Class: Integrator

URI: tvbo:class/Integrator

 classDiagram
    class Integrator
    click Integrator href "./Integrator.html"
      Integrator : delayed
        
          
    
        
        
        Integrator --> "0..1" Boolean : delayed
        click Boolean href "../http://www.w3.org/2001/XMLSchema#boolean.html"
    

        
      Integrator : description
        
          
    
        
        
        Integrator --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Integrator : duration
        
          
    
        
        
        Integrator --> "0..1" Float : duration
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      Integrator : intermediate_expressions
        
          
    
        
        
        Integrator --> "*" DerivedVariable : intermediate_expressions
        click DerivedVariable href "./DerivedVariable.html"
    

        
      Integrator : method
        
          
    
        
        
        Integrator --> "0..1" String : method
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Integrator : noise
        
          
    
        
        
        Integrator --> "0..1" Noise : noise
        click Noise href "./Noise.html"
    

        
      Integrator : number_of_stages
        
          
    
        
        
        Integrator --> "0..1" Integer : number_of_stages
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      Integrator : parameters
        
          
    
        
        
        Integrator --> "*" Parameter : parameters
        click Parameter href "./Parameter.html"
    

        
      Integrator : scipy_ode_base
        
          
    
        
        
        Integrator --> "0..1" Boolean : scipy_ode_base
        click Boolean href "../http://www.w3.org/2001/XMLSchema#boolean.html"
    

        
      Integrator : state_wise_sigma
        
          
    
        
        
        Integrator --> "*" Float : state_wise_sigma
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      Integrator : step_size
        
          
    
        
        
        Integrator --> "0..1" Float : step_size
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      Integrator : steps
        
          
    
        
        
        Integrator --> "0..1" Integer : steps
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      Integrator : time_scale
        
          
    
        
        
        Integrator --> "0..1" String : time_scale
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Integrator : transient_time
        
          
    
        
        
        Integrator --> "0..1" Float : transient_time
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      Integrator : unit
        
          
    
        
        
        Integrator --> "0..1" String : unit
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Integrator : update_expression
        
          
    
        
        
        Integrator --> "0..1" DerivedVariable : update_expression
        click DerivedVariable href "./DerivedVariable.html"

Slots

Name Cardinality and Range Description Inheritance
time_scale 0..1
xsd:string		 direct
unit 0..1
xsd:string		 direct
parameters *
Parameter		 direct
duration 0..1
xsd:float		 direct
description 0..1
xsd:string		 direct
method 0..1
xsd:string		 Integration method (euler, heun, rk4, etc direct
step_size 0..1
xsd:float		 direct
steps 0..1
xsd:integer		 direct
noise 0..1
Noise		 direct
state_wise_sigma *
xsd:float		 direct
transient_time 0..1
xsd:float		 direct
scipy_ode_base 0..1
xsd:boolean		 direct
number_of_stages 0..1
xsd:integer		 direct
intermediate_expressions *
DerivedVariable		 direct
update_expression 0..1
DerivedVariable		 direct
delayed 0..1
xsd:boolean		 direct

Usages

used by used in type used
Optimization integration range Integrator
SimulationExperiment integration range Integrator

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/tvbo

Mappings

Mapping Type Mapped Value
self tvbo:Integrator
native tvbo:Integrator

LinkML Source

Direct

name: Integrator
from_schema: https://w3id.org/tvbo
slots:
- time_scale
- unit
- parameters
- duration
- description
attributes:
  method:
    name: method
    description: Integration method (euler, heun, rk4, etc.)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: string(euler)
    domain_of:
    - Integrator
    range: string
  step_size:
    name: step_size
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: float(0.01220703125)
    domain_of:
    - Integrator
    range: float
  steps:
    name: steps
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Integrator
    range: integer
  noise:
    name: noise
    from_schema: https://w3id.org/tvbo
    domain_of:
    - StateVariable
    - Integrator
    range: Noise
    inlined: true
  state_wise_sigma:
    name: state_wise_sigma
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Integrator
    range: float
    multivalued: true
  transient_time:
    name: transient_time
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: float(0)
    domain_of:
    - Integrator
    range: float
  scipy_ode_base:
    name: scipy_ode_base
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: 'False'
    domain_of:
    - Integrator
    range: boolean
  number_of_stages:
    name: number_of_stages
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: integer(1)
    domain_of:
    - Integrator
    range: integer
  intermediate_expressions:
    name: intermediate_expressions
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Integrator
    range: DerivedVariable
    multivalued: true
    inlined: true
  update_expression:
    name: update_expression
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Integrator
    range: DerivedVariable
    inlined: true
  delayed:
    name: delayed
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: 'True'
    domain_of:
    - Integrator
    - Coupling
    range: boolean

Induced

name: Integrator
from_schema: https://w3id.org/tvbo
attributes:
  method:
    name: method
    description: Integration method (euler, heun, rk4, etc.)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: string(euler)
    alias: method
    owner: Integrator
    domain_of:
    - Integrator
    range: string
  step_size:
    name: step_size
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: float(0.01220703125)
    alias: step_size
    owner: Integrator
    domain_of:
    - Integrator
    range: float
  steps:
    name: steps
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: steps
    owner: Integrator
    domain_of:
    - Integrator
    range: integer
  noise:
    name: noise
    from_schema: https://w3id.org/tvbo
    alias: noise
    owner: Integrator
    domain_of:
    - StateVariable
    - Integrator
    range: Noise
    inlined: true
  state_wise_sigma:
    name: state_wise_sigma
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: state_wise_sigma
    owner: Integrator
    domain_of:
    - Integrator
    range: float
    multivalued: true
  transient_time:
    name: transient_time
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: float(0)
    alias: transient_time
    owner: Integrator
    domain_of:
    - Integrator
    range: float
  scipy_ode_base:
    name: scipy_ode_base
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: 'False'
    alias: scipy_ode_base
    owner: Integrator
    domain_of:
    - Integrator
    range: boolean
  number_of_stages:
    name: number_of_stages
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: integer(1)
    alias: number_of_stages
    owner: Integrator
    domain_of:
    - Integrator
    range: integer
  intermediate_expressions:
    name: intermediate_expressions
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: intermediate_expressions
    owner: Integrator
    domain_of:
    - Integrator
    range: DerivedVariable
    multivalued: true
    inlined: true
  update_expression:
    name: update_expression
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: update_expression
    owner: Integrator
    domain_of:
    - Integrator
    range: DerivedVariable
    inlined: true
  delayed:
    name: delayed
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: 'True'
    alias: delayed
    owner: Integrator
    domain_of:
    - Integrator
    - Coupling
    range: boolean
  time_scale:
    name: time_scale
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: ms
    alias: time_scale
    owner: Integrator
    domain_of:
    - Observation
    - Integrator
    range: string
  unit:
    name: unit
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: unit
    owner: Integrator
    domain_of:
    - CommonCoordinateSpace
    - StateVariable
    - Parameter
    - Argument
    - DerivedParameter
    - DerivedVariable
    - Integrator
    - TimeSeries
    - NDArray
    - SpatialField
    range: string
  parameters:
    name: parameters
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: parameters
    owner: Integrator
    domain_of:
    - Equation
    - Stimulus
    - TemporalApplicableEquation
    - Node
    - Edge
    - Observation
    - Dynamics
    - Distribution
    - Noise
    - Exploration
    - Integrator
    - Coupling
    - PDE
    range: Parameter
    multivalued: true
    inlined: true
  duration:
    name: duration
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: float(1000)
    alias: duration
    owner: Integrator
    domain_of:
    - Stimulus
    - Integrator
    range: float
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: description
    owner: Integrator
    domain_of:
    - ClinicalScore
    - Equation
    - Stimulus
    - Tractogram
    - Matrix
    - Network
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string