Slot: setup

Shell lines run verbatim before the task command, after set -euo pipefail and any module/venv activation. The general hook for environment setup the typed fields do not cover, e.g. activating a conda env (conda activate <name>), sourcing a profile, or exporting a computed path. Ordered; each line is emitted as-is.

URI: tvbo:slot/setup

Applicable Classes

Name Description Modifies Slot
WorkflowEngineConfig Execution directives for a workflow engine no

Properties

Type and Range

Property Value
Range xsd:string
Domain Of WorkflowEngineConfig

Cardinality and Requirements

Property Value
Multivalued Yes

Slot Characteristics

Property Value
Owner WorkflowEngineConfig

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/tvbo

Mappings

Mapping Type Mapped Value
self tvbo:setup
native tvbo:setup

LinkML Source

name: setup
description: Shell lines run verbatim before the task command, after ``set -euo pipefail``
  and any module/venv activation. The general hook for environment setup the typed
  fields do not cover, e.g. activating a conda env (``conda activate <name>``), sourcing
  a profile, or exporting a computed path. Ordered; each line is emitted as-is.
from_schema: https://w3id.org/tvbo
rank: 1000
owner: WorkflowEngineConfig
domain_of:
- WorkflowEngineConfig
range: string
multivalued: true