Class: ParcellationEntity

A schema for representing a parcellation entity, which is an anatomical location or study target.

URI: atom:atlas/Region

 classDiagram
    class ParcellationEntity
    click ParcellationEntity href "./ParcellationEntity.html"
      ParcellationEntity : abbreviation
        
          
    
        
        
        ParcellationEntity --> "0..1" String : abbreviation
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      ParcellationEntity : alternateName
        
          
    
        
        
        ParcellationEntity --> "*" String : alternateName
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      ParcellationEntity : center
        
          
    
        
        
        ParcellationEntity --> "0..1" Coordinate : center
        click Coordinate href "./Coordinate.html"
    

        
      ParcellationEntity : color
        
          
    
        
        
        ParcellationEntity --> "0..1" String : color
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      ParcellationEntity : hasParent
        
          
    
        
        
        ParcellationEntity --> "*" ParcellationEntity : hasParent
        click ParcellationEntity href "./ParcellationEntity.html"
    

        
      ParcellationEntity : hemisphere
        
          
    
        
        
        ParcellationEntity --> "0..1" Hemisphere : hemisphere
        click Hemisphere href "../../enums/Hemisphere.html"
    

        
      ParcellationEntity : lookupLabel
        
          
    
        
        
        ParcellationEntity --> "0..1" Integer : lookupLabel
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      ParcellationEntity : name
        
          
    
        
        
        ParcellationEntity --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      ParcellationEntity : ontologyIdentifier
        
          
    
        
        
        ParcellationEntity --> "*" String : ontologyIdentifier
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      ParcellationEntity : originalLookupLabel
        
          
    
        
        
        ParcellationEntity --> "0..1" Integer : originalLookupLabel
        click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html"
    

        
      ParcellationEntity : relatedUBERONTerm
        
          
    
        
        
        ParcellationEntity --> "0..1" String : relatedUBERONTerm
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      ParcellationEntity : versionIdentifier
        
          
    
        
        
        ParcellationEntity --> "0..1" String : versionIdentifier
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"

Slots

Name Cardinality and Range Description Inheritance
abbreviation 0..1
xsd:string		 Slot for the abbreviation of a resource direct
alternateName *
xsd:string		 Enter any alternate names, including abbreviations, for this entity direct
lookupLabel 0..1
xsd:integer		 Enter the label used for looking up this entity in the parcellation terminolo… direct
hasParent *
ParcellationEntity		 Add all anatomical parent structures for this entity as defined within the co… direct
name 1
xsd:string		 direct
ontologyIdentifier *
xsd:string		 Enter the internationalized resource identifier (IRI) to the related ontologi… direct
versionIdentifier 0..1
xsd:string		 Enter the version identifier of this brain atlas or coordinate space version direct
relatedUBERONTerm 0..1
xsd:string		 Add the related anatomical entity as defined by the UBERON ontology direct
originalLookupLabel 0..1
xsd:integer		 Add the original label of this entity as defined in the parcellation terminol… direct
hemisphere 0..1
Hemisphere		 Add the hemisphere of this entity direct
center 0..1
Coordinate		 Add the center coordinate of this entity direct
color 0..1
xsd:string		 Add the color code used for visual representation of this entity direct

Usages

used by used in type used
ParcellationEntity hasParent range ParcellationEntity
ParcellationTerminology entities range ParcellationEntity
Electrode target_structure range ParcellationEntity

Identifier and Mapping Information

Schema Source

  • from schema: https://openminds.ebrains.eu/sands/BrainAtlas

Mappings

Mapping Type Mapped Value
self atom:atlas/Region
native atom:ParcellationEntity

LinkML Source

Direct

name: ParcellationEntity
description: A schema for representing a parcellation entity, which is an anatomical
  location or study target.
from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
categories:
- anatomicalLocation
- studyTarget
slots:
- abbreviation
- alternateName
- lookupLabel
- hasParent
- name
- ontologyIdentifier
- versionIdentifier
attributes:
  relatedUBERONTerm:
    name: relatedUBERONTerm
    description: Add the related anatomical entity as defined by the UBERON ontology.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - ParcellationEntity
    range: string
  originalLookupLabel:
    name: originalLookupLabel
    description: Add the original label of this entity as defined in the parcellation
      terminology.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - ParcellationEntity
    range: integer
  hemisphere:
    name: hemisphere
    description: Add the hemisphere of this entity.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - ParcellationEntity
    - Electrode
    range: Hemisphere
  center:
    name: center
    description: Add the center coordinate of this entity.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - ParcellationEntity
    range: Coordinate
  color:
    name: color
    description: Add the color code used for visual representation of this entity.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    domain_of:
    - ParcellationEntity
    range: string
class_uri: atom:atlas/Region

Induced

name: ParcellationEntity
description: A schema for representing a parcellation entity, which is an anatomical
  location or study target.
from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
categories:
- anatomicalLocation
- studyTarget
attributes:
  relatedUBERONTerm:
    name: relatedUBERONTerm
    description: Add the related anatomical entity as defined by the UBERON ontology.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    alias: relatedUBERONTerm
    owner: ParcellationEntity
    domain_of:
    - ParcellationEntity
    range: string
  originalLookupLabel:
    name: originalLookupLabel
    description: Add the original label of this entity as defined in the parcellation
      terminology.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    alias: originalLookupLabel
    owner: ParcellationEntity
    domain_of:
    - ParcellationEntity
    range: integer
  hemisphere:
    name: hemisphere
    description: Add the hemisphere of this entity.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    alias: hemisphere
    owner: ParcellationEntity
    domain_of:
    - ParcellationEntity
    - Electrode
    range: Hemisphere
  center:
    name: center
    description: Add the center coordinate of this entity.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    alias: center
    owner: ParcellationEntity
    domain_of:
    - ParcellationEntity
    range: Coordinate
  color:
    name: color
    description: Add the color code used for visual representation of this entity.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    rank: 1000
    alias: color
    owner: ParcellationEntity
    domain_of:
    - ParcellationEntity
    range: string
  abbreviation:
    name: abbreviation
    description: Slot for the abbreviation of a resource.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    alias: abbreviation
    owner: ParcellationEntity
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    range: string
  alternateName:
    name: alternateName
    description: Enter any alternate names, including abbreviations, for this entity.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    slot_uri: atom:atlas/hasName
    alias: alternateName
    owner: ParcellationEntity
    domain_of:
    - ParcellationEntity
    range: string
    multivalued: true
  lookupLabel:
    name: lookupLabel
    description: Enter the label used for looking up this entity in the parcellation
      terminology.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    slot_uri: atom:atlas/lookupLabel
    alias: lookupLabel
    owner: ParcellationEntity
    domain_of:
    - ParcellationEntity
    range: integer
  hasParent:
    name: hasParent
    description: Add all anatomical parent structures for this entity as defined within
      the corresponding brain atlas.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    slot_uri: atom:atlas/hasParent
    alias: hasParent
    owner: ParcellationEntity
    domain_of:
    - ParcellationEntity
    range: ParcellationEntity
    multivalued: true
  name:
    name: name
    from_schema: https://w3id.org/tvbo
    rank: 1000
    key: true
    alias: name
    owner: ParcellationEntity
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - Tractogram
    - File
    - Observation
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Argument
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - DataSource
    - OptimizationStage
    - Exploration
    - UpdateRule
    - Algorithm
    - Coupling
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    range: string
    required: true
  ontologyIdentifier:
    name: ontologyIdentifier
    description: Enter the internationalized resource identifier (IRI) to the related
      ontological terms.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    slot_uri: atom:atlas/hasIlxId
    alias: ontologyIdentifier
    owner: ParcellationEntity
    domain_of:
    - ParcellationEntity
    - ParcellationTerminology
    range: string
    multivalued: true
  versionIdentifier:
    name: versionIdentifier
    description: Enter the version identifier of this brain atlas or coordinate space
      version.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    alias: versionIdentifier
    owner: ParcellationEntity
    domain_of:
    - BrainAtlas
    - ParcellationEntity
    - ParcellationTerminology
    range: string
class_uri: atom:atlas/Region