| ParcellationTerminology |
A schema for representing a parcellation terminology, which consists of parce… |
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| Equation |
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| Stimulus |
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| Event |
A discrete or continuous event that modifies the system during simulation |
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| Parcellation |
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| Tractogram |
Reference to tractography/diffusion MRI data used to derive structural connec… |
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| Matrix |
Adjacency matrix of a network |
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| Phenotype |
Per-subject phenotype table (BIDS phenotype/ directory convention) |
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| Network |
Network specification with nodes, edges, and reusable coupling configurations |
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| Node |
A node in a network with its own dynamics and properties |
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| Edge |
An edge in a network |
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| Observation |
Unified class for all observation/measurement specifications |
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| Dynamics |
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| StateVariable |
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| Parameter |
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| Function |
A function with explicit input -> transformation -> output flow |
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| FunctionCall |
Invocation of a function in a pipeline |
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| DerivedVariable |
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| RandomStream |
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| DataSource |
Specification for loading external/empirical data |
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| OptimizationStage |
A single stage in a multi-stage optimization workflow |
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| Exploration |
Parameter space exploration (grid search, sweep) |
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| ExplorationAxis |
One axis of a parameter exploration grid |
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| FreeParameter |
One degree of freedom in an OptimizationStage |
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| Inference |
Bayesian inference of model parameters from an observation, via MCMC |
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| AlgorithmStage |
One stage of a multi-stage tuning schedule |
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| TuningObjective |
Defines what the tuning algorithm optimizes for |
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| Continuation |
Complete specification of a numerical continuation / bifurcation analysis |
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| Coupling |
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| RegionMapping |
Maps vertices to parent regions for hierarchical/aggregated coupling |
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| SimulationStudy |
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| TimeSeries |
Time series data from simulations or measurements |
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| NDArray |
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| SpatialDomain |
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| Mesh |
Triangle (or higher-order) mesh geometry |
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| SpatialField |
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| FieldStateVariable |
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| DifferentialOperator |
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| BoundaryCondition |
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| PDESolver |
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| PDE |
Partial differential equation problem definition |
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| Subject |
A participant in a study |
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| Session |
A data collection session for a subject |
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| Dataset |
A collection of subjects for a multi-subject study |
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| DBSDataset |
Collection of data related to a specific DBS study |
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| DBSSubject |
Human or animal subject receiving DBS |
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| Contact |
Individual contact on a DBS electrode |
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| SoftwareEnvironment |
A reproducible software environment aggregating one or more SoftwareRequireme… |
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| TemporalApplicableEquation |
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| LossFunction |
A loss function for optimization with optional aggregation |
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| DerivedParameter |
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| Optimization |
Configuration for parameter optimization |
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| SimulationExperiment |
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