computation_utils
utils.computation_utils
This module contains utility functions used for computations for TVB Simulations, simulation results, simulation components, etc.
Functions
| Name | Description |
|---|---|
| average_rois | Compute the mean value across regions of interest in given data. |
| euclidean_distance_matrix | Calculate the pairwise Euclidean distance matrix. |
average_rois
utils.computation_utils.average_rois(data)Compute the mean value across regions of interest in given data.
Parameters: - data: Data from regions of interest.
Returns
| Name | Type | Description |
|---|---|---|
| np.ndarray | Averaged values for regions of interest (mean along axis=2). |
euclidean_distance_matrix
utils.computation_utils.euclidean_distance_matrix(coords)Calculate the pairwise Euclidean distance matrix.
Parameters
| Name | Type | Description | Default |
|---|---|---|---|
| coords | np.ndarray | Array of shape (n, d) with n points in d-dimensional space. | required |
Returns
| Name | Type | Description |
|---|---|---|
| np.ndarray | A (n, n) ndarray of pairwise Euclidean distances. |