| Equation |
|
no |
| Stimulus |
|
no |
| Event |
A discrete or continuous event that modifies the system during simulation |
no |
| Tractogram |
Reference to tractography/diffusion MRI data used to derive structural connec… |
no |
| Matrix |
Adjacency matrix of a network |
no |
| Phenotype |
Per-subject phenotype table (BIDS phenotype/ directory convention) |
no |
| Network |
Network specification with nodes, edges, and reusable coupling configurations |
no |
| GraphGenerator |
Backend-agnostic graph generator specification |
no |
| ProcedureStep |
A single named step (or output) in a Procedure, carrying the Equation that de… |
no |
| File |
|
no |
| Node |
A node in a network with its own dynamics and properties |
no |
| Edge |
An edge in a network |
no |
| Observation |
Unified class for all observation/measurement specifications |
no |
| Dynamics |
|
no |
| StateVariable |
|
no |
| Parameter |
|
no |
| CouplingInput |
Specification of a coupling input channel for multi-coupling dynamics |
no |
| Argument |
A function argument with explicit value specification |
no |
| Function |
A function with explicit input -> transformation -> output flow |
no |
| FunctionCall |
Invocation of a function in a pipeline |
no |
| Callable |
|
no |
| DerivedParameter |
|
no |
| DerivedVariable |
|
no |
| RandomStream |
|
no |
| DataSource |
Specification for loading external/empirical data |
no |
| OptimizationStage |
A single stage in a multi-stage optimization workflow |
no |
| Exploration |
Parameter space exploration (grid search, sweep) |
no |
| ExplorationAxis |
One axis of a parameter exploration grid |
no |
| FreeParameter |
One degree of freedom in an OptimizationStage |
no |
| Inference |
Bayesian inference of model parameters from an observation, via MCMC |
no |
| Prior |
Prior belief over one inferred parameter |
no |
| Likelihood |
Observation model for Bayesian inference: p(data |
sim(theta)) |
| UpdateRule |
Defines how a parameter is updated based on observables |
no |
| AlgorithmStage |
One stage of a multi-stage tuning schedule |
no |
| TuningObjective |
Defines what the tuning algorithm optimizes for |
no |
| Algorithm |
A complete specification of an iterative parameter tuning algorithm |
no |
| BranchSwitch |
Specification for switching from a detected bifurcation point to a new branch… |
no |
| Continuation |
Complete specification of a numerical continuation / bifurcation analysis |
no |
| Integrator |
Fixed-step or adaptive ODE integrator with TVB-specific extensions (noise, tr… |
no |
| Coupling |
|
no |
| RegionMapping |
Maps vertices to parent regions for hierarchical/aggregated coupling |
no |
| Study |
Bibliographic anchor for a source publication, identified by its citation key… |
no |
| TimeSeries |
Time series data from simulations or measurements |
no |
| NDArray |
|
no |
| SpatialDomain |
|
no |
| Mesh |
Triangle (or higher-order) mesh geometry |
no |
| SpatialField |
|
no |
| FieldStateVariable |
|
no |
| BoundaryCondition |
|
no |
| PDESolver |
|
no |
| PDE |
Partial differential equation problem definition |
no |
| Dataset |
A collection of subjects for a multi-subject study |
no |
| DBSDataset |
Collection of data related to a specific DBS study |
no |
| ClinicalScore |
Metadata about a clinical score or scale |
no |
| SoftwarePackage |
Identity and metadata for a software package, aligned with schema |
no |
| SimulationTool |
A software tool for computational neuroscience simulation, analysis, or model… |
no |
| SoftwareRequirement |
An individual software requirement binding a package to a version constraint … |
no |
| SoftwareEnvironment |
A reproducible software environment aggregating one or more SoftwareRequireme… |
no |
| TemporalApplicableEquation |
|
no |
| MeasureSpec |
Metadata for one phenotype measure |
no |
| NamedArray |
A named numeric array |
no |
| LossFunction |
A loss function for optimization with optional aggregation |
no |
| ClassReference |
Reference to a class that can be instantiated and called |
no |
| Optimization |
Configuration for parameter optimization |
no |
| SimulationExperiment |
|
no |
| SimulationStudy |
|
no |