Class: DataSource

Specification for loading external/empirical data.

URI: tvbo:class/DataSource

 classDiagram
    class DataSource
    click DataSource href "./DataSource.html"
      DataSource : description
        
          
    
        
        
        DataSource --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      DataSource : format
        
          
    
        
        
        DataSource --> "0..1" String : format
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      DataSource : key
        
          
    
        
        
        DataSource --> "0..1" String : key
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      DataSource : label
        
          
    
        
        
        DataSource --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      DataSource : loader
        
          
    
        
        
        DataSource --> "0..1" Callable : loader
        click Callable href "./Callable.html"
    

        
      DataSource : name
        
          
    
        
        
        DataSource --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      DataSource : path
        
          
    
        
        
        DataSource --> "0..1" String : path
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      DataSource : preprocessing
        
          
    
        
        
        DataSource --> "0..1" Function : preprocessing
        click Function href "./Function.html"
    

        
      

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 xsd:string		direct
label	0..1 xsd:string		direct
description	0..1 xsd:string		direct
path	0..1 xsd:string	File path or URI to the data	direct
loader	0..1 Callable	Callable that loads the data (e	direct
format	0..1 xsd:string	Data format: ‘npy’, ‘mat’, ‘csv’, ‘nifti’, etc	direct
key	0..1 xsd:string	Key/variable name within the file (for	direct
preprocessing	0..1 Function	Optional preprocessing to apply after loading	direct

Usages

used by	used in	type	used
Observation	data_source	range	DataSource
DerivedObservation	data_source	range	DataSource

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/tvbo

Mappings

Mapping Type	Mapped Value
self	tvbo:DataSource
native	tvbo:DataSource

LinkML Source

Direct

name: DataSource
description: Specification for loading external/empirical data.
from_schema: https://w3id.org/tvbo
slots:
- name
- label
- description
attributes:
  path:
    name: path
    description: File path or URI to the data
    from_schema: https://w3id.org/tvbo
    domain_of:
    - File
    - DataSource
    range: string
  loader:
    name: loader
    description: Callable that loads the data (e.g., load_functional_connectivity)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - DataSource
    range: Callable
    inlined: true
  format:
    name: format
    description: 'Data format: ''npy'', ''mat'', ''csv'', ''nifti'', etc.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - DataSource
    range: string
  key:
    name: key
    description: Key/variable name within the file (for .mat, .npz, etc.)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - DataSource
    - SimulationStudy
    range: string
  preprocessing:
    name: preprocessing
    description: Optional preprocessing to apply after loading
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - DataSource
    range: Function
    inlined: true

Induced

name: DataSource
description: Specification for loading external/empirical data.
from_schema: https://w3id.org/tvbo
attributes:
  path:
    name: path
    description: File path or URI to the data
    from_schema: https://w3id.org/tvbo
    alias: path
    owner: DataSource
    domain_of:
    - File
    - DataSource
    range: string
  loader:
    name: loader
    description: Callable that loads the data (e.g., load_functional_connectivity)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: loader
    owner: DataSource
    domain_of:
    - DataSource
    range: Callable
    inlined: true
  format:
    name: format
    description: 'Data format: ''npy'', ''mat'', ''csv'', ''nifti'', etc.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: format
    owner: DataSource
    domain_of:
    - DataSource
    range: string
  key:
    name: key
    description: Key/variable name within the file (for .mat, .npz, etc.)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: key
    owner: DataSource
    domain_of:
    - DataSource
    - SimulationStudy
    range: string
  preprocessing:
    name: preprocessing
    description: Optional preprocessing to apply after loading
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: preprocessing
    owner: DataSource
    domain_of:
    - DataSource
    range: Function
    inlined: true
  name:
    name: name
    from_schema: https://w3id.org/tvbo
    rank: 1000
    key: true
    alias: name
    owner: DataSource
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - Tractogram
    - File
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - Algorithm
    - Coupling
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    range: string
    required: true
  label:
    name: label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: label
    owner: DataSource
    domain_of:
    - ParcellationTerminology
    - Dataset
    - Contact
    - Equation
    - Stimulus
    - Parcellation
    - Tractogram
    - Matrix
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - TuningObjective
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: description
    owner: DataSource
    domain_of:
    - ClinicalScore
    - Equation
    - Stimulus
    - Tractogram
    - Matrix
    - Network
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - TuningObjective
    - Algorithm
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string