Class: TimeSeries

Time series data from simulations or measurements. Supports BIDS-compatible export for computational modeling (BEP034).

URI: tvbo:TimeSeries

 classDiagram
    class TimeSeries
    click TimeSeries href "./TimeSeries.html"
      TimeSeries : connectivity_ref
        
          
    
        
        
        TimeSeries --> "0..1" String : connectivity_ref
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : data
        
          
    
        
        
        TimeSeries --> "0..1" Matrix : data
        click Matrix href "./Matrix.html"
    

        
      TimeSeries : dataLocation
        
          
    
        
        
        TimeSeries --> "0..1" String : dataLocation
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : description
        
          
    
        
        
        TimeSeries --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : generated_at
        
          
    
        
        
        TimeSeries --> "0..1" Datetime : generated_at
        click Datetime href "../http://www.w3.org/2001/XMLSchema#dateTime.html"
    

        
      TimeSeries : label
        
          
    
        
        
        TimeSeries --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : labels_dimensions
        
          
    
        
        
        TimeSeries --> "0..1" String : labels_dimensions
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : labels_ordering
        
          
    
        
        
        TimeSeries --> "*" String : labels_ordering
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : modality
        
          
    
        
        
        TimeSeries --> "0..1" ImagingModality : modality
        click ImagingModality href "../../enums/ImagingModality.html"
    

        
      TimeSeries : model_equation_ref
        
          
    
        
        
        TimeSeries --> "0..1" String : model_equation_ref
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : model_param_ref
        
          
    
        
        
        TimeSeries --> "0..1" String : model_param_ref
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : run_id
        
          
    
        
        
        TimeSeries --> "0..1" Integer : run_id
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      TimeSeries : sampling_period
        
          
    
        
        
        TimeSeries --> "0..1" Float : sampling_period
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      TimeSeries : sampling_period_unit
        
          
    
        
        
        TimeSeries --> "0..1" String : sampling_period_unit
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : sampling_rate
        
          
    
        
        
        TimeSeries --> "0..1" Float : sampling_rate
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      TimeSeries : session_id
        
          
    
        
        
        TimeSeries --> "0..1" String : session_id
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : software_environment
        
          
    
        
        
        TimeSeries --> "0..1" SoftwareEnvironment : software_environment
        click SoftwareEnvironment href "./SoftwareEnvironment.html"
    

        
      TimeSeries : source_experiment
        
          
    
        
        
        TimeSeries --> "0..1" SimulationExperiment : source_experiment
        click SimulationExperiment href "./SimulationExperiment.html"
    

        
      TimeSeries : subject_id
        
          
    
        
        
        TimeSeries --> "0..1" String : subject_id
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : task_name
        
          
    
        
        
        TimeSeries --> "0..1" String : task_name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      TimeSeries : time
        
          
    
        
        
        TimeSeries --> "0..1" Matrix : time
        click Matrix href "./Matrix.html"
    

        
      TimeSeries : unit
        
          
    
        
        
        TimeSeries --> "0..1" String : unit
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"

Slots

Name	Cardinality and Range	Description	Inheritance
label	0..1 xsd:string		direct
description	0..1 xsd:string		direct
dataLocation	0..1 xsd:string	Add the location of the data file containing the parcellation terminology	direct
data	0..1 Matrix		direct
time	0..1 Matrix		direct
sampling_rate	0..1 xsd:float	Sampling rate in Hz	direct
sampling_period	0..1 xsd:float	Time between samples (inverse of sampling_rate)	direct
sampling_period_unit	0..1 xsd:string	Unit of the sampling period (e	direct
unit	0..1 xsd:string	Physical unit of the time series values	direct
labels_ordering	* xsd:string	Ordering of dimensions: Time, State Variable, Space, Mode	direct
labels_dimensions	0..1 xsd:string	Mapping of dimension names to their labels (JSON-encoded dict)	direct
source_experiment	0..1 SimulationExperiment	Reference to the SimulationExperiment that generated this TimeSeries	direct
generated_at	0..1 xsd:dateTime	Timestamp when this TimeSeries was generated	direct
software_environment	0..1 SoftwareEnvironment	Software environment used to generate this data	direct
task_name	0..1 xsd:string	BIDS task name for the simulation (e	direct
subject_id	0..1 xsd:string	BIDS subject identifier	direct
session_id	0..1 xsd:string	BIDS session identifier	direct
run_id	0..1 xsd:integer	BIDS run number	direct
modality	0..1 ImagingModality	Imaging modality or simulation output type	direct
model_equation_ref	0..1 xsd:string	BIDS ModelEq reference: path to _eq	direct
model_param_ref	0..1 xsd:string	BIDS ModelParam reference: path to _param	direct
connectivity_ref	0..1 xsd:string	Reference to connectivity data (_conndata-network_connectivity	direct

Usages

used by	used in	type	used
StateVariable	history	range	TimeSeries
FieldStateVariable	history	range	TimeSeries

Comments

Supports BIDS BEP034 computational modeling extension.
Use to_bids() method in Python class to export as BIDS dataset.

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/tvbo

Mappings

Mapping Type	Mapped Value
self	tvbo:TimeSeries
native	tvbo:TimeSeries

LinkML Source

Direct

name: TimeSeries
description: Time series data from simulations or measurements. Supports BIDS-compatible
  export for computational modeling (BEP034).
comments:
- Supports BIDS BEP034 computational modeling extension.
- Use to_bids() method in Python class to export as BIDS dataset.
from_schema: https://w3id.org/tvbo
slots:
- label
- description
- dataLocation
attributes:
  data:
    name: data
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: Matrix
  time:
    name: time
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: Matrix
  sampling_rate:
    name: sampling_rate
    description: Sampling rate in Hz.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: float
  sampling_period:
    name: sampling_period
    description: Time between samples (inverse of sampling_rate).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: float
  sampling_period_unit:
    name: sampling_period_unit
    description: Unit of the sampling period (e.g., 'ms', 's').
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: ms
    domain_of:
    - TimeSeries
    range: string
  unit:
    name: unit
    description: Physical unit of the time series values.
    from_schema: https://w3id.org/tvbo
    domain_of:
    - CommonCoordinateSpace
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: string
  labels_ordering:
    name: labels_ordering
    description: 'Ordering of dimensions: Time, State Variable, Space, Mode.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: string
    multivalued: true
  labels_dimensions:
    name: labels_dimensions
    description: Mapping of dimension names to their labels (JSON-encoded dict).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: string
  source_experiment:
    name: source_experiment
    description: Reference to the SimulationExperiment that generated this TimeSeries.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: SimulationExperiment
  generated_at:
    name: generated_at
    description: Timestamp when this TimeSeries was generated.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: datetime
  software_environment:
    name: software_environment
    description: Software environment used to generate this data.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: SoftwareEnvironment
  task_name:
    name: task_name
    description: BIDS task name for the simulation (e.g., 'rest', 'simulation').
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: string
  subject_id:
    name: subject_id
    description: BIDS subject identifier.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Subject
    - TimeSeries
    range: string
  session_id:
    name: session_id
    description: BIDS session identifier.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: string
  run_id:
    name: run_id
    description: BIDS run number.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: integer
  modality:
    name: modality
    description: Imaging modality or simulation output type.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: ImagingModality
  model_equation_ref:
    name: model_equation_ref
    description: 'BIDS ModelEq reference: path to _eq.xml LEMS file.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: string
  model_param_ref:
    name: model_param_ref
    description: 'BIDS ModelParam reference: path to _param.xml LEMS file.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: string
  connectivity_ref:
    name: connectivity_ref
    description: Reference to connectivity data (_conndata-network_connectivity.tsv).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - TimeSeries
    range: string
class_uri: tvbo:TimeSeries

Induced

name: TimeSeries
description: Time series data from simulations or measurements. Supports BIDS-compatible
  export for computational modeling (BEP034).
comments:
- Supports BIDS BEP034 computational modeling extension.
- Use to_bids() method in Python class to export as BIDS dataset.
from_schema: https://w3id.org/tvbo
attributes:
  data:
    name: data
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: data
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: Matrix
  time:
    name: time
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: time
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: Matrix
  sampling_rate:
    name: sampling_rate
    description: Sampling rate in Hz.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: sampling_rate
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: float
  sampling_period:
    name: sampling_period
    description: Time between samples (inverse of sampling_rate).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: sampling_period
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: float
  sampling_period_unit:
    name: sampling_period_unit
    description: Unit of the sampling period (e.g., 'ms', 's').
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: ms
    alias: sampling_period_unit
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: string
  unit:
    name: unit
    description: Physical unit of the time series values.
    from_schema: https://w3id.org/tvbo
    alias: unit
    owner: TimeSeries
    domain_of:
    - CommonCoordinateSpace
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: string
  labels_ordering:
    name: labels_ordering
    description: 'Ordering of dimensions: Time, State Variable, Space, Mode.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: labels_ordering
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: string
    multivalued: true
  labels_dimensions:
    name: labels_dimensions
    description: Mapping of dimension names to their labels (JSON-encoded dict).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: labels_dimensions
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: string
  source_experiment:
    name: source_experiment
    description: Reference to the SimulationExperiment that generated this TimeSeries.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: source_experiment
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: SimulationExperiment
  generated_at:
    name: generated_at
    description: Timestamp when this TimeSeries was generated.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: generated_at
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: datetime
  software_environment:
    name: software_environment
    description: Software environment used to generate this data.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: software_environment
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: SoftwareEnvironment
  task_name:
    name: task_name
    description: BIDS task name for the simulation (e.g., 'rest', 'simulation').
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: task_name
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: string
  subject_id:
    name: subject_id
    description: BIDS subject identifier.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: subject_id
    owner: TimeSeries
    domain_of:
    - Subject
    - TimeSeries
    range: string
  session_id:
    name: session_id
    description: BIDS session identifier.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: session_id
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: string
  run_id:
    name: run_id
    description: BIDS run number.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: run_id
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: integer
  modality:
    name: modality
    description: Imaging modality or simulation output type.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: modality
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: ImagingModality
  model_equation_ref:
    name: model_equation_ref
    description: 'BIDS ModelEq reference: path to _eq.xml LEMS file.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: model_equation_ref
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: string
  model_param_ref:
    name: model_param_ref
    description: 'BIDS ModelParam reference: path to _param.xml LEMS file.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: model_param_ref
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: string
  connectivity_ref:
    name: connectivity_ref
    description: Reference to connectivity data (_conndata-network_connectivity.tsv).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: connectivity_ref
    owner: TimeSeries
    domain_of:
    - TimeSeries
    range: string
  label:
    name: label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: label
    owner: TimeSeries
    domain_of:
    - ParcellationTerminology
    - Dataset
    - Contact
    - Equation
    - Stimulus
    - Parcellation
    - Tractogram
    - Matrix
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - TuningObjective
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: description
    owner: TimeSeries
    domain_of:
    - ClinicalScore
    - Equation
    - Stimulus
    - Tractogram
    - Matrix
    - Network
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  dataLocation:
    name: dataLocation
    description: Add the location of the data file containing the parcellation terminology.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    alias: dataLocation
    owner: TimeSeries
    domain_of:
    - ParcellationTerminology
    - Stimulus
    - Matrix
    - RandomStream
    - RegionMapping
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - NDArray
    - Mesh
    range: string
class_uri: tvbo:TimeSeries