Class: Dynamics

URI: tvbo:Dynamics

 classDiagram
    class Dynamics
    click Dynamics href "./Dynamics.html"
      Dynamics : coupling_inputs
        
          
    
        
        
        Dynamics --> "*" CouplingInput : coupling_inputs
        click CouplingInput href "./CouplingInput.html"
    

        
      Dynamics : coupling_terms
        
          
    
        
        
        Dynamics --> "*" Parameter : coupling_terms
        click Parameter href "./Parameter.html"
    

        
      Dynamics : derived_from_model
        
          
    
        
        
        Dynamics --> "0..1" Dynamics : derived_from_model
        click Dynamics href "./Dynamics.html"
    

        
      Dynamics : derived_parameters
        
          
    
        
        
        Dynamics --> "*" DerivedParameter : derived_parameters
        click DerivedParameter href "./DerivedParameter.html"
    

        
      Dynamics : derived_variables
        
          
    
        
        
        Dynamics --> "*" DerivedVariable : derived_variables
        click DerivedVariable href "./DerivedVariable.html"
    

        
      Dynamics : description
        
          
    
        
        
        Dynamics --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dynamics : functions
        
          
    
        
        
        Dynamics --> "*" Function : functions
        click Function href "./Function.html"
    

        
      Dynamics : has_reference
        
          
    
        
        
        Dynamics --> "0..1" String : has_reference
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dynamics : iri
        
          
    
        
        
        Dynamics --> "0..1" String : iri
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dynamics : label
        
          
    
        
        
        Dynamics --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dynamics : local_coupling_term
        
          
    
        
        
        Dynamics --> "0..1" Parameter : local_coupling_term
        click Parameter href "./Parameter.html"
    

        
      Dynamics : modes
        
          
    
        
        
        Dynamics --> "*" Dynamics : modes
        click Dynamics href "./Dynamics.html"
    

        
      Dynamics : modified
        
          
    
        
        
        Dynamics --> "0..1" Boolean : modified
        click Boolean href "../http://www.w3.org/2001/XMLSchema#boolean.html"
    

        
      Dynamics : name
        
          
    
        
        
        Dynamics --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dynamics : number_of_modes
        
          
    
        
        
        Dynamics --> "0..1" Integer : number_of_modes
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      Dynamics : output
        
          
    
        
        
        Dynamics --> "*" String : output
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dynamics : parameters
        
          
    
        
        
        Dynamics --> "*" Parameter : parameters
        click Parameter href "./Parameter.html"
    

        
      Dynamics : references
        
          
    
        
        
        Dynamics --> "*" String : references
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dynamics : source
        
          
    
        
        
        Dynamics --> "0..1" String : source
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Dynamics : state_variables
        
          
    
        
        
        Dynamics --> "*" StateVariable : state_variables
        click StateVariable href "./StateVariable.html"
    

        
      Dynamics : stimulus
        
          
    
        
        
        Dynamics --> "0..1" Stimulus : stimulus
        click Stimulus href "./Stimulus.html"
    

        
      Dynamics : system_type
        
          
    
        
        
        Dynamics --> "0..1" SystemType : system_type
        click SystemType href "../../enums/SystemType.html"

Slots

Name Cardinality and Range Description Inheritance
has_reference 0..1
xsd:string		 direct
name 1
xsd:string		 direct
label 0..1
xsd:string		 direct
iri 0..1
xsd:string		 direct
parameters *
Parameter		 direct
description 0..1
xsd:string		 direct
source 0..1
xsd:string		 direct
references *
xsd:string		 direct
derived_parameters *
DerivedParameter		 direct
derived_variables *
DerivedVariable		 direct
coupling_terms *
Parameter		 direct
coupling_inputs *
CouplingInput		 direct
state_variables *
StateVariable		 direct
modified 0..1
xsd:boolean		 direct
output *
xsd:string		 Output variable names to include in simulation results direct
derived_from_model 0..1
Dynamics		 direct
number_of_modes 0..1
xsd:integer		 direct
local_coupling_term 0..1
Parameter		 direct
functions *
Function		 direct
stimulus 0..1
Stimulus		 direct
modes *
Dynamics		 direct
system_type 0..1
SystemType		 direct

Usages

used by used in type used
Node dynamics range Dynamics
Dynamics derived_from_model range Dynamics
Dynamics modes range Dynamics
SimulationExperiment model range Dynamics
SimulationExperiment local_dynamics range Dynamics
SimulationExperiment dynamics range Dynamics
SimulationStudy model range Dynamics

Aliases

  • NeuralMassModel

Comments

  • Successor class replacing deprecated NeuralMassModel.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/tvbo

Mappings

Mapping Type Mapped Value
self tvbo:Dynamics
native tvbo:Dynamics

LinkML Source

Direct

name: Dynamics
comments:
- Successor class replacing deprecated NeuralMassModel.
from_schema: https://w3id.org/tvbo
aliases:
- NeuralMassModel
slots:
- has_reference
- name
- label
- iri
- parameters
- description
- source
- references
slot_usage:
  name:
    name: name
    ifabsent: Generic2dOscillator
  system_type:
    name: system_type
    ifabsent: continuous
attributes:
  derived_parameters:
    name: derived_parameters
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    - PDE
    range: DerivedParameter
    multivalued: true
    inlined: true
  derived_variables:
    name: derived_variables
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    - PDE
    range: DerivedVariable
    multivalued: true
    inlined: true
  coupling_terms:
    name: coupling_terms
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    range: Parameter
    multivalued: true
    inlined: true
  coupling_inputs:
    name: coupling_inputs
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    range: CouplingInput
    multivalued: true
    inlined: true
  state_variables:
    name: state_variables
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    - PDE
    range: StateVariable
    multivalued: true
    inlined: true
  modified:
    name: modified
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    range: boolean
  output:
    name: output
    description: Output variable names to include in simulation results. References
      to state_variables or derived_variables by name.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    - Function
    - FunctionCall
    range: string
    multivalued: true
  derived_from_model:
    name: derived_from_model
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    range: Dynamics
  number_of_modes:
    name: number_of_modes
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: integer(1)
    domain_of:
    - Dynamics
    range: integer
  local_coupling_term:
    name: local_coupling_term
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    range: Parameter
  functions:
    name: functions
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    - Algorithm
    - SimulationExperiment
    - PDE
    range: Function
    multivalued: true
    inlined: true
  stimulus:
    name: stimulus
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    range: Stimulus
    inlined: true
  modes:
    name: modes
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    range: Dynamics
    multivalued: true
    inlined: true
  system_type:
    name: system_type
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Dynamics
    range: SystemType
class_uri: tvbo:Dynamics

Induced

name: Dynamics
comments:
- Successor class replacing deprecated NeuralMassModel.
from_schema: https://w3id.org/tvbo
aliases:
- NeuralMassModel
slot_usage:
  name:
    name: name
    ifabsent: Generic2dOscillator
  system_type:
    name: system_type
    ifabsent: continuous
attributes:
  derived_parameters:
    name: derived_parameters
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: derived_parameters
    owner: Dynamics
    domain_of:
    - Dynamics
    - PDE
    range: DerivedParameter
    multivalued: true
    inlined: true
  derived_variables:
    name: derived_variables
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: derived_variables
    owner: Dynamics
    domain_of:
    - Dynamics
    - PDE
    range: DerivedVariable
    multivalued: true
    inlined: true
  coupling_terms:
    name: coupling_terms
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: coupling_terms
    owner: Dynamics
    domain_of:
    - Dynamics
    range: Parameter
    multivalued: true
    inlined: true
  coupling_inputs:
    name: coupling_inputs
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: coupling_inputs
    owner: Dynamics
    domain_of:
    - Dynamics
    range: CouplingInput
    multivalued: true
    inlined: true
  state_variables:
    name: state_variables
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: state_variables
    owner: Dynamics
    domain_of:
    - Dynamics
    - PDE
    range: StateVariable
    multivalued: true
    inlined: true
  modified:
    name: modified
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: modified
    owner: Dynamics
    domain_of:
    - Dynamics
    range: boolean
  output:
    name: output
    description: Output variable names to include in simulation results. References
      to state_variables or derived_variables by name.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: output
    owner: Dynamics
    domain_of:
    - Dynamics
    - Function
    - FunctionCall
    range: string
    multivalued: true
  derived_from_model:
    name: derived_from_model
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: derived_from_model
    owner: Dynamics
    domain_of:
    - Dynamics
    range: Dynamics
  number_of_modes:
    name: number_of_modes
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: integer(1)
    alias: number_of_modes
    owner: Dynamics
    domain_of:
    - Dynamics
    range: integer
  local_coupling_term:
    name: local_coupling_term
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: local_coupling_term
    owner: Dynamics
    domain_of:
    - Dynamics
    range: Parameter
  functions:
    name: functions
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: functions
    owner: Dynamics
    domain_of:
    - Dynamics
    - Algorithm
    - SimulationExperiment
    - PDE
    range: Function
    multivalued: true
    inlined: true
  stimulus:
    name: stimulus
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: stimulus
    owner: Dynamics
    domain_of:
    - Dynamics
    range: Stimulus
    inlined: true
  modes:
    name: modes
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: modes
    owner: Dynamics
    domain_of:
    - Dynamics
    range: Dynamics
    multivalued: true
    inlined: true
  system_type:
    name: system_type
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: continuous
    alias: system_type
    owner: Dynamics
    domain_of:
    - Dynamics
    range: SystemType
  has_reference:
    name: has_reference
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: has_reference
    owner: Dynamics
    domain_of:
    - Dynamics
    range: string
  name:
    name: name
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: Generic2dOscillator
    key: true
    alias: name
    owner: Dynamics
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - Tractogram
    - File
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - Algorithm
    - Coupling
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    range: string
    required: true
  label:
    name: label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: label
    owner: Dynamics
    domain_of:
    - ParcellationTerminology
    - Dataset
    - Contact
    - Equation
    - Stimulus
    - Parcellation
    - Tractogram
    - Matrix
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - TuningObjective
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  iri:
    name: iri
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: iri
    owner: Dynamics
    domain_of:
    - Dynamics
    - Function
    range: string
  parameters:
    name: parameters
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: parameters
    owner: Dynamics
    domain_of:
    - Equation
    - Stimulus
    - TemporalApplicableEquation
    - Node
    - Edge
    - Observation
    - Dynamics
    - Distribution
    - Noise
    - Exploration
    - Integrator
    - Coupling
    - PDE
    range: Parameter
    multivalued: true
    inlined: true
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: description
    owner: Dynamics
    domain_of:
    - ClinicalScore
    - Equation
    - Stimulus
    - Tractogram
    - Matrix
    - Network
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  source:
    name: source
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: source
    owner: Dynamics
    domain_of:
    - Edge
    - Observation
    - Dynamics
    range: string
  references:
    name: references
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: references
    owner: Dynamics
    domain_of:
    - Dynamics
    - SimulationExperiment
    range: string
    multivalued: true
class_uri: tvbo:Dynamics