Class: InitialState

How to obtain the starting equilibrium or periodic orbit for continuation. Most robust: time-integrate to steady state.

URI: tvbo:class/InitialState

 classDiagram
    class InitialState
    click InitialState href "./InitialState.html"
      InitialState : abs_tol
        
          
    
        
        
        InitialState --> "0..1" Float : abs_tol
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      InitialState : duration
        
          
    
        
        
        InitialState --> "0..1" Float : duration
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      InitialState : method
        
          
    
        
        
        InitialState --> "0..1" InitialStateMethod : method
        click InitialStateMethod href "../../enums/InitialStateMethod.html"
    

        
      InitialState : rel_tol
        
          
    
        
        
        InitialState --> "0..1" Float : rel_tol
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      InitialState : solver
        
          
    
        
        
        InitialState --> "0..1" Solver : solver
        click Solver href "./Solver.html"
    

        
      InitialState : source_branch
        
          
    
        
        
        InitialState --> "0..1" String : source_branch
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      InitialState : source_point
        
          
    
        
        
        InitialState --> "0..1" String : source_point
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      

Slots

Name	Cardinality and Range	Description	Inheritance
method	0..1 InitialStateMethod	Strategy for finding the initial state	direct
duration	0..1 xsd:float	Integration duration for time_integration method	direct
abs_tol	0..1 xsd:float	Absolute tolerance for ODE integration	direct
rel_tol	0..1 xsd:float	Relative tolerance for ODE integration	direct
solver	0..1 Solver	ODE solver for time_integration method	direct
source_branch	0..1 xsd:string	Name of a previously computed branch (for from_branch method)	direct
source_point	0..1 xsd:string	Which point on the source branch: ‘endpoint’, ‘hopf:1’, ‘fold:2’, a step numb…	direct

Usages

used by	used in	type	used
Continuation	initial_state	range	InitialState

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/tvbo

Mappings

Mapping Type	Mapped Value
self	tvbo:InitialState
native	tvbo:InitialState

LinkML Source

Direct

name: InitialState
description: 'How to obtain the starting equilibrium or periodic orbit for continuation.
  Most robust: time-integrate to steady state.'
from_schema: https://w3id.org/tvbo
attributes:
  method:
    name: method
    description: Strategy for finding the initial state.
    from_schema: https://w3id.org/tvbo
    ifabsent: string(time_integration)
    domain_of:
    - Discretization
    - InitialState
    - Solver
    - Integrator
    range: InitialStateMethod
  duration:
    name: duration
    description: Integration duration for time_integration method.
    from_schema: https://w3id.org/tvbo
    ifabsent: float(2000.0)
    domain_of:
    - Stimulus
    - Event
    - InitialState
    - Integrator
    range: float
  abs_tol:
    name: abs_tol
    description: Absolute tolerance for ODE integration.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: float(1e-10)
    domain_of:
    - InitialState
    - Solver
    range: float
  rel_tol:
    name: rel_tol
    description: Relative tolerance for ODE integration.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: float(1e-10)
    domain_of:
    - InitialState
    - Solver
    range: float
  solver:
    name: solver
    description: ODE solver for time_integration method. Specify method (e.g., Tsit5,
      Heun, RK4) and tolerances.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - InitialState
    - PDE
    range: Solver
    inlined: true
  source_branch:
    name: source_branch
    description: Name of a previously computed branch (for from_branch method).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - InitialState
    range: string
  source_point:
    name: source_point
    description: 'Which point on the source branch: ''endpoint'', ''hopf:1'', ''fold:2'',
      a step number, etc.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - InitialState
    - BranchSwitch
    range: string

Induced

name: InitialState
description: 'How to obtain the starting equilibrium or periodic orbit for continuation.
  Most robust: time-integrate to steady state.'
from_schema: https://w3id.org/tvbo
attributes:
  method:
    name: method
    description: Strategy for finding the initial state.
    from_schema: https://w3id.org/tvbo
    ifabsent: string(time_integration)
    alias: method
    owner: InitialState
    domain_of:
    - Discretization
    - InitialState
    - Solver
    - Integrator
    range: InitialStateMethod
  duration:
    name: duration
    description: Integration duration for time_integration method.
    from_schema: https://w3id.org/tvbo
    ifabsent: float(2000.0)
    alias: duration
    owner: InitialState
    domain_of:
    - Stimulus
    - Event
    - InitialState
    - Integrator
    range: float
  abs_tol:
    name: abs_tol
    description: Absolute tolerance for ODE integration.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: float(1e-10)
    alias: abs_tol
    owner: InitialState
    domain_of:
    - InitialState
    - Solver
    range: float
  rel_tol:
    name: rel_tol
    description: Relative tolerance for ODE integration.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: float(1e-10)
    alias: rel_tol
    owner: InitialState
    domain_of:
    - InitialState
    - Solver
    range: float
  solver:
    name: solver
    description: ODE solver for time_integration method. Specify method (e.g., Tsit5,
      Heun, RK4) and tolerances.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: solver
    owner: InitialState
    domain_of:
    - InitialState
    - PDE
    range: Solver
    inlined: true
  source_branch:
    name: source_branch
    description: Name of a previously computed branch (for from_branch method).
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: source_branch
    owner: InitialState
    domain_of:
    - InitialState
    range: string
  source_point:
    name: source_point
    description: 'Which point on the source branch: ''endpoint'', ''hopf:1'', ''fold:2'',
      a step number, etc.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: source_point
    owner: InitialState
    domain_of:
    - InitialState
    - BranchSwitch
    range: string