Class: SimulationTool

A software tool for computational neuroscience simulation, analysis, or model specification. Extends SoftwarePackage with neuroscience-specific controlled vocabularies for scale, paradigm, role, and interoperability. Aligned with CodeMeta v3 and DOAP.

URI: schema:SoftwareApplication

 classDiagram
    class SimulationTool
    click SimulationTool href "./SimulationTool.html"
      SoftwarePackage <|-- SimulationTool
        click SoftwarePackage href "./SoftwarePackage.html"
      
      SimulationTool : application_category
        
          
    
        
        
        SimulationTool --> "0..1" String : application_category
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : author
        
          
    
        
        
        SimulationTool --> "*" String : author
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : citation
        
          
    
        
        
        SimulationTool --> "*" String : citation
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : date_created
        
          
    
        
        
        SimulationTool --> "0..1" Date : date_created
        click Date href "../http://www.w3.org/2001/XMLSchema#date.html"
    

        
      SimulationTool : date_modified
        
          
    
        
        
        SimulationTool --> "0..1" Date : date_modified
        click Date href "../http://www.w3.org/2001/XMLSchema#date.html"
    

        
      SimulationTool : description
        
          
    
        
        
        SimulationTool --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : development_status
        
          
    
        
        
        SimulationTool --> "0..1" DevelopmentStatus : development_status
        click DevelopmentStatus href "../../enums/DevelopmentStatus.html"
    

        
      SimulationTool : doi
        
          
    
        
        
        SimulationTool --> "0..1" String : doi
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : ecosystem
        
          
    
        
        
        SimulationTool --> "*" EcosystemEnum : ecosystem
        click EcosystemEnum href "../../enums/EcosystemEnum.html"
    

        
      SimulationTool : funder
        
          
    
        
        
        SimulationTool --> "*" String : funder
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : homepage
        
          
    
        
        
        SimulationTool --> "0..1" Uri : homepage
        click Uri href "../http://www.w3.org/2001/XMLSchema#anyURI.html"
    

        
      SimulationTool : interoperates_with
        
          
    
        
        
        SimulationTool --> "*" SimulationTool : interoperates_with
        click SimulationTool href "./SimulationTool.html"
    

        
      SimulationTool : is_accessible_for_free
        
          
    
        
        
        SimulationTool --> "0..1" Boolean : is_accessible_for_free
        click Boolean href "../http://www.w3.org/2001/XMLSchema#boolean.html"
    

        
      SimulationTool : issue_tracker
        
          
    
        
        
        SimulationTool --> "0..1" Uri : issue_tracker
        click Uri href "../http://www.w3.org/2001/XMLSchema#anyURI.html"
    

        
      SimulationTool : keywords
        
          
    
        
        
        SimulationTool --> "*" String : keywords
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : license
        
          
    
        
        
        SimulationTool --> "0..1" String : license
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : maintainer
        
          
    
        
        
        SimulationTool --> "*" String : maintainer
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : model_paradigm
        
          
    
        
        
        SimulationTool --> "*" ModelParadigm : model_paradigm
        click ModelParadigm href "../../enums/ModelParadigm.html"
    

        
      SimulationTool : name
        
          
    
        
        
        SimulationTool --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : operating_system
        
          
    
        
        
        SimulationTool --> "*" String : operating_system
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : programming_language
        
          
    
        
        
        SimulationTool --> "*" ProgrammingLanguageEnum : programming_language
        click ProgrammingLanguageEnum href "../../enums/ProgrammingLanguageEnum.html"
    

        
      SimulationTool : reference_publication
        
          
    
        
        
        SimulationTool --> "0..1" String : reference_publication
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : repository
        
          
    
        
        
        SimulationTool --> "0..1" Uri : repository
        click Uri href "../http://www.w3.org/2001/XMLSchema#anyURI.html"
    

        
      SimulationTool : runtime_platform
        
          
    
        
        
        SimulationTool --> "*" String : runtime_platform
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      SimulationTool : same_as
        
          
    
        
        
        SimulationTool --> "*" Uri : same_as
        click Uri href "../http://www.w3.org/2001/XMLSchema#anyURI.html"
    

        
      SimulationTool : scale
        
          
    
        
        
        SimulationTool --> "*" SimulationScale : scale
        click SimulationScale href "../../enums/SimulationScale.html"
    

        
      SimulationTool : tool_role
        
          
    
        
        
        SimulationTool --> "*" ToolRole : tool_role
        click ToolRole href "../../enums/ToolRole.html"
    

        
      SimulationTool : version
        
          
    
        
        
        SimulationTool --> "0..1" String : version
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      

Inheritance

• SoftwarePackage
  • SimulationTool

Class Properties

Property	Value
Class URI	schema:SoftwareApplication

Slots

Name	Cardinality and Range	Description	Inheritance
application_category	0..1 xsd:string	High-level category (e	direct
scale	* SimulationScale	Spatial/organizational scales the tool operates at	direct
model_paradigm	* ModelParadigm	Computational paradigms supported	direct
tool_role	* ToolRole	Primary function(s) in a simulation workflow	direct
programming_language	* ProgrammingLanguageEnum	Implementation languages	direct
runtime_platform	* xsd:string	Execution backends or platforms (e	direct
operating_system	* xsd:string	Supported operating systems (e	direct
interoperates_with	* SimulationTool	Tools this tool can exchange data with or delegate to	direct
version	0..1 xsd:string	Current or latest stable version string	direct
date_created	0..1 xsd:date	Date the software was first released (YYYY-MM-DD)	direct
date_modified	0..1 xsd:date	Date of the most recent release or significant update	direct
development_status	0..1 DevelopmentStatus	Development status (repostatus	direct
author	* xsd:string	Original author(s) or creating organization(s)	direct
maintainer	* xsd:string	Current maintainer(s) or responsible organization(s)	direct
funder	* xsd:string	Funding bodies or grants (e	direct
reference_publication	0..1 xsd:string	DOI of the primary reference publication for this tool	direct
citation	* xsd:string	Additional citation strings or DOIs	direct
keywords	* xsd:string	Tags for topic-based discovery and clustering	direct
same_as	* xsd:anyURI	URIs that unambiguously identify this tool (Wikidata, bio	direct
issue_tracker	0..1 xsd:anyURI	URL of the bug tracker or issue board	direct
is_accessible_for_free	0..1 xsd:boolean	Whether the tool is free/open-source	direct
name	1 xsd:string		SoftwarePackage
description	0..1 xsd:string		SoftwarePackage
homepage	0..1 xsd:anyURI	Project homepage URL	SoftwarePackage
license	0..1 xsd:string	SPDX license identifier (e	SoftwarePackage
repository	0..1 xsd:anyURI	Source code repository URL	SoftwarePackage
doi	0..1 xsd:string	Digital Object Identifier for the software or its reference publication	SoftwarePackage
ecosystem	* EcosystemEnum	Package ecosystem(s) through which the software is distributed	SoftwarePackage

Usages

used by	used in	type	used
SimulationTool	interoperates_with	range	SimulationTool

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/tvbo/software

Mappings

Mapping Type	Mapped Value
self	schema:SoftwareApplication
native	tvbo_sw:SimulationTool

LinkML Source

Direct

name: SimulationTool
description: A software tool for computational neuroscience simulation, analysis,
  or model specification. Extends SoftwarePackage with neuroscience-specific controlled
  vocabularies for scale, paradigm, role, and interoperability. Aligned with CodeMeta
  v3 and DOAP.
from_schema: https://w3id.org/tvbo/software
is_a: SoftwarePackage
attributes:
  application_category:
    name: application_category
    description: High-level category (e.g., simulation, analysis, specification).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:applicationCategory
    domain_of:
    - SimulationTool
    range: string
  scale:
    name: scale
    description: Spatial/organizational scales the tool operates at.
    from_schema: https://w3id.org/tvbo/software
    domain_of:
    - ClinicalScore
    - SimulationTool
    - BidsEntities
    range: SimulationScale
    multivalued: true
  model_paradigm:
    name: model_paradigm
    description: Computational paradigms supported.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    domain_of:
    - SimulationTool
    range: ModelParadigm
    multivalued: true
  tool_role:
    name: tool_role
    description: Primary function(s) in a simulation workflow.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    domain_of:
    - SimulationTool
    range: ToolRole
    multivalued: true
  programming_language:
    name: programming_language
    description: Implementation languages.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:programmingLanguage
    domain_of:
    - SimulationTool
    range: ProgrammingLanguageEnum
    multivalued: true
  runtime_platform:
    name: runtime_platform
    description: Execution backends or platforms (e.g., MPI, OpenMP, CUDA, JAX).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:runtimePlatform
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  operating_system:
    name: operating_system
    description: Supported operating systems (e.g., Linux, macOS, Windows).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:operatingSystem
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  interoperates_with:
    name: interoperates_with
    description: Tools this tool can exchange data with or delegate to.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    domain_of:
    - SimulationTool
    range: SimulationTool
    multivalued: true
  version:
    name: version
    description: Current or latest stable version string.
    from_schema: https://w3id.org/tvbo/software
    slot_uri: schema:softwareVersion
    domain_of:
    - ClinicalScale
    - SimulationTool
    - SoftwareRequirement
    - SoftwareEnvironment
    range: string
  date_created:
    name: date_created
    description: Date the software was first released (YYYY-MM-DD).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:dateCreated
    domain_of:
    - SimulationTool
    - Provenance
    range: date
  date_modified:
    name: date_modified
    description: Date of the most recent release or significant update.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:dateModified
    domain_of:
    - SimulationTool
    range: date
  development_status:
    name: development_status
    description: Development status (repostatus.org aligned).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    domain_of:
    - SimulationTool
    range: DevelopmentStatus
  author:
    name: author
    description: Original author(s) or creating organization(s).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:author
    domain_of:
    - BrainAtlas
    - SimulationTool
    range: string
    multivalued: true
  maintainer:
    name: maintainer
    description: Current maintainer(s) or responsible organization(s).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:maintainer
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  funder:
    name: funder
    description: Funding bodies or grants (e.g., 'EU H2020 945539', 'NIH R01...').
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:funder
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  reference_publication:
    name: reference_publication
    description: DOI of the primary reference publication for this tool.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    domain_of:
    - SimulationTool
    range: string
  citation:
    name: citation
    description: Additional citation strings or DOIs.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:citation
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  keywords:
    name: keywords
    description: Tags for topic-based discovery and clustering.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:keywords
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  same_as:
    name: same_as
    description: URIs that unambiguously identify this tool (Wikidata, bio.tools,
      RRID, SciCrunch).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:sameAs
    domain_of:
    - SimulationTool
    range: uri
    multivalued: true
  issue_tracker:
    name: issue_tracker
    description: URL of the bug tracker or issue board.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    domain_of:
    - SimulationTool
    range: uri
  is_accessible_for_free:
    name: is_accessible_for_free
    description: Whether the tool is free/open-source.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:isAccessibleForFree
    ifabsent: 'True'
    domain_of:
    - SimulationTool
    range: boolean
class_uri: schema:SoftwareApplication

Induced

name: SimulationTool
description: A software tool for computational neuroscience simulation, analysis,
  or model specification. Extends SoftwarePackage with neuroscience-specific controlled
  vocabularies for scale, paradigm, role, and interoperability. Aligned with CodeMeta
  v3 and DOAP.
from_schema: https://w3id.org/tvbo/software
is_a: SoftwarePackage
attributes:
  application_category:
    name: application_category
    description: High-level category (e.g., simulation, analysis, specification).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:applicationCategory
    alias: application_category
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: string
  scale:
    name: scale
    description: Spatial/organizational scales the tool operates at.
    from_schema: https://w3id.org/tvbo/software
    alias: scale
    owner: SimulationTool
    domain_of:
    - ClinicalScore
    - SimulationTool
    - BidsEntities
    range: SimulationScale
    multivalued: true
  model_paradigm:
    name: model_paradigm
    description: Computational paradigms supported.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    alias: model_paradigm
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: ModelParadigm
    multivalued: true
  tool_role:
    name: tool_role
    description: Primary function(s) in a simulation workflow.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    alias: tool_role
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: ToolRole
    multivalued: true
  programming_language:
    name: programming_language
    description: Implementation languages.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:programmingLanguage
    alias: programming_language
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: ProgrammingLanguageEnum
    multivalued: true
  runtime_platform:
    name: runtime_platform
    description: Execution backends or platforms (e.g., MPI, OpenMP, CUDA, JAX).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:runtimePlatform
    alias: runtime_platform
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  operating_system:
    name: operating_system
    description: Supported operating systems (e.g., Linux, macOS, Windows).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:operatingSystem
    alias: operating_system
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  interoperates_with:
    name: interoperates_with
    description: Tools this tool can exchange data with or delegate to.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    alias: interoperates_with
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: SimulationTool
    multivalued: true
  version:
    name: version
    description: Current or latest stable version string.
    from_schema: https://w3id.org/tvbo/software
    slot_uri: schema:softwareVersion
    alias: version
    owner: SimulationTool
    domain_of:
    - ClinicalScale
    - SimulationTool
    - SoftwareRequirement
    - SoftwareEnvironment
    range: string
  date_created:
    name: date_created
    description: Date the software was first released (YYYY-MM-DD).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:dateCreated
    alias: date_created
    owner: SimulationTool
    domain_of:
    - SimulationTool
    - Provenance
    range: date
  date_modified:
    name: date_modified
    description: Date of the most recent release or significant update.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:dateModified
    alias: date_modified
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: date
  development_status:
    name: development_status
    description: Development status (repostatus.org aligned).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    alias: development_status
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: DevelopmentStatus
  author:
    name: author
    description: Original author(s) or creating organization(s).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:author
    alias: author
    owner: SimulationTool
    domain_of:
    - BrainAtlas
    - SimulationTool
    range: string
    multivalued: true
  maintainer:
    name: maintainer
    description: Current maintainer(s) or responsible organization(s).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:maintainer
    alias: maintainer
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  funder:
    name: funder
    description: Funding bodies or grants (e.g., 'EU H2020 945539', 'NIH R01...').
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:funder
    alias: funder
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  reference_publication:
    name: reference_publication
    description: DOI of the primary reference publication for this tool.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    alias: reference_publication
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: string
  citation:
    name: citation
    description: Additional citation strings or DOIs.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:citation
    alias: citation
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  keywords:
    name: keywords
    description: Tags for topic-based discovery and clustering.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:keywords
    alias: keywords
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: string
    multivalued: true
  same_as:
    name: same_as
    description: URIs that unambiguously identify this tool (Wikidata, bio.tools,
      RRID, SciCrunch).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:sameAs
    alias: same_as
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: uri
    multivalued: true
  issue_tracker:
    name: issue_tracker
    description: URL of the bug tracker or issue board.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    alias: issue_tracker
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: uri
  is_accessible_for_free:
    name: is_accessible_for_free
    description: Whether the tool is free/open-source.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:isAccessibleForFree
    ifabsent: 'True'
    alias: is_accessible_for_free
    owner: SimulationTool
    domain_of:
    - SimulationTool
    range: boolean
  name:
    name: name
    from_schema: https://w3id.org/tvbo/software
    slot_uri: schema:name
    key: true
    alias: name
    owner: SimulationTool
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Event
    - Tractogram
    - GraphGenerator
    - File
    - StateValue
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - Algorithm
    - Option
    - BranchSwitch
    - Continuation
    - Coupling
    range: string
    required: true
  description:
    name: description
    from_schema: https://w3id.org/tvbo/software
    slot_uri: schema:description
    alias: description
    owner: SimulationTool
    domain_of:
    - Dataset
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - Network
    - GraphGenerator
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  homepage:
    name: homepage
    description: Project homepage URL.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:url
    alias: homepage
    owner: SimulationTool
    domain_of:
    - SoftwarePackage
    range: uri
  license:
    name: license
    description: SPDX license identifier (e.g., MIT, GPL-3.0-only).
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:license
    alias: license
    owner: SimulationTool
    domain_of:
    - CommonCoordinateSpace
    - SoftwarePackage
    - SoftwareRequirement
    - Provenance
    range: string
  repository:
    name: repository
    description: Source code repository URL.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    slot_uri: schema:codeRepository
    alias: repository
    owner: SimulationTool
    domain_of:
    - SoftwarePackage
    range: uri
  doi:
    name: doi
    description: Digital Object Identifier for the software or its reference publication.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    alias: doi
    owner: SimulationTool
    domain_of:
    - SoftwarePackage
    - SimulationStudy
    range: string
  ecosystem:
    name: ecosystem
    description: Package ecosystem(s) through which the software is distributed.
    from_schema: https://w3id.org/tvbo/software
    rank: 1000
    alias: ecosystem
    owner: SimulationTool
    domain_of:
    - SoftwarePackage
    range: EcosystemEnum
    multivalued: true
class_uri: schema:SoftwareApplication