, for this entity.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    slot_uri: atom:atlas/hasName
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    - ParcellationEntity
    - Node
    range: string
    multivalued: true
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    slot_uri: dcterms:description
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    - Dataset
    - StudyLayout
    - StudyTemplate
    - StudyDirectory
    - StudyFile
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Figure
    - Panel
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - ResultEntity
    - Activity
    - Phenotype
    - MeasureSpec
    - NamedArray
    - Network
    - GraphGenerator
    - ProcedureStep
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - AlgorithmStage
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - Study
    - ResultBinding
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    - Reducer
    range: string
  unit:
    name: unit
    description: 'Physical unit of measurement. `UnitEnum` is the curated vocabulary
      — each of its values is vendored from QUDT (`ontology/tvb-o-units.ttl`) and
      can be reasoned about dimensionally. The range is deliberately open beyond it:
      a unit nobody has curated yet is recorded as written and reported `uncurated`,
      because a closed range forces the author to either misdeclare the quantity or
      leave it undeclared, and both lose more than an unrecognised string does. An
      uncurated unit carries no dimensional claim, so a check involving it reports
      `underdetermined` rather than guessing. Promote one with `tvbo units add <unit>`,
      which pulls its QUDT record into the vendored module — so every unit TVBO *reasons*
      about stays authoritative, and only what it *records* is open.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    slot_uri: qudt:unit
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    - ToolUnit
    - MeasureSpec
    - NamedArray
    - Edge
    - Observation
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - ExplorationAxis
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: string
    any_of:
    - range: UnitEnum
    - range: string
  license:
    name: license
    description: Linked type for the license of the brain atlas or coordinate space
      version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    slot_uri: dcterms:license
    owner: CommonCoordinateSpace
    domain_of:
    - CommonCoordinateSpace
    - SoftwarePackage
    - SoftwareRequirement
    - Provenance
    range: string
class_uri: atom:atlas/Transformation