Class: Network

Network specification with nodes, edges, and reusable coupling configurations. Supports both explicit node/edge representation and matrix-based connectivity (Connectome compatibility).

URI: tvbo:Network

 classDiagram
    class Network
    click Network href "./Network.html"
      Network : bids
        
          
    
        
        
        Network --> "0..1" BidsEntities : bids
        click BidsEntities href "./BidsEntities.html"
    

        
      Network : bids_dir
        
          
    
        
        
        Network --> "0..1" String : bids_dir
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : coordinate_space
        
          
    
        
        
        Network --> "0..1" CommonCoordinateSpace : coordinate_space
        click CommonCoordinateSpace href "./CommonCoordinateSpace.html"
    

        
      Network : coupling
        
          
    
        
        
        Network --> "*" Coupling : coupling
        click Coupling href "./Coupling.html"
    

        
      Network : data_file
        
          
    
        
        
        Network --> "0..1" String : data_file
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : description
        
          
    
        
        
        Network --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : descriptor
        
          
    
        
        
        Network --> "0..1" String : descriptor
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : distance_unit
        
          
    
        
        
        Network --> "0..1" UnitEnum : distance_unit
        click UnitEnum href "../../enums/UnitEnum.html"
    

        
      Network : dynamics
        
          
    
        
        
        Network --> "*" Dynamics : dynamics
        click Dynamics href "./Dynamics.html"
    

        
      Network : edge_matrix_files
        
          
    
        
        
        Network --> "*" File : edge_matrix_files
        click File href "./File.html"
    

        
      Network : edge_template
        
          
    
        
        
        Network --> "0..1" Edge : edge_template
        click Edge href "./Edge.html"
    

        
      Network : edges
        
          
    
        
        
        Network --> "*" Edge : edges
        click Edge href "./Edge.html"
    

        
      Network : graph_generator
        
          
    
        
        
        Network --> "0..1" GraphGenerator : graph_generator
        click GraphGenerator href "./GraphGenerator.html"
    

        
      Network : graph_representation
        
          
    
        
        
        Network --> "0..1" GraphRepresentation : graph_representation
        click GraphRepresentation href "../../enums/GraphRepresentation.html"
    

        
      Network : integration
        
          
    
        
        
        Network --> "0..1" Integrator : integration
        click Integrator href "./Integrator.html"
    

        
      Network : label
        
          
    
        
        
        Network --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : mesh
        
          
    
        
        
        Network --> "0..1" Mesh : mesh
        click Mesh href "./Mesh.html"
    

        
      Network : node_mapping
        
          
    
        
        
        Network --> "0..1" String : node_mapping
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : node_template
        
          
    
        
        
        Network --> "0..1" Node : node_template
        click Node href "./Node.html"
    

        
      Network : nodes
        
          
    
        
        
        Network --> "*" Node : nodes
        click Node href "./Node.html"
    

        
      Network : number_of_nodes
        
          
    
        
        
        Network --> "0..1" Integer : number_of_nodes
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      Network : observational_measures
        
          
    
        
        
        Network --> "*" String : observational_measures
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : parameters
        
          
    
        
        
        Network --> "*" Parameter : parameters
        click Parameter href "./Parameter.html"
    

        
      Network : parcellation
        
          
    
        
        
        Network --> "0..1" Parcellation : parcellation
        click Parcellation href "./Parcellation.html"
    

        
      Network : parent_network
        
          
    
        
        
        Network --> "0..1" String : parent_network
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : primary_weight
        
          
    
        
        
        Network --> "0..1" String : primary_weight
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : provenance
        
          
    
        
        
        Network --> "0..1" Provenance : provenance
        click Provenance href "./Provenance.html"
    

        
      Network : structural_measures
        
          
    
        
        
        Network --> "*" String : structural_measures
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Network : time_unit
        
          
    
        
        
        Network --> "0..1" UnitEnum : time_unit
        click UnitEnum href "../../enums/UnitEnum.html"
    

        
      Network : tractogram
        
          
    
        
        
        Network --> "0..1" Tractogram : tractogram
        click Tractogram href "./Tractogram.html"
    

        
      Network : transforms
        
          
    
        
        
        Network --> "*" Function : transforms
        click Function href "./Function.html"

Class Properties

Property Value
Class URI tvbo:Network

Slots

Name Cardinality and Range Description Inheritance
label 0..1
xsd:string		 direct
description 0..1
xsd:string		 direct
parameters *
Parameter		 direct
provenance 0..1
Provenance		 W3C PROV-O aligned provenance for this entity — what it was derived from, whi… direct
time_unit 0..1
UnitEnum		 Unit of every time-valued number in this scope — the step size, any period, a… direct
integration 0..1
Integrator		 Clock this network’s nodes run on direct
nodes *
Node		 List of nodes with individual dynamics (optional, for heterogeneous networks) direct
edges *
Edge		 List of directed edges with coupling references (optional, for explicit edge … direct
primary_weight 0..1
xsd:string		 Name of the edge group that should serve as the canonical weights matrix when… direct
coupling *
Coupling		 How activity travels along this network’s connections — the one place a coupl… direct
graph_representation 0..1
GraphRepresentation		 Representation used to evaluate coupling over this network’s connectivity (``… direct
dynamics *
Dynamics		 Dictionary of dynamics models keyed by name direct
node_template 0..1
Node		 Default Node attributes applied to every Node in this Network direct
edge_template 0..1
Edge		 Default Edge attributes applied to every Edge in this Network direct
number_of_nodes 0..1
xsd:integer		 Number of nodes in the network (derived from nodes if not set) direct
coordinate_space 0..1
CommonCoordinateSpace		 Coordinate space for node positions (e direct
parcellation 0..1
Parcellation		 Brain parcellation/atlas reference direct
tractogram 0..1
Tractogram		 Reference to tractography data direct
mesh 0..1
Mesh		 Optional triangle mesh geometry direct
transforms *
Function		 Ordered list of transforms applied to edge property matrices direct
data_file 0..1
xsd:string		 Path to companion data file direct
descriptor 0..1
xsd:string		 Short alphanumeric identifier for the BIDS desc- filename entity (e direct
bids_dir 0..1
xsd:string		 Path to BEP017-compliant BIDS directory for loading connectivity matrices direct
bids 0..1
BidsEntities		 BIDS filename entities for this dataset direct
structural_measures *
xsd:string		 BEP017 measure names for structural connectivity (e direct
observational_measures *
xsd:string		 BEP017 measure names for observational targets (e direct
parent_network 0..1
xsd:string		 Path/URI to parent (coarser) Network direct
node_mapping 0..1
xsd:string		 HDF5 dataset path for node-to-parent mapping direct
distance_unit 0..1
UnitEnum		 Unit for distances/lengths in the network direct
edge_matrix_files *
File		 direct
graph_generator 0..1
GraphGenerator		 Graph generator specification direct

Usages

used by used in type used
Node subnetwork range Network
Coupling regional_connectivity range Network
SimulationExperiment connectivity range Network
SimulationExperiment network range Network

Aliases

  • Network
  • Connectome
  • Graph
  • Connectivity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/tvbo

Mappings

Mapping Type Mapped Value
self tvbo:Network
native tvbo:Network

LinkML Source

Direct

name: Network
description: Network specification with nodes, edges, and reusable coupling configurations.
  Supports both explicit node/edge representation and matrix-based connectivity (Connectome
  compatibility).
from_schema: https://w3id.org/tvbo
aliases:
- Network
- Connectome
- Graph
- Connectivity
slots:
- label
- description
- parameters
- provenance
- time_unit
attributes:
  integration:
    name: integration
    description: 'Clock this network''s nodes run on. A subnetwork declaring its own
      is how a finer scale runs on a finer step than its parent: the fold reads both
      and converts between their `time_unit`, since a factor of 1000 living only in
      a modeller''s head is invisible in every backend''s output.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    - Optimization
    - Inference
    - SimulationExperiment
    range: Integrator
    inlined: true
  nodes:
    name: nodes
    description: List of nodes with individual dynamics (optional, for heterogeneous
      networks)
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Event
    - Network
    range: Node
    multivalued: true
    inlined_as_list: true
  edges:
    name: edges
    description: List of directed edges with coupling references (optional, for explicit
      edge definition)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: Edge
    multivalued: true
    inlined_as_list: true
  primary_weight:
    name: primary_weight
    description: Name of the edge group that should serve as the canonical weights
      matrix when ``weights_matrix`` is queried. Lets a single Network sidecar bundle
      several connectivity variants (e.g. band-specific NMF reweightings, distance-modulated
      SC, shuffled controls) under different edge names while still presenting one
      of them as the active weight to consumers (simulators, observation pipelines).
      Defaults to ``weight`` / ``weights`` / ``sc`` lookup when not set.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: string
  coupling:
    name: coupling
    description: How activity travels along this network's connections — the one place
      a coupling function is declared, because a coupling acts over a connectivity
      and has no meaning without one. Keyed by the role each plays in the network
      ('excitatory', 'delayed', 'inhibitory'), so a network may carry several and
      an edge names the one it uses. A network with a single coupling applies it to
      every edge.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    - Edge
    range: Coupling
    multivalued: true
    inlined: true
  graph_representation:
    name: graph_representation
    description: Representation used to evaluate coupling over this network's connectivity
      (``auto`` | ``dense`` | ``sparse``). ``auto`` lets the backend choose by connection
      density. This names whether to exploit edge sparsity, not a concrete data structure,
      so it is backend-independent; the delayed-vs-instantaneous graph kind is decided
      separately from the couplings' conduction delays.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: string(auto)
    domain_of:
    - Network
    range: GraphRepresentation
  dynamics:
    name: dynamics
    description: Dictionary of dynamics models keyed by name. Nodes reference these
      by name. For heterogeneous networks with per-node dynamics.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    - Node
    - Edge
    - Observation
    - Continuation
    - SimulationExperiment
    range: Dynamics
    multivalued: true
    inlined: true
  node_template:
    name: node_template
    description: Default Node attributes applied to every Node in this Network. Explicit
      entries in `nodes:` override the template field-by-field (shallow replace, same
      semantics as `dict.update`). Reserved per-Node slots (id, label, position, region)
      come from the data backbone (Network.iri-loaded parcellation or procedural generator)
      and are ignored if set on the template. Lets a homogeneous Network declare its
      per-Node configuration once without enumerating regions.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: Node
    required: false
    inlined: true
  edge_template:
    name: edge_template
    description: Default Edge attributes applied to every Edge in this Network. Explicit
      entries in `edges:` override the template field-by-field. Reserved per-Edge
      slots (source, target, weight, delay, distance) come from the data backbone
      (loaded matrix or procedural generator) and are ignored if set on the template.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: Edge
    required: false
    inlined: true
  number_of_nodes:
    name: number_of_nodes
    description: Number of nodes in the network (derived from nodes if not set)
    from_schema: https://w3id.org/tvbo
    aliases:
    - number_of_nodes
    - number_of_regions
    rank: 1000
    domain_of:
    - Network
    range: integer
  coordinate_space:
    name: coordinate_space
    description: Coordinate space for node positions (e.g., MNI152NLin2009c). Mirrors
      BrainAtlas.coordinateSpace so network node positions are unambiguous.
    from_schema: https://w3id.org/tvbo
    domain_of:
    - DBSDataset
    - DBSSubject
    - Electrode
    - EField
    - Network
    - SpatialDomain
    - Mesh
    range: CommonCoordinateSpace
    inlined: true
  parcellation:
    name: parcellation
    description: Brain parcellation/atlas reference
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    - Mesh
    range: Parcellation
    inlined: true
  tractogram:
    name: tractogram
    description: Reference to tractography data
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: Tractogram
    inlined: true
  mesh:
    name: mesh
    description: Optional triangle mesh geometry. When set, the Network carries triangle
      faces (and optionally normals, curvature) alongside its node coordinates. Used
      by surface-based observations (cortical wave detection, Helmholtz-Hodge decomposition,
      spectrospatial mode analysis). Mesh face data lives in the same h5 companion
      under a ``mesh/`` group.
    from_schema: https://w3id.org/tvbo
    domain_of:
    - Surface
    - Network
    - SpatialField
    - FieldStateVariable
    - PDE
    range: Mesh
    inlined: true
  transforms:
    name: transforms
    description: Ordered list of transforms applied to edge property matrices. Each
      entry's `name:` is the edge property it rewrites (e.g. 'weight', 'length'),
      and that property is also the value under transform inside the entry's own equation,
      which is written over the network's edge attributes. Supports equation-based
      (symbolic) or callable-based (software) transforms. Multiple transforms on the
      same target are applied sequentially, each seeing the previous one's output.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: Function
    multivalued: true
    inlined_as_list: true
  data_file:
    name: data_file
    description: 'Path to companion data file. Supported extensions: .h5 (HDF5), .zarr/
      (Zarr), .csv (legacy single-matrix). Null if no companion data needed.'
    from_schema: https://w3id.org/tvbo
    domain_of:
    - ExperimentResultSidecar
    - Phenotype
    - Network
    range: string
  descriptor:
    name: descriptor
    description: Short alphanumeric identifier for the BIDS desc- filename entity
      (e.g., SC, FC, EC, SCFC). Classifies the connectivity modality of the network's
      edge measures.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: string
  bids_dir:
    name: bids_dir
    description: Path to BEP017-compliant BIDS directory for loading connectivity
      matrices
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: string
  bids:
    name: bids
    description: BIDS filename entities for this dataset
    from_schema: https://w3id.org/tvbo
    domain_of:
    - StudyDirectory
    - StudyFile
    - Network
    range: BidsEntities
    inlined: true
  structural_measures:
    name: structural_measures
    description: BEP017 measure names for structural connectivity (e.g., streamlineCount,
      tractLength)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: string
    multivalued: true
  observational_measures:
    name: observational_measures
    description: BEP017 measure names for observational targets (e.g., BoldCorrelation)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: string
    multivalued: true
  parent_network:
    name: parent_network
    description: Path/URI to parent (coarser) Network. When set, this network is a
      refinement where each node maps to exactly one parent node via node_mapping.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: string
  node_mapping:
    name: node_mapping
    description: HDF5 dataset path for node-to-parent mapping. Int32 array of shape
      (N,) where entry i is the parent node ID. Required when parent_network is set.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: string
  distance_unit:
    name: distance_unit
    description: Unit for distances/lengths in the network
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: string(mm)
    domain_of:
    - Network
    range: UnitEnum
  edge_matrix_files:
    name: edge_matrix_files
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: File
    multivalued: true
  graph_generator:
    name: graph_generator
    description: 'Graph generator specification.  When set, overrides explicit edges/nodes
      for graph construction.  The type field is a free string; StandardGraphType
      lists well-known types that get automatic code generation across backends.

      '
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Network
    range: GraphGenerator
    inlined: true
class_uri: tvbo:Network

Induced

name: Network
description: Network specification with nodes, edges, and reusable coupling configurations.
  Supports both explicit node/edge representation and matrix-based connectivity (Connectome
  compatibility).
from_schema: https://w3id.org/tvbo
aliases:
- Network
- Connectome
- Graph
- Connectivity
attributes:
  integration:
    name: integration
    description: 'Clock this network''s nodes run on. A subnetwork declaring its own
      is how a finer scale runs on a finer step than its parent: the fold reads both
      and converts between their `time_unit`, since a factor of 1000 living only in
      a modeller''s head is invisible in every backend''s output.'
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    - Optimization
    - Inference
    - SimulationExperiment
    range: Integrator
    inlined: true
  nodes:
    name: nodes
    description: List of nodes with individual dynamics (optional, for heterogeneous
      networks)
    from_schema: https://w3id.org/tvbo
    owner: Network
    domain_of:
    - Event
    - Network
    range: Node
    multivalued: true
    inlined: true
    inlined_as_list: true
  edges:
    name: edges
    description: List of directed edges with coupling references (optional, for explicit
      edge definition)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: Edge
    multivalued: true
    inlined: true
    inlined_as_list: true
  primary_weight:
    name: primary_weight
    description: Name of the edge group that should serve as the canonical weights
      matrix when ``weights_matrix`` is queried. Lets a single Network sidecar bundle
      several connectivity variants (e.g. band-specific NMF reweightings, distance-modulated
      SC, shuffled controls) under different edge names while still presenting one
      of them as the active weight to consumers (simulators, observation pipelines).
      Defaults to ``weight`` / ``weights`` / ``sc`` lookup when not set.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: string
  coupling:
    name: coupling
    description: How activity travels along this network's connections — the one place
      a coupling function is declared, because a coupling acts over a connectivity
      and has no meaning without one. Keyed by the role each plays in the network
      ('excitatory', 'delayed', 'inhibitory'), so a network may carry several and
      an edge names the one it uses. A network with a single coupling applies it to
      every edge.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    - Edge
    range: Coupling
    multivalued: true
    inlined: true
  graph_representation:
    name: graph_representation
    description: Representation used to evaluate coupling over this network's connectivity
      (``auto`` | ``dense`` | ``sparse``). ``auto`` lets the backend choose by connection
      density. This names whether to exploit edge sparsity, not a concrete data structure,
      so it is backend-independent; the delayed-vs-instantaneous graph kind is decided
      separately from the couplings' conduction delays.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: string(auto)
    owner: Network
    domain_of:
    - Network
    range: GraphRepresentation
  dynamics:
    name: dynamics
    description: Dictionary of dynamics models keyed by name. Nodes reference these
      by name. For heterogeneous networks with per-node dynamics.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    - Node
    - Edge
    - Observation
    - Continuation
    - SimulationExperiment
    range: Dynamics
    multivalued: true
    inlined: true
  node_template:
    name: node_template
    description: Default Node attributes applied to every Node in this Network. Explicit
      entries in `nodes:` override the template field-by-field (shallow replace, same
      semantics as `dict.update`). Reserved per-Node slots (id, label, position, region)
      come from the data backbone (Network.iri-loaded parcellation or procedural generator)
      and are ignored if set on the template. Lets a homogeneous Network declare its
      per-Node configuration once without enumerating regions.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: Node
    required: false
    inlined: true
  edge_template:
    name: edge_template
    description: Default Edge attributes applied to every Edge in this Network. Explicit
      entries in `edges:` override the template field-by-field. Reserved per-Edge
      slots (source, target, weight, delay, distance) come from the data backbone
      (loaded matrix or procedural generator) and are ignored if set on the template.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: Edge
    required: false
    inlined: true
  number_of_nodes:
    name: number_of_nodes
    description: Number of nodes in the network (derived from nodes if not set)
    from_schema: https://w3id.org/tvbo
    aliases:
    - number_of_nodes
    - number_of_regions
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: integer
  coordinate_space:
    name: coordinate_space
    description: Coordinate space for node positions (e.g., MNI152NLin2009c). Mirrors
      BrainAtlas.coordinateSpace so network node positions are unambiguous.
    from_schema: https://w3id.org/tvbo
    owner: Network
    domain_of:
    - DBSDataset
    - DBSSubject
    - Electrode
    - EField
    - Network
    - SpatialDomain
    - Mesh
    range: CommonCoordinateSpace
    inlined: true
  parcellation:
    name: parcellation
    description: Brain parcellation/atlas reference
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    - Mesh
    range: Parcellation
    inlined: true
  tractogram:
    name: tractogram
    description: Reference to tractography data
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: Tractogram
    inlined: true
  mesh:
    name: mesh
    description: Optional triangle mesh geometry. When set, the Network carries triangle
      faces (and optionally normals, curvature) alongside its node coordinates. Used
      by surface-based observations (cortical wave detection, Helmholtz-Hodge decomposition,
      spectrospatial mode analysis). Mesh face data lives in the same h5 companion
      under a ``mesh/`` group.
    from_schema: https://w3id.org/tvbo
    owner: Network
    domain_of:
    - Surface
    - Network
    - SpatialField
    - FieldStateVariable
    - PDE
    range: Mesh
    inlined: true
  transforms:
    name: transforms
    description: Ordered list of transforms applied to edge property matrices. Each
      entry's `name:` is the edge property it rewrites (e.g. 'weight', 'length'),
      and that property is also the value under transform inside the entry's own equation,
      which is written over the network's edge attributes. Supports equation-based
      (symbolic) or callable-based (software) transforms. Multiple transforms on the
      same target are applied sequentially, each seeing the previous one's output.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: Function
    multivalued: true
    inlined: true
    inlined_as_list: true
  data_file:
    name: data_file
    description: 'Path to companion data file. Supported extensions: .h5 (HDF5), .zarr/
      (Zarr), .csv (legacy single-matrix). Null if no companion data needed.'
    from_schema: https://w3id.org/tvbo
    owner: Network
    domain_of:
    - ExperimentResultSidecar
    - Phenotype
    - Network
    range: string
  descriptor:
    name: descriptor
    description: Short alphanumeric identifier for the BIDS desc- filename entity
      (e.g., SC, FC, EC, SCFC). Classifies the connectivity modality of the network's
      edge measures.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: string
  bids_dir:
    name: bids_dir
    description: Path to BEP017-compliant BIDS directory for loading connectivity
      matrices
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: string
  bids:
    name: bids
    description: BIDS filename entities for this dataset
    from_schema: https://w3id.org/tvbo
    owner: Network
    domain_of:
    - StudyDirectory
    - StudyFile
    - Network
    range: BidsEntities
    inlined: true
  structural_measures:
    name: structural_measures
    description: BEP017 measure names for structural connectivity (e.g., streamlineCount,
      tractLength)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: string
    multivalued: true
  observational_measures:
    name: observational_measures
    description: BEP017 measure names for observational targets (e.g., BoldCorrelation)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: string
    multivalued: true
  parent_network:
    name: parent_network
    description: Path/URI to parent (coarser) Network. When set, this network is a
      refinement where each node maps to exactly one parent node via node_mapping.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: string
  node_mapping:
    name: node_mapping
    description: HDF5 dataset path for node-to-parent mapping. Int32 array of shape
      (N,) where entry i is the parent node ID. Required when parent_network is set.
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: string
  distance_unit:
    name: distance_unit
    description: Unit for distances/lengths in the network
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: string(mm)
    owner: Network
    domain_of:
    - Network
    range: UnitEnum
  edge_matrix_files:
    name: edge_matrix_files
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: File
    multivalued: true
  graph_generator:
    name: graph_generator
    description: 'Graph generator specification.  When set, overrides explicit edges/nodes
      for graph construction.  The type field is a free string; StandardGraphType
      lists well-known types that get automatic code generation across backends.

      '
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Network
    range: GraphGenerator
    inlined: true
  label:
    name: label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    slot_uri: rdfs:label
    owner: Network
    domain_of:
    - ParcellationTerminology
    - Subject
    - Session
    - Dataset
    - Contact
    - SoftwareEnvironment
    - Figure
    - Panel
    - Inset
    - Layer
    - Colorbar
    - Rule
    - Equation
    - Stimulus
    - Event
    - Parcellation
    - Tractogram
    - Matrix
    - Phenotype
    - Network
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - FunctionCall
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - AlgorithmStage
    - TuningObjective
    - Continuation
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    slot_uri: dcterms:description
    owner: Network
    domain_of:
    - CommonCoordinateSpace
    - Dataset
    - StudyLayout
    - StudyTemplate
    - StudyDirectory
    - StudyFile
    - ClinicalScore
    - SoftwarePackage
    - SoftwareRequirement
    - SoftwareEnvironment
    - Figure
    - Panel
    - Equation
    - Stimulus
    - Event
    - Tractogram
    - Matrix
    - ResultEntity
    - Activity
    - Phenotype
    - MeasureSpec
    - NamedArray
    - Network
    - GraphGenerator
    - ProcedureStep
    - File
    - Node
    - Edge
    - Observation
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - FunctionCall
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - DataSource
    - OptimizationStage
    - Exploration
    - ExplorationAxis
    - FreeParameter
    - Inference
    - Prior
    - Likelihood
    - UpdateRule
    - AlgorithmStage
    - TuningObjective
    - Algorithm
    - BranchSwitch
    - Continuation
    - Integrator
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - Study
    - ResultBinding
    - TimeSeries
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    - Reducer
    range: string
  parameters:
    name: parameters
    from_schema: https://w3id.org/tvbo
    rank: 1000
    owner: Network
    domain_of:
    - Equation
    - Stimulus
    - Event
    - ExperimentResultSidecar
    - Network
    - GraphGenerator
    - Node
    - Edge
    - Observation
    - Analysis
    - Dynamics
    - Distribution
    - Noise
    - Exploration
    - Discretization
    - BranchSwitch
    - Integrator
    - Coupling
    - PDE
    range: Parameter
    multivalued: true
    inlined: true
  provenance:
    name: provenance
    description: W3C PROV-O aligned provenance for this entity — what it was derived
      from, which agent produced it, and when.
    from_schema: https://w3id.org/tvbo
    close_mappings:
    - prov:wasGeneratedBy
    rank: 1000
    owner: Network
    domain_of:
    - Figure
    - ResultEntity
    - ExperimentResultSidecar
    - Phenotype
    - Network
    - SimulationExperiment
    range: Provenance
    inlined: true
  time_unit:
    name: time_unit
    description: 'Unit of every time-valued number in this scope — the step size,
      any period, and the physical meaning of one model time-step. Declared at whichever
      scope owns the clock (network, integrator, observation); `tvbo.utils.units.time_unit_of`
      resolves a scope to its effective unit by walking outwards, and states the `ms`
      fallback once, at the end of that walk. Deliberately carries no default: a defaulted
      slot cannot be inherited through, so `ifabsent: ms` made an unset unit indistinguishable
      from one someone wrote, and masked an explicitly declared `s` one scope out.
      `time_scale` is accepted as a synonym.'
    from_schema: https://w3id.org/tvbo
    aliases:
    - time_scale
    rank: 1000
    owner: Network
    domain_of:
    - Network
    - Observation
    - Integrator
    range: UnitEnum
class_uri: tvbo:Network