Class: Monitor

Observation model for monitoring simulation output with optional processing pipeline

URI: tvbo:Monitor

 classDiagram
    class Monitor
    click Monitor href "./Monitor.html"
      ObservationModel <|-- Monitor
        click ObservationModel href "./ObservationModel.html"
      
      Monitor : acronym
        
          
    
        
        
        Monitor --> "0..1" String : acronym
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Monitor : argument_mappings
        
          
    
        
        
        Monitor --> "*" ArgumentMapping : argument_mappings
        click ArgumentMapping href "./ArgumentMapping.html"
    

        
      Monitor : data_injections
        
          
    
        
        
        Monitor --> "*" DataInjection : data_injections
        click DataInjection href "./DataInjection.html"
    

        
      Monitor : derivatives
        
          
    
        
        
        Monitor --> "*" DerivedVariable : derivatives
        click DerivedVariable href "./DerivedVariable.html"
    

        
      Monitor : description
        
          
    
        
        
        Monitor --> "0..1" String : description
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Monitor : environment
        
          
    
        
        
        Monitor --> "0..1" SoftwareEnvironment : environment
        click SoftwareEnvironment href "./SoftwareEnvironment.html"
    

        
      Monitor : equation
        
          
    
        
        
        Monitor --> "0..1" Equation : equation
        click Equation href "./Equation.html"
    

        
      Monitor : imaging_modality
        
          
    
        
        
        Monitor --> "0..1" ImagingModality : imaging_modality
        click ImagingModality href "../../enums/ImagingModality.html"
    

        
      Monitor : label
        
          
    
        
        
        Monitor --> "0..1" String : label
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Monitor : name
        
          
    
        
        
        Monitor --> "1" String : name
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Monitor : parameters
        
          
    
        
        
        Monitor --> "*" Parameter : parameters
        click Parameter href "./Parameter.html"
    

        
      Monitor : period
        
          
    
        
        
        Monitor --> "0..1" Float : period
        click Float href "../http://www.w3.org/2001/XMLSchema#float.html"
    

        
      Monitor : pipeline
        
          
    
        
        
        Monitor --> "*" ProcessingStep : pipeline
        click ProcessingStep href "./ProcessingStep.html"
    

        
      Monitor : time_scale
        
          
    
        
        
        Monitor --> "0..1" String : time_scale
        click String href "../http://www.w3.org/2001/XMLSchema#string.html"
    

        
      Monitor : transformation
        
          
    
        
        
        Monitor --> "0..1" Function : transformation
        click Function href "./Function.html"
    

        
      

Inheritance

• ObservationModel
  • Monitor

Slots

Name	Cardinality and Range	Description	Inheritance
time_scale	0..1 xsd:string		direct
name	1 xsd:string	Enter the name of this entity	direct
label	0..1 xsd:string		direct
parameters	* Parameter		direct
acronym	0..1 xsd:string		direct
description	0..1 xsd:string		direct
equation	0..1 Equation		direct
environment	0..1 SoftwareEnvironment		direct
period	0..1 xsd:float	Sampling period for the monitor	direct
imaging_modality	0..1 ImagingModality	Type of imaging modality (BOLD, EEG, MEG, etc	direct
transformation	0..1 Function		ObservationModel
pipeline	* ProcessingStep	Ordered sequence of processing functions	ObservationModel
data_injections	* DataInjection	External data added to the pipeline (e	ObservationModel
argument_mappings	* ArgumentMapping	How inputs/outputs connect between pipeline steps	ObservationModel
derivatives	* DerivedVariable	Side computations (e	ObservationModel

Usages

used by	used in	type	used
SimulationExperiment	monitors	range	Monitor

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/tvbo

Mappings

Mapping Type	Mapped Value
self	tvbo:Monitor
native	tvbo:Monitor

LinkML Source

Direct

name: Monitor
description: Observation model for monitoring simulation output with optional processing
  pipeline
from_schema: https://w3id.org/tvbo
is_a: ObservationModel
slots:
- time_scale
- name
- label
- parameters
- acronym
- description
- equation
- environment
attributes:
  period:
    name: period
    description: Sampling period for the monitor
    from_schema: https://w3id.org/tvbo
    domain_of:
    - DownsamplingModel
    - Monitor
    range: float
  imaging_modality:
    name: imaging_modality
    description: Type of imaging modality (BOLD, EEG, MEG, etc.)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    domain_of:
    - Monitor
    range: ImagingModality
class_uri: tvbo:Monitor

Induced

name: Monitor
description: Observation model for monitoring simulation output with optional processing
  pipeline
from_schema: https://w3id.org/tvbo
is_a: ObservationModel
attributes:
  period:
    name: period
    description: Sampling period for the monitor
    from_schema: https://w3id.org/tvbo
    alias: period
    owner: Monitor
    domain_of:
    - DownsamplingModel
    - Monitor
    range: float
  imaging_modality:
    name: imaging_modality
    description: Type of imaging modality (BOLD, EEG, MEG, etc.)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: imaging_modality
    owner: Monitor
    domain_of:
    - Monitor
    range: ImagingModality
  time_scale:
    name: time_scale
    from_schema: https://w3id.org/tvbo
    rank: 1000
    ifabsent: ms
    alias: time_scale
    owner: Monitor
    domain_of:
    - Integrator
    - Monitor
    range: string
  name:
    name: name
    description: Enter the name of this entity.
    from_schema: https://openminds.ebrains.eu/sands/BrainAtlas
    slot_uri: atom:atlas/hasName
    alias: name
    owner: Monitor
    domain_of:
    - BrainAtlas
    - CommonCoordinateSpace
    - ParcellationEntity
    - DBSProtocol
    - ClinicalScale
    - ClinicalScore
    - ObservationModel
    - DataInjection
    - Dynamics
    - StateVariable
    - Distribution
    - Parameter
    - CouplingInput
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - Monitor
    - Coupling
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    range: string
    required: true
  label:
    name: label
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: label
    owner: Monitor
    domain_of:
    - ParcellationTerminology
    - Dataset
    - Contact
    - Equation
    - Stimulus
    - Parcellation
    - Matrix
    - Network
    - Dynamics
    - StateVariable
    - Parameter
    - Function
    - RandomStream
    - CostFunction
    - FittingTarget
    - ModelFitting
    - Monitor
    - Coupling
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - DifferentialOperator
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  parameters:
    name: parameters
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: parameters
    owner: Monitor
    domain_of:
    - Equation
    - Stimulus
    - TemporalApplicableEquation
    - ObservationModel
    - Dynamics
    - Distribution
    - Noise
    - CostFunction
    - FittingTarget
    - Integrator
    - Monitor
    - Coupling
    - PDE
    range: Parameter
    multivalued: true
    inlined: false
  acronym:
    name: acronym
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: acronym
    owner: Monitor
    domain_of:
    - ClinicalScale
    - ClinicalScore
    - ObservationModel
    - Function
    - Monitor
    range: string
  description:
    name: description
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: description
    owner: Monitor
    domain_of:
    - ClinicalScore
    - Stimulus
    - Matrix
    - Network
    - ObservationModel
    - Dynamics
    - StateVariable
    - Parameter
    - CouplingInput
    - Function
    - Callable
    - DerivedParameter
    - DerivedVariable
    - RandomStream
    - ModelFitting
    - Monitor
    - RegionMapping
    - SimulationExperiment
    - SimulationStudy
    - TimeSeries
    - SoftwareEnvironment
    - SoftwareRequirement
    - SoftwarePackage
    - NDArray
    - SpatialDomain
    - Mesh
    - SpatialField
    - FieldStateVariable
    - BoundaryCondition
    - PDESolver
    - PDE
    range: string
  equation:
    name: equation
    from_schema: https://w3id.org/tvbo
    rank: 1000
    slot_uri: tvbo:Equation
    alias: equation
    owner: Monitor
    domain_of:
    - Stimulus
    - ObservationModel
    - StateVariable
    - Distribution
    - Parameter
    - Function
    - Case
    - DerivedParameter
    - DerivedVariable
    - Noise
    - CostFunction
    - FittingTarget
    - Monitor
    - DifferentialOperator
    range: Equation
  environment:
    name: environment
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: environment
    owner: Monitor
    domain_of:
    - ObservationModel
    - Monitor
    - SimulationExperiment
    - PDESolver
    range: SoftwareEnvironment
  transformation:
    name: transformation
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: transformation
    owner: Monitor
    domain_of:
    - ObservationModel
    range: Function
  pipeline:
    name: pipeline
    description: Ordered sequence of processing functions
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: pipeline
    owner: Monitor
    domain_of:
    - ObservationModel
    range: ProcessingStep
    multivalued: true
    inlined: true
    inlined_as_list: true
  data_injections:
    name: data_injections
    description: External data added to the pipeline (e.g., timepoints, kernels)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: data_injections
    owner: Monitor
    domain_of:
    - ObservationModel
    range: DataInjection
    multivalued: true
  argument_mappings:
    name: argument_mappings
    description: How inputs/outputs connect between pipeline steps
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: argument_mappings
    owner: Monitor
    domain_of:
    - ObservationModel
    range: ArgumentMapping
    multivalued: true
  derivatives:
    name: derivatives
    description: Side computations (e.g., functional connectivity)
    from_schema: https://w3id.org/tvbo
    rank: 1000
    alias: derivatives
    owner: Monitor
    domain_of:
    - ObservationModel
    range: DerivedVariable
    multivalued: true
class_uri: tvbo:Monitor