@prefix : . @prefix owl: . @prefix rdf: . @prefix xml: . @prefix xsd: . @prefix rdfs: . @base . rdf:type owl:Ontology ; owl:versionIRI ; "The Virtual Brain Ontology contributors" ; "2024-01-01"^^xsd:date ; "Metadata schema for simulation studies using The Virtual Brain neuroinformatics platform or other dynamic network models of large-scale brain activity." ; ; "2026-04-30"^^xsd:date ; ; "The Virtual Brain Data Model" ; "0.4.0" ; rdfs:label "tvb-datamodel" ; rdfs:seeAlso , ; owl:versionInfo "0.4.0" . ################################################################# # Annotation properties ################################################################# ### http://purl.org/dc/terms/contributor rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/created rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/creator rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/description rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/issued rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/license rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/modified rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/publisher rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/references rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/subject rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/title rdf:type owl:AnnotationProperty . ### http://purl.org/pav/version rdf:type owl:AnnotationProperty . ### http://schema.org/author rdf:type owl:AnnotationProperty . ### http://schema.org/codeRepository rdf:type owl:AnnotationProperty . ### http://schema.org/defaultValue rdf:type owl:AnnotationProperty . ### http://schema.org/identifier rdf:type owl:AnnotationProperty . ### http://schema.org/isPartOf rdf:type owl:AnnotationProperty . ### http://schema.org/issueNumber rdf:type owl:AnnotationProperty . ### http://schema.org/pagination rdf:type owl:AnnotationProperty . ### http://schema.org/publisher rdf:type owl:AnnotationProperty . ### http://schema.org/url rdf:type owl:AnnotationProperty . ### http://schema.org/volumeNumber rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#hasDbXref rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#altLabel rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#broadMatch rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#definition rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#exactMatch rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#inScheme rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#notation rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#note rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#prefLabel rdf:type owl:AnnotationProperty . ### https://w3id.org/linkml/permissible_values rdf:type owl:AnnotationProperty . ### https://w3id.org/tvbo/anatomicalAxesOrientation rdf:type owl:AnnotationProperty . ### https://w3id.org/tvbo/axesOrigin rdf:type owl:AnnotationProperty . ### https://w3id.org/tvbo/hasDerivedVariable rdf:type owl:AnnotationProperty . ### https://w3id.org/tvbo/hasParameter rdf:type owl:AnnotationProperty . ### https://w3id.org/tvbo/hasStateVariable rdf:type owl:AnnotationProperty . ### https://w3id.org/tvbo/lhs rdf:type owl:AnnotationProperty . ### https://w3id.org/tvbo/model_type rdf:type owl:AnnotationProperty ; rdfs:label "model_type (slot)" ; "Coarse classification of this model (mean_field, neural_mass, phase_oscillator, phenomenological, spiking, generic, field). Used for filtering in Dynamics.list_db(model_type=...)." ; ; "model_type" . ### https://w3id.org/tvbo/rhs rdf:type owl:AnnotationProperty . ### https://w3id.org/tvbo/unit rdf:type owl:AnnotationProperty ; rdfs:range . ################################################################# # Datatypes ################################################################# ### http://www.w3.org/2001/XMLSchema#date xsd:date rdf:type rdfs:Datatype . ################################################################# # Object Properties ################################################################# ### http://uri.interlex.org/tgbugs/uris/readable/center rdf:type owl:ObjectProperty ; rdfs:label "center" ; "Add the center coordinate of this entity." ; . ### http://uri.interlex.org/tgbugs/uris/readable/coordinateSpace rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "coordinateSpace" ; "Common coordinate space (e.g. FSLMNI152, MNI152NLin2009cAsym). Reference by name; the CommonCoordinateSpace must be defined in tvbo/database/coordinate_spaces/ (or future equivalent location)." ; . ### http://uri.interlex.org/tgbugs/uris/readable/entities rdf:type owl:ObjectProperty ; rdfs:label "entities" ; . ### http://uri.interlex.org/tgbugs/uris/readable/hasParent rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "hasParent" ; "Add all anatomical parent structures for this entity as defined within the corresponding brain atlas." ; . ### http://uri.interlex.org/tgbugs/uris/readable/hemisphere rdf:type owl:ObjectProperty ; rdfs:label "hemisphere" ; "Add the hemisphere of this entity." ; . ### http://uri.interlex.org/tgbugs/uris/readable/terminology rdf:type owl:ObjectProperty ; rdfs:label "terminology" ; "Add the parcellation terminology version used for this brain atlas version." ; . ### https://w3id.org/tvbo/additional_equations rdf:type owl:ObjectProperty ; rdfs:label "additional_equations (slot)" ; ; "additional_equations" . ### https://w3id.org/tvbo/affect rdf:type owl:ObjectProperty ; rdfs:label "affect (slot)" ; "Affect function: what happens when the event triggers. Can modify state variables and/or parameters. For stimulus type, this is the stimulus equation." ; ; "affect" . ### https://w3id.org/tvbo/affect_negative rdf:type owl:ObjectProperty ; rdfs:label "affect_negative (slot)" ; "Affect on downcrossing (continuous events only). If not specified, uses the same affect for both crossings." ; ; "affect_negative" . ### https://w3id.org/tvbo/affect_parameters rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/affect_states rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/aggregate rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/aggregation rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/algorithm rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/algorithms rdf:type owl:ObjectProperty ; rdfs:label "algorithms (slot)" ; "Iterative parameter tuning algorithms (FIC, EIB, etc.)" ; ; "algorithms" . ### https://w3id.org/tvbo/apply_on_dimension rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/arguments rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/atlas rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/axis rdf:type owl:ObjectProperty ; rdfs:label "axis (slot)" ; "Dimension along which the distribution is sampled. 'space' = per-node (default), 'time' = per-timestep (stochastic input)." ; ; "axis" . ### https://w3id.org/tvbo/bc_type rdf:type owl:ObjectProperty ; rdfs:label "bc_type (slot)" ; ; "bc_type" . ### https://w3id.org/tvbo/bids rdf:type owl:ObjectProperty ; rdfs:label "bids (slot)" ; "BIDS filename entities for this dataset" ; ; "bids" . ### https://w3id.org/tvbo/bifurcationParameter rdf:type owl:ObjectProperty ; rdfs:domain ; rdfs:comment "Parameter (CURIE into the per-model parameter namespace) along which the bifurcation is observed."@en ; rdfs:label "bifurcation parameter"@en . ### https://w3id.org/tvbo/bifurcationType rdf:type owl:ObjectProperty ; rdfs:domain ; rdfs:comment "Object is a Bifurcation class (e.g. tvbo:Hopf). Encoded as a class so DL reasoners can use the subClassOf hierarchy on the Bifurcation tree."@en ; rdfs:label "bifurcation type"@en . ### https://w3id.org/tvbo/boundaries rdf:type owl:ObjectProperty ; rdfs:label "boundaries (slot)" ; ; "boundaries" . ### https://w3id.org/tvbo/boundary_conditions rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/bounds rdf:type owl:ObjectProperty ; rdfs:label "bounds (slot)" ; "Constraints on parameter values after update" ; ; "bounds" . ### https://w3id.org/tvbo/branches rdf:type owl:ObjectProperty ; rdfs:label "branches (slot)" ; "Child branches to continue from detected bifurcation points (PO from Hopf, fold continuation, etc.)." ; ; "branches" . ### https://w3id.org/tvbo/call_args rdf:type owl:ObjectProperty ; rdfs:label "call_args (slot)" ; "Arguments passed when calling the instance (__call__). Usually the input data from simulation result. Example: result (simulation output array)." ; ; "call_args" . ### https://w3id.org/tvbo/callable rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/cases rdf:type owl:ObjectProperty ; rdfs:label "cases (slot)" ; ; "cases" . ### https://w3id.org/tvbo/class_call rdf:type owl:ObjectProperty ; rdfs:label "class_call (slot)" ; "Class instantiation and call (alternative to callable/function). Use for external library classes that need __init__ then __call__. Example: Bold monitor from tvboptim." ; ; "class_call" . ### https://w3id.org/tvbo/class_reference rdf:type owl:ObjectProperty ; rdfs:label "class_reference (slot)" ; "Direct class reference (alternative to pipeline). Use for external library classes like tvboptim.Bold, custom monitors, or any callable class. The class is instantiated with constructor_args and called with call_args. Example: {name: Bold, module: tvboptim.observations.tvb_monitors.bold, constructor_args: [{name: period, value: 1000.0}]}" ; ; "class_reference" . ### https://w3id.org/tvbo/coefficient rdf:type owl:ObjectProperty ; rdfs:label "coefficient (slot)" ; ; "coefficient" . ### https://w3id.org/tvbo/condition rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/condition_parameters rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/condition_states rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/conditionals rdf:type owl:ObjectProperty ; rdfs:label "conditionals (slot)" ; "Conditional logic for piecewise equations." ; ; "conditionals" . ### https://w3id.org/tvbo/connectivity rdf:type owl:ObjectProperty ; rdfs:label "connectivity (slot)" ; ; "connectivity" . ### https://w3id.org/tvbo/constructor_args rdf:type owl:ObjectProperty ; rdfs:label "constructor_args (slot)" ; "Arguments passed to __init__ when instantiating the class. Example: period=1000.0, downsample_period=4.0 for Bold monitor." ; ; "constructor_args" . ### https://w3id.org/tvbo/continuation rdf:type owl:ObjectProperty ; rdfs:label "continuation (slot)" ; "Override solver settings for this branch. Uses the same Continuation type — only explicitly set attributes override the parent's values." ; ; "continuation" . ### https://w3id.org/tvbo/continuations rdf:type owl:ObjectProperty ; rdfs:label "continuations (slot)" ; "Numerical continuation and bifurcation analysis specifications. Each entry defines a continuation experiment (equilibrium branch, codim-2 curve, periodic orbit family, etc.). # Either reference a full reusable environment (preferred) or, for" ; ; "continuations" . ### https://w3id.org/tvbo/coordinate_space rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/coordinates rdf:type owl:ObjectProperty ; rdfs:label "coordinates (slot)" ; "Node coordinates (x,y,z) in the given coordinate space." ; ; "coordinates" . ### https://w3id.org/tvbo/correlation rdf:type owl:ObjectProperty ; rdfs:label "correlation (slot)" ; ; "correlation" . ### https://w3id.org/tvbo/coupling rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/coupling_function rdf:type owl:ObjectProperty ; rdfs:label "coupling_function (slot)" ; "Mathematical function defining the coupling" ; ; "coupling_function" . ### https://w3id.org/tvbo/coupling_inputs rdf:type owl:ObjectProperty ; rdfs:label "coupling_inputs (slot)" ; ; "coupling_inputs" . ### https://w3id.org/tvbo/coupling_terms rdf:type owl:ObjectProperty ; rdfs:label "coupling_terms (slot)" ; ; "coupling_terms" . ### https://w3id.org/tvbo/data rdf:type owl:ObjectProperty ; rdfs:label "data (slot)" ; ; "data" . ### https://w3id.org/tvbo/data_source rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/dataset rdf:type owl:ObjectProperty ; rdfs:label "dataset (slot)" ; "Multi-subject dataset for workflow rendering. When set, render_workflow() uses dataset.subjects/sessions to generate per-subject parallel jobs." ; ; "dataset" . ### https://w3id.org/tvbo/depends_on rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/derived_from_model rdf:type owl:ObjectProperty ; rdfs:label "derived_from_model (slot)" ; ; "derived_from_model" . ### https://w3id.org/tvbo/derived_observations rdf:type owl:ObjectProperty ; rdfs:label "derived_observations (slot)" ; "Observations derived from combining other observations. Computed after all regular observations are available. Examples: fc_corr (from fc, fc_target), rmse, etc." ; ; "derived_observations" . ### https://w3id.org/tvbo/derived_parameters rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/derived_variables rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/description rdf:type owl:ObjectProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/discretization rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/distance_unit rdf:type owl:ObjectProperty ; rdfs:label "distance_unit (slot)" ; "Unit for distances/lengths in the network" ; ; "distance_unit" . ### https://w3id.org/tvbo/distribution rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/domain rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "domain (slot)" ; ; "domain" . ### https://w3id.org/tvbo/dynamics rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/edge_matrix_files rdf:type owl:ObjectProperty ; rdfs:label "edge_matrix_files (slot)" ; ; "edge_matrix_files" . ### https://w3id.org/tvbo/edges rdf:type owl:ObjectProperty ; rdfs:label "edges (slot)" ; "List of directed edges with coupling references (optional, for explicit edge definition)" ; ; "edges" . ### https://w3id.org/tvbo/element_domains rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/element_type rdf:type owl:ObjectProperty ; rdfs:label "element_type (slot)" ; ; "element_type" . ### https://w3id.org/tvbo/engine rdf:type owl:ObjectProperty ; rdfs:label "engine (slot)" ; "Primary engine (must appear in environment.requirements; migration target replacing deprecated 'software')." ; ; "engine" . ### https://w3id.org/tvbo/environment rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "environment (slot)" ; "Execution environment (collection of requirements)." ; ; "environment" . ### https://w3id.org/tvbo/equation rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "equation (slot)" ; ; "equation" . ### https://w3id.org/tvbo/event_type rdf:type owl:ObjectProperty ; rdfs:label "event_type (slot)" ; "Type of event trigger mechanism." ; ; "event_type" . ### https://w3id.org/tvbo/events rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/executableOn rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "executable on"@en . ### https://w3id.org/tvbo/execution rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/exhibitsBifurcation rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:comment "Range is a reified BifurcationEvent that records the bifurcation type, the locus parameter, and (optionally) the critical value."@en ; rdfs:label "exhibits bifurcation"@en . ### https://w3id.org/tvbo/exhibitsRegime rdf:type owl:ObjectProperty ; rdfs:comment "Object is a Regime class (open-world: model may admit additional regimes for parameter values not yet catalogued)."@en ; rdfs:label "exhibits regime"@en . ### https://w3id.org/tvbo/explorations rdf:type owl:ObjectProperty ; rdfs:label "explorations (slot)" ; "Parameter exploration/grid search specifications" ; ; "explorations" . ### https://w3id.org/tvbo/expression rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/field rdf:type owl:ObjectProperty ; rdfs:label "field (slot)" ; "Primary field being solved for (deprecated; use state_variables)." ; ; "field" . ### https://w3id.org/tvbo/field_dynamics rdf:type owl:ObjectProperty ; rdfs:label "field_dynamics (slot)" ; ; "field_dynamics" . ### https://w3id.org/tvbo/format rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/free_parameters rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/freeze_parameters rdf:type owl:ObjectProperty ; rdfs:label "freeze_parameters (slot)" ; "Parameters from previous stages to freeze (keep at optimized value but not update)" ; ; "freeze_parameters" . ### https://w3id.org/tvbo/function rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/functions rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/graph_generator rdf:type owl:ObjectProperty ; rdfs:label "graph_generator (slot)" ; """Graph generator specification. When set, overrides explicit edges/nodes for graph construction. The type field is a free string; StandardGraphType lists well-known types that get automatic code generation across backends. """ ; ; "graph_generator" . ### https://w3id.org/tvbo/hasAttractor rdf:type owl:ObjectProperty ; rdfs:label "has attractor"@en . ### https://w3id.org/tvbo/hasModelFeature rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "has model feature"@en . ### https://w3id.org/tvbo/hasStochasticityCharacter rdf:type owl:ObjectProperty , owl:FunctionalProperty ; rdfs:comment "Intrinsic stochasticity of the model definition itself. A model whose equations are deterministic but is integrated with additive noise via the Integrator is still tvbo:Deterministic here."@en ; rdfs:label "has stochasticity character"@en . ### https://w3id.org/tvbo/hi rdf:type owl:ObjectProperty ; rdfs:label "hi (slot)" ; "Upper bound or stopping value. Can be a number or argument name." ; ; "hi" . ### https://w3id.org/tvbo/history rdf:type owl:ObjectProperty ; rdfs:label "history (slot)" ; ; "history" . ### https://w3id.org/tvbo/hyperparameters rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/imaging_modality rdf:type owl:ObjectProperty ; rdfs:label "imaging_modality (slot)" ; "Type of imaging modality (BOLD, EEG, MEG, etc.)" ; ; "imaging_modality" . ### https://w3id.org/tvbo/includes rdf:type owl:ObjectProperty ; rdfs:label "includes (slot)" ; "Include update rules from other algorithms with optional argument overrides. Unlike depends_on (sequential), includes means combined execution. Example: includes: [{algorithm: fic, arguments: [{name: eta, value: 0.1}]}]" ; ; "includes" . ### https://w3id.org/tvbo/incoming_states rdf:type owl:ObjectProperty ; rdfs:label "incoming_states (slot)" ; "References to state variables from connected (source) nodes. Auto-populated from state_variables with coupling_variable=true when omitted. Used by name in pre_expression." ; ; "incoming_states" . ### https://w3id.org/tvbo/initial_expression rdf:type owl:ObjectProperty ; rdfs:label "initial_expression (slot)" ; "Analytic initial condition for the field." ; ; "initial_expression" . ### https://w3id.org/tvbo/initial_state rdf:type owl:ObjectProperty ; rdfs:label "initial_state (slot)" ; "How to obtain the initial equilibrium. Default: time integration to steady state." ; ; "initial_state" . ### https://w3id.org/tvbo/initial_value rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/inner_coupling rdf:type owl:ObjectProperty ; rdfs:label "inner_coupling (slot)" ; "For hierarchical coupling: inner coupling applied at regional level" ; ; "inner_coupling" . ### https://w3id.org/tvbo/input rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/integration rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/intensity rdf:type owl:ObjectProperty ; rdfs:label "intensity (slot)" ; "Optional scalar or vector intensity parameter for noise." ; ; "intensity" . ### https://w3id.org/tvbo/intermediate_expressions rdf:type owl:ObjectProperty ; rdfs:label "intermediate_expressions (slot)" ; ; "intermediate_expressions" . ### https://w3id.org/tvbo/label rdf:type owl:ObjectProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/linear_solver rdf:type owl:ObjectProperty ; rdfs:label "linear_solver (slot)" ; "Linear solver for the Newton bordered system. E.g. COPBLS (collocation), MatrixBLS (shooting/poincaré)." ; ; "linear_solver" . ### https://w3id.org/tvbo/lo rdf:type owl:ObjectProperty ; rdfs:label "lo (slot)" ; "Lower bound or starting value. Can be a number or argument name." ; ; "lo" . ### https://w3id.org/tvbo/loader rdf:type owl:ObjectProperty ; rdfs:label "loader (slot)" ; "Callable that loads the data (e.g., load_functional_connectivity)" ; ; "loader" . ### https://w3id.org/tvbo/local_coupling_term rdf:type owl:ObjectProperty ; rdfs:label "local_coupling_term (slot)" ; ; "local_coupling_term" . ### https://w3id.org/tvbo/local_states rdf:type owl:ObjectProperty ; rdfs:label "local_states (slot)" ; "References to state variables from the local (target) node. Used by name in pre_expression." ; ; "local_states" . ### https://w3id.org/tvbo/loss rdf:type owl:ObjectProperty ; rdfs:label "loss (slot)" ; "Loss function call. Uses FunctionCall to either: 1. Reference existing function: function: rmse 2. Inline callable: callable: {module: ..., name: ...} Arguments specify inputs (simulated_fc, empirical_fc, etc.)" ; ; "loss" . ### https://w3id.org/tvbo/mesh rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/method rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/metric rdf:type owl:ObjectProperty ; rdfs:label "metric (slot)" ; "Metric equation for matching (e.g., correlation, rmse)" ; ; "metric" . ### https://w3id.org/tvbo/modality rdf:type owl:ObjectProperty ; rdfs:label "modality (slot)" ; "Imaging modality or simulation output type." ; ; "modality" . ### https://w3id.org/tvbo/model rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "model (slot)" ; ; "model" . ### https://w3id.org/tvbo/modelsAnatomicalRegion rdf:type owl:ObjectProperty ; rdfs:comment "Anatomical region(s) the Dynamics model is intended to represent. Range: UBERON terms."@en ; rdfs:label "models anatomical region"@en . ### https://w3id.org/tvbo/modelsCellType rdf:type owl:ObjectProperty ; rdfs:comment "Cell type(s) whose collective dynamics the model represents. Range: CL terms."@en ; rdfs:label "models cell type"@en . ### https://w3id.org/tvbo/modelsNeurotransmitterSystem rdf:type owl:ObjectProperty ; rdfs:comment "Neurotransmitter system(s) whose synaptic dynamics the model represents. Range: GO biological-process terms."@en ; rdfs:label "models neurotransmitter system"@en . ### https://w3id.org/tvbo/modes rdf:type owl:ObjectProperty ; rdfs:label "modes (slot)" ; "components" ; ; "modes" . ### https://w3id.org/tvbo/module rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/name rdf:type owl:ObjectProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/network rdf:type owl:ObjectProperty ; rdfs:label "network (slot)" ; ; "network" . ### https://w3id.org/tvbo/nodes rdf:type owl:ObjectProperty ; rdfs:label "nodes (slot)" ; "List of nodes with individual dynamics (optional, for heterogeneous networks)" ; ; "nodes" . ### https://w3id.org/tvbo/noise rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/objective rdf:type owl:ObjectProperty ; rdfs:label "objective (slot)" ; "What the algorithm optimizes for" ; ; "objective" . ### https://w3id.org/tvbo/observable rdf:type owl:ObjectProperty ; rdfs:label "observable (slot)" ; "Observable to compute at each point. Use function: obs_name for simple observation, or function: func_name + arguments for FunctionCall." ; ; "observable" . ### https://w3id.org/tvbo/observations rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/observed rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/ode_solver rdf:type owl:ObjectProperty ; rdfs:label "ode_solver (slot)" ; "ODE solver for flow-based methods (shooting, poincaré). Specifies algorithm (e.g. Vern9, Rodas5) and tolerances. Not needed for collocation or trapezoid." ; ; "ode_solver" . ### https://w3id.org/tvbo/operator_type rdf:type owl:ObjectProperty ; rdfs:label "operator_type (slot)" ; ; "operator_type" . ### https://w3id.org/tvbo/operators rdf:type owl:ObjectProperty ; rdfs:label "operators (slot)" ; ; "operators" . ### https://w3id.org/tvbo/optimizations rdf:type owl:ObjectProperty ; rdfs:label "optimizations (slot)" ; "Parameter optimization configurations" ; ; "optimizations" . ### https://w3id.org/tvbo/options rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/output_equation rdf:type owl:ObjectProperty ; rdfs:label "output_equation (slot)" ; "Output transformation equation (if equation-based)" ; ; "output_equation" . ### https://w3id.org/tvbo/outsym rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/over rdf:type owl:ObjectProperty ; rdfs:label "over (slot)" ; "Dimension to aggregate over (e.g., node, time, state)" ; ; "over" . ### https://w3id.org/tvbo/parameter rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/parameters rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "parameters (slot)" ; ; "parameters" . ### https://w3id.org/tvbo/parcellation rdf:type owl:ObjectProperty ; rdfs:label "parcellation (slot)" ; "Brain parcellation/atlas reference" ; ; "parcellation" . ### https://w3id.org/tvbo/pipeline rdf:type owl:ObjectProperty ; rdfs:label "pipeline (slot)" ; "Ordered sequence of Functions. Each step has a unique `name` (used to key step outputs) and transforms input -> output. List form preserves execution order." ; ; "pipeline" . ### https://w3id.org/tvbo/position rdf:type owl:ObjectProperty ; rdfs:label "position (slot)" ; "Spatial coordinates (x, y, z) of the node" ; ; "position" . ### https://w3id.org/tvbo/post_expression rdf:type owl:ObjectProperty ; rdfs:label "post_expression (slot)" ; "Post-processing expression applied after coupling" ; ; "post_expression" . ### https://w3id.org/tvbo/pre_expression rdf:type owl:ObjectProperty ; rdfs:label "pre_expression (slot)" ; "Pre-processing expression applied before coupling" ; ; "pre_expression" . ### https://w3id.org/tvbo/preprocessing rdf:type owl:ObjectProperty ; rdfs:label "preprocessing (slot)" ; "Optional preprocessing to apply after loading" ; ; "preprocessing" . ### https://w3id.org/tvbo/provenance rdf:type owl:ObjectProperty ; rdfs:label "provenance (slot)" ; "W3C PROV-O aligned provenance" ; ; "provenance" . ### https://w3id.org/tvbo/providesCapability rdf:type owl:ObjectProperty ; rdfs:domain ; rdfs:range ; rdfs:label "provides capability"@en . ### https://w3id.org/tvbo/random_state rdf:type owl:ObjectProperty ; rdfs:label "random_state (slot)" ; ; "random_state" . ### https://w3id.org/tvbo/region_mapping rdf:type owl:ObjectProperty ; rdfs:label "region_mapping (slot)" ; "For hierarchical coupling: vertex-to-region mapping for aggregation" ; ; "region_mapping" . ### https://w3id.org/tvbo/regional_connectivity rdf:type owl:ObjectProperty ; rdfs:label "regional_connectivity (slot)" ; "For hierarchical coupling: region-to-region connectivity with weights and delays" ; ; "regional_connectivity" . ### https://w3id.org/tvbo/requirements rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "requirements (slot)" ; ; "requirements" . ### https://w3id.org/tvbo/requires rdf:type owl:ObjectProperty ; rdfs:label "requires (slot)" ; "Observables required by this update rule" ; ; "requires" . ### https://w3id.org/tvbo/sample rdf:type owl:ObjectProperty ; rdfs:label "sample (slot)" ; ; "sample" . ### https://w3id.org/tvbo/simulation_experiments rdf:type owl:ObjectProperty ; rdfs:label "simulation_experiments (slot)" ; ; "simulation_experiments" ; "experiments" . ### https://w3id.org/tvbo/software rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/software_environment rdf:type owl:ObjectProperty ; rdfs:label "software_environment (slot)" ; "Software environment used to generate this data." ; ; "software_environment" . ### https://w3id.org/tvbo/solver rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/source rdf:type owl:ObjectProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/source_experiment rdf:type owl:ObjectProperty ; rdfs:label "source_experiment (slot)" ; "Reference to the SimulationExperiment that generated this TimeSeries." ; ; "source_experiment" . ### https://w3id.org/tvbo/source_observations rdf:type owl:ObjectProperty ; rdfs:label "source_observations (slot)" ; "One or more observations to derive from. For transformations (e.g., fc from bold), use single source. For comparisons (e.g., fc_corr from fc and fc_target), use multiple sources. Order may matter for asymmetric operations." ; ; "source_observations" . ### https://w3id.org/tvbo/sources rdf:type owl:ObjectProperty ; rdfs:label "sources (slot)" ; ; "sources" . ### https://w3id.org/tvbo/space rdf:type owl:ObjectProperty ; rdfs:label "space (slot)" ; "Ordered list of exploration axes spanning the search space. Each axis references an existing Parameter (by dotted name, e.g. \"ReducedWongWang.w\" or \"FastLinearCoupling.G\") and supplies the Range to sweep. No new Parameter is created here." ; ; "space" . ### https://w3id.org/tvbo/stages rdf:type owl:ObjectProperty ; rdfs:label "stages (slot)" ; "Ordered list of optimization stages. Stages run sequentially. Stage n+1 starts from optimized values of stage n. When defined, inherited single-stage fields are ignored." ; ; "stages" . ### https://w3id.org/tvbo/state rdf:type owl:ObjectProperty ; rdfs:label "state (slot)" ; "Per-node initial state variable values, keyed by state variable name." ; ; "state" . ### https://w3id.org/tvbo/state_variables rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/step rdf:type owl:ObjectProperty ; rdfs:label "step (slot)" ; "Step size. Can be: number, argument name, or expression." ; ; "step" . ### https://w3id.org/tvbo/stimulation rdf:type owl:ObjectProperty ; rdfs:label "stimulation (slot)" ; ; "stimulation" . ### https://w3id.org/tvbo/stimulus rdf:type owl:ObjectProperty ; rdfs:label "stimulus (slot)" ; ; "stimulus" . ### https://w3id.org/tvbo/supportsTask rdf:type owl:ObjectProperty ; rdfs:domain ; rdfs:range ; rdfs:label "supports task"@en . ### https://w3id.org/tvbo/symmetry rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/system_type rdf:type owl:ObjectProperty ; rdfs:label "system_type (slot)" ; ; "system_type" . ### https://w3id.org/tvbo/target_component rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/target_data rdf:type owl:ObjectProperty ; rdfs:label "target_data (slot)" ; "Reference to empirical data observation for matching objectives" ; ; "target_data" . ### https://w3id.org/tvbo/target_parameter rdf:type owl:ObjectProperty ; rdfs:label "target_parameter (slot)" ; "The parameter to update (e.g., J_i, wLRE)" ; ; "target_parameter" . ### https://w3id.org/tvbo/target_variable rdf:type owl:ObjectProperty ; rdfs:label "target_variable (slot)" ; "State variable for activity targets (e.g., S_e)" ; ; "target_variable" . ### https://w3id.org/tvbo/targets rdf:type owl:ObjectProperty ; rdfs:label "targets (slot)" ; "State variables this noise applies to; if omitted, applies globally." ; ; "targets" . ### https://w3id.org/tvbo/tensor_coefficient rdf:type owl:ObjectProperty ; rdfs:label "tensor_coefficient (slot)" ; "Optional anisotropic tensor (e.g., diffusion)." ; ; "tensor_coefficient" . ### https://w3id.org/tvbo/time rdf:type owl:ObjectProperty ; rdfs:label "time (slot)" ; ; "time" . ### https://w3id.org/tvbo/time_range rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/time_scale rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "time_scale (slot)" ; "Time unit for the integration / simulation. Determines the physical time meaning of one model time-step." ; ; "time_scale" . ### https://w3id.org/tvbo/time_unit rdf:type owl:ObjectProperty ; rdfs:label "time_unit (slot)" ; "Default time unit for the network" ; ; "time_unit" . ### https://w3id.org/tvbo/tractogram rdf:type owl:ObjectProperty ; rdfs:label "tractogram (slot)" ; "Reference to tractography data" ; ; "tractogram" . ### https://w3id.org/tvbo/transforms rdf:type owl:ObjectProperty ; rdfs:label "transforms (slot)" ; "Ordered list of transforms applied to edge property matrices. Each Function's name identifies the target edge property (e.g. 'weight', 'length'). Supports equation-based (symbolic) or callable-based (software) transforms. Multiple transforms on the same target are applied sequentially." ; ; "transforms" . ### https://w3id.org/tvbo/type rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/update_expression rdf:type owl:ObjectProperty ; rdfs:label "update_expression (slot)" ; ; "update_expression" . ### https://w3id.org/tvbo/update_rules rdf:type owl:ObjectProperty ; rdfs:label "update_rules (slot)" ; "How parameters are updated each iteration. When using 'includes', update_rules are inherited from included algorithms." ; ; "update_rules" . ### https://w3id.org/tvbo/value rdf:type owl:ObjectProperty ; rdfs:range . ### https://w3id.org/tvbo/values rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/warmup_from rdf:type owl:ObjectProperty ; rdfs:label "warmup_from (slot)" ; "Previous stage to initialize from. Final values from that stage become initial values for this stage." ; ; "warmup_from" . ### https://w3id.org/tvbo/x rdf:type owl:ObjectProperty ; rdfs:label "x (slot)" ; ; "x" . ### https://w3id.org/tvbo/y rdf:type owl:ObjectProperty ; rdfs:label "y (slot)" ; ; "y" . ### https://w3id.org/tvbo/dbs/amplitude rdf:type owl:ObjectProperty ; rdfs:label "amplitude (dbs)" ; ; "amplitude" . ### https://w3id.org/tvbo/dbs/clinical_improvement rdf:type owl:ObjectProperty ; rdfs:label "clinical_improvement (dbs)" ; "Observed improvement relative to baseline based on a defined score." ; ; "clinical_improvement" . ### https://w3id.org/tvbo/dbs/clinical_scores rdf:type owl:ObjectProperty ; rdfs:label "clinical_scores (dbs)" ; ; "clinical_scores" . ### https://w3id.org/tvbo/dbs/contacts rdf:type owl:ObjectProperty ; rdfs:label "contacts (dbs)" ; "List of physical contacts along the electrode" ; ; "contacts" . ### https://w3id.org/tvbo/dbs/coordinate rdf:type owl:ObjectProperty ; rdfs:label "coordinate (dbs)" ; "3D coordinate of the contact center in the defined coordinate space" ; ; "coordinate" . ### https://w3id.org/tvbo/dbs/coordinate_space rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/dbs/efield rdf:type owl:ObjectProperty ; rdfs:label "efield (dbs)" ; "Metadata about the E-field result for this setting" ; ; "efield" . ### https://w3id.org/tvbo/dbs/electrode_reference rdf:type owl:ObjectProperty ; rdfs:label "electrode_reference (dbs)" ; ; "electrode_reference" . ### https://w3id.org/tvbo/dbs/electrodes rdf:type owl:ObjectProperty ; rdfs:label "electrodes (dbs)" ; ; "electrodes" . ### https://w3id.org/tvbo/dbs/frequency rdf:type owl:ObjectProperty ; rdfs:label "frequency (dbs)" ; ; "frequency" . ### https://w3id.org/tvbo/dbs/head rdf:type owl:ObjectProperty ; rdfs:label "head (dbs)" ; ; "head" . ### https://w3id.org/tvbo/dbs/mode rdf:type owl:ObjectProperty . ### https://w3id.org/tvbo/dbs/parent_score rdf:type owl:ObjectProperty ; rdfs:label "parent_score (dbs)" ; "If this score is a subscore of a broader composite" ; ; "parent_score" . ### https://w3id.org/tvbo/dbs/protocols rdf:type owl:ObjectProperty ; rdfs:label "protocols (dbs)" ; "All DBS protocols assigned to this subject." ; ; "protocols" . ### https://w3id.org/tvbo/dbs/pulse_width rdf:type owl:ObjectProperty ; rdfs:label "pulse_width (dbs)" ; ; "pulse_width" . ### https://w3id.org/tvbo/dbs/scale rdf:type owl:ObjectProperty ; rdfs:label "scale (dbs)" ; "The scale this score belongs to, if applicable" ; ; "scale" . ### https://w3id.org/tvbo/dbs/score rdf:type owl:ObjectProperty ; rdfs:label "score (dbs)" ; ; "score" . ### https://w3id.org/tvbo/dbs/settings rdf:type owl:ObjectProperty ; rdfs:label "settings (dbs)" ; ; "settings" . ### https://w3id.org/tvbo/dbs/tail rdf:type owl:ObjectProperty ; rdfs:label "tail (dbs)" ; ; "tail" . ### https://w3id.org/tvbo/dbs/target_structure rdf:type owl:ObjectProperty ; rdfs:label "target_structure (dbs)" ; "Anatomical target structure from a brain atlas" ; ; "target_structure" . ### https://w3id.org/tvbo/dbs/trajectory rdf:type owl:ObjectProperty ; rdfs:label "trajectory (dbs)" ; "The planned trajectory for electrode implantation" ; ; "trajectory" . ### https://w3id.org/tvbo/software/development_status rdf:type owl:ObjectProperty ; rdfs:label "development_status (software)" ; "Development status (repostatus.org aligned)." ; ; "development_status" . ### https://w3id.org/tvbo/software/ecosystem rdf:type owl:ObjectProperty ; rdfs:label "ecosystem (software)" ; "Package ecosystem(s) through which the software is distributed." ; ; "ecosystem" . ### https://w3id.org/tvbo/software/environment_type rdf:type owl:ObjectProperty ; rdfs:label "environment_type (software)" ; "Category: conda, venv, docker, etc." ; ; "environment_type" . ### https://w3id.org/tvbo/software/interoperates_with rdf:type owl:ObjectProperty ; rdfs:label "interoperates_with (software)" ; "Tools this tool can exchange data with or delegate to." ; ; "interoperates_with" . ### https://w3id.org/tvbo/software/model_paradigm rdf:type owl:ObjectProperty ; rdfs:label "model_paradigm (software)" ; "Computational paradigms supported." ; ; "model_paradigm" . ### https://w3id.org/tvbo/software/package rdf:type owl:ObjectProperty ; rdfs:label "package (software)" ; "Reference to the software package identity." ; ; "package" . ### https://w3id.org/tvbo/software/programming_language rdf:type owl:ObjectProperty ; rdfs:label "programming_language (software)" ; "Implementation languages." ; ; "programming_language" . ### https://w3id.org/tvbo/software/requirements rdf:type owl:ObjectProperty ; rdfs:label "requirements (software)" ; "Constituent software requirements." ; ; "requirements" . ### https://w3id.org/tvbo/software/role rdf:type owl:ObjectProperty ; rdfs:label "role (software)" ; ; "role" . ### https://w3id.org/tvbo/software/scale rdf:type owl:ObjectProperty ; rdfs:label "scale (software)" ; "Spatial/organizational scales the tool operates at." ; ; "scale" . ### https://w3id.org/tvbo/software/tool_role rdf:type owl:ObjectProperty ; rdfs:label "tool_role (software)" ; "Primary function(s) in a simulation workflow." ; ; "tool_role" . ### https://w3id.org/tvbo/study/sessions rdf:type owl:ObjectProperty ; rdfs:label "sessions (study)" ; "Data collection sessions for this subject. Each session can have its own network, empirical data, and conditions." ; ; "sessions" . ### https://w3id.org/tvbo/study/sex rdf:type owl:ObjectProperty ; rdfs:label "sex (study)" ; "Biological sex." ; ; "sex" . ### https://w3id.org/tvbo/study/subjects rdf:type owl:ObjectProperty ; rdfs:range ; rdfs:label "subjects (study)" ; "Subjects in a dataset." ; ; "subjects" . ################################################################# # Data properties ################################################################# ### http://uri.interlex.org/tgbugs/uris/readable/abbreviation rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### http://uri.interlex.org/tgbugs/uris/readable/alternateName rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### http://uri.interlex.org/tgbugs/uris/readable/anatomicalAxesOrientation rdf:type owl:DatatypeProperty . ### http://uri.interlex.org/tgbugs/uris/readable/author rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### http://uri.interlex.org/tgbugs/uris/readable/axesOrigin rdf:type owl:DatatypeProperty . ### http://uri.interlex.org/tgbugs/uris/readable/color rdf:type owl:DatatypeProperty . ### http://uri.interlex.org/tgbugs/uris/readable/dataLocation rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### http://uri.interlex.org/tgbugs/uris/readable/defaultImage rdf:type owl:DatatypeProperty . ### http://uri.interlex.org/tgbugs/uris/readable/digitalIdentifier rdf:type owl:DatatypeProperty ; rdfs:range xsd:string ; rdfs:label "digitalIdentifier" ; "Add the digital identifier of this brain atlas or coordinate space version." ; . ### http://uri.interlex.org/tgbugs/uris/readable/isVersionOf rdf:type owl:DatatypeProperty . ### http://uri.interlex.org/tgbugs/uris/readable/license rdf:type owl:DatatypeProperty . ### http://uri.interlex.org/tgbugs/uris/readable/lookupLabel rdf:type owl:DatatypeProperty ; rdfs:range xsd:integer ; rdfs:label "lookupLabel" ; "Enter the label used for looking up this entity in the parcellation terminology." ; . ### http://uri.interlex.org/tgbugs/uris/readable/nativeUnit rdf:type owl:DatatypeProperty . ### http://uri.interlex.org/tgbugs/uris/readable/ontologyIdentifier rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### http://uri.interlex.org/tgbugs/uris/readable/originalLookupLabel rdf:type owl:DatatypeProperty ; rdfs:label "originalLookupLabel" ; "Add the original label of this entity as defined in the parcellation terminology." ; . ### http://uri.interlex.org/tgbugs/uris/readable/relatedUBERONTerm rdf:type owl:DatatypeProperty . ### http://uri.interlex.org/tgbugs/uris/readable/versionIdentifier rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### http://uri.interlex.org/tgbugs/uris/readable/x rdf:type owl:DatatypeProperty ; rdfs:label "x" ; "X coordinate" ; . ### http://uri.interlex.org/tgbugs/uris/readable/y rdf:type owl:DatatypeProperty ; rdfs:label "y" ; "Y coordinate" ; . ### http://uri.interlex.org/tgbugs/uris/readable/z rdf:type owl:DatatypeProperty ; rdfs:label "z" ; "Z coordinate" ; . ### https://w3id.org/tvbo/abs_tol rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/accelerator rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/acquisition rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/acronym rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/additive rdf:type owl:DatatypeProperty ; rdfs:label "additive (slot)" ; "Indicates whether the noise is additive" ; ; "additive" . ### https://w3id.org/tvbo/affect_parameters rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/affect_states rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/aggregation rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/algorithm rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/apply_every rdf:type owl:DatatypeProperty ; rdfs:label "apply_every (slot)" ; "Apply update every N iterations" ; ; "apply_every" . ### https://w3id.org/tvbo/atlas rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/autonomous rdf:type owl:DatatypeProperty ; rdfs:label "autonomous (slot)" ; "Whether the system is autonomous (equations do not depend explicitly on time t). Non-autonomous systems have explicit time dependence, e.g. f*cos(omega*t)." ; ; "autonomous" . ### https://w3id.org/tvbo/average rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/batch_size rdf:type owl:DatatypeProperty ; rdfs:label "batch_size (slot)" ; "Batch size for vectorized operations (None = auto)" ; ; "batch_size" . ### https://w3id.org/tvbo/bids_dir rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/bothside rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/cohort rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/comment rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/condition rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/condition_parameters rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/condition_states rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/conditional rdf:type owl:DatatypeProperty ; rdfs:label "conditional (slot)" ; ; "conditional" . ### https://w3id.org/tvbo/connectivity_ref rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/correlated rdf:type owl:DatatypeProperty ; rdfs:label "correlated (slot)" ; ; "correlated" . ### https://w3id.org/tvbo/coupling_variable rdf:type owl:DatatypeProperty ; rdfs:label "coupling_variable (slot)" ; "Whether this state variable is transmitted to connected nodes through the coupling function. In TVB terms, this determines the cvar indices (state variables extracted from history and fed into the coupling function). The coupling function may override this via its incoming_states attribute." ; ; "coupling_variable" . ### https://w3id.org/tvbo/criticalValue rdf:type owl:DatatypeProperty , owl:FunctionalProperty ; rdfs:domain ; rdfs:range xsd:double ; rdfs:label "critical value"@en . ### https://w3id.org/tvbo/dataLocation rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/data_file rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/data_source rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dataset_path rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/date_created rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/default rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/definition rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/degree rdf:type owl:DatatypeProperty ; rdfs:label "degree (slot)" ; "Polynomial degree per mesh interval for collocation. The m in PeriodicOrbitOCollProblem(N, m)." ; ; "degree" . ### https://w3id.org/tvbo/delay rdf:type owl:DatatypeProperty ; rdfs:label "delay (slot)" ; "Conduction delay (explicit edges, ms)" ; ; "delay" . ### https://w3id.org/tvbo/delayed rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/delta_p rdf:type owl:DatatypeProperty ; rdfs:label "delta_p (slot)" ; "Initial parameter offset from the bifurcation point." ; ; "delta_p" . ### https://w3id.org/tvbo/derivative_initial_value rdf:type owl:DatatypeProperty ; rdfs:label "derivative_initial_value (slot)" ; "Initial value for the first time derivative, used when equation_order > 1. For a second-order ODE d²x/dt² = f, this sets dx/dt(0). Required by ModelingToolkit.jl to fully specify higher-order initial value problems." ; ; "derivative_initial_value" . ### https://w3id.org/tvbo/derived_from rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/description rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/descriptor rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/detect_bifurcation rdf:type owl:DatatypeProperty ; rdfs:label "detect_bifurcation (slot)" ; "Bifurcation detection level. 0 = off, 1 = eigenvalues only, 2 = detect, 3 = locate precisely." ; ; "detect_bifurcation" . ### https://w3id.org/tvbo/detect_fold rdf:type owl:DatatypeProperty ; rdfs:label "detect_fold (slot)" ; "Enable fold (limit point) detection." ; ; "detect_fold" . ### https://w3id.org/tvbo/dimension rdf:type owl:DatatypeProperty ; rdfs:label "dimension (slot)" ; "Dimensionality of the coupling input (number of coupled values)" ; ; "dimension" . ### https://w3id.org/tvbo/dimension_labels rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/directed rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/distance rdf:type owl:DatatypeProperty ; rdfs:label "distance (slot)" ; "Edge length / tract distance (explicit edges, mm)" ; ; "distance" . ### https://w3id.org/tvbo/distribution rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/doi rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/downsample_period rdf:type owl:DatatypeProperty ; rdfs:label "downsample_period (slot)" ; "Intermediate downsampling period (ms). For BOLD: typically matches dt." ; ; "downsample_period" . ### https://w3id.org/tvbo/ds rdf:type owl:DatatypeProperty ; rdfs:label "ds (slot)" ; "Initial arc-length step size." ; ; "ds" . ### https://w3id.org/tvbo/ds_max rdf:type owl:DatatypeProperty ; rdfs:label "ds_max (slot)" ; "Maximum adaptive step size." ; ; "ds_max" . ### https://w3id.org/tvbo/ds_min rdf:type owl:DatatypeProperty ; rdfs:label "ds_min (slot)" ; "Minimum adaptive step size." ; ; "ds_min" . ### https://w3id.org/tvbo/dt rdf:type owl:DatatypeProperty ; rdfs:label "dt (slot)" ; "Time step (s)." ; ; "dt" . ### https://w3id.org/tvbo/dtype rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/duration rdf:type owl:DatatypeProperty ; rdfs:range xsd:float ; rdfs:label "duration (slot)" ; ; "duration" . ### https://w3id.org/tvbo/element rdf:type owl:DatatypeProperty ; rdfs:label "element (slot)" ; "Element/node index this range applies to. Used in element_domains to explicitly link a domain to a specific element of a heterogeneous parameter (e.g., element: 0 for node 0). Required when used in element_domains to avoid ambiguous positional indexing." ; ; "element" . ### https://w3id.org/tvbo/elements rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/equation_order rdf:type owl:DatatypeProperty ; rdfs:label "equation_order (slot)" ; "Order of the time derivative on the LHS. Default 1 means dx/dt = rhs (first-order ODE). Order 2 means d²x/dt² = rhs (second-order ODE), etc. Higher-order ODEs are automatically lowered to coupled first-order systems by backends like ModelingToolkit.jl via mtkcompile." ; ; "equation_order" . ### https://w3id.org/tvbo/equation_type rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/explored_values rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/expression rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/extension rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/file rdf:type owl:DatatypeProperty ; rdfs:range xsd:string ; rdfs:label "file (slot)" ; ; "file" . ### https://w3id.org/tvbo/find_fixpoint rdf:type owl:DatatypeProperty ; rdfs:label "find_fixpoint (slot)" ; "Whether to find a fixed point (steady state) before time integration. Used as initial condition for ODEProblem. Maps to NLsolve.fixpoint! in ND.jl or similar in other backends." ; ; "find_fixpoint" . ### https://w3id.org/tvbo/format rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/free rdf:type owl:DatatypeProperty ; rdfs:label "free (slot)" ; ; "free" . ### https://w3id.org/tvbo/gaussian rdf:type owl:DatatypeProperty ; rdfs:label "gaussian (slot)" ; "Indicates whether the noise is Gaussian" ; ; "gaussian" . ### https://w3id.org/tvbo/generated_at rdf:type owl:DatatypeProperty ; rdfs:label "generated_at (slot)" ; "Timestamp when this TimeSeries was generated." ; ; "generated_at" . ### https://w3id.org/tvbo/generated_by rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/geometry rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/grounding rdf:type owl:DatatypeProperty ; rdfs:range xsd:anyURI ; rdfs:label "grounding (slot)" ; "External ontology IRIs (typically GO, ChEBI, UBERON, CL, MeSH) that this entity is a surrogate / abstraction / model of. Replaces the legacy OWL pattern `tvbo:surrogate_of` by carrying the link inline with the YAML data instance. Multiple IRIs allowed: a single parameter may abstract several biological processes (e.g. a synaptic conductance grounding both GO:0060079 (excitatory PSP) and GO:0007268 (chemical synaptic transmission))." ; ; "grounding" . ### https://w3id.org/tvbo/groups rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/hasConservedQuantity rdf:type owl:DatatypeProperty ; rdfs:range xsd:boolean ; rdfs:label "has conserved quantity"@en . ### https://w3id.org/tvbo/hasTimescaleSeparation rdf:type owl:DatatypeProperty ; rdfs:range xsd:boolean ; rdfs:label "has timescale separation"@en . ### https://w3id.org/tvbo/has_reference rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/hemi rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/heterogeneous rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/id rdf:type owl:DatatypeProperty ; rdfs:label "id (slot)" ; "Unique node identifier" ; ; "id" . ### https://w3id.org/tvbo/initial_value rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/input rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/iri rdf:type owl:DatatypeProperty ; rdfs:range xsd:anyURI ; rdfs:label "iri (slot)" ; "Optional stable IRI (or compact URI) for this entity in an external ontology or knowledge base. Used to load metadata from an external source; not required when the entity is fully self-contained (equations, parameters, etc. defined in the file itself)." ; ; "iri" . ### https://w3id.org/tvbo/key rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/keys rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/label rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/labels_dimensions rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/labels_ordering rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/latex rdf:type owl:DatatypeProperty ; rdfs:label "latex (slot)" ; ; "latex" . ### https://w3id.org/tvbo/learning_rate rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/learning_rate_schedule rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/learning_rate_warmup rdf:type owl:DatatypeProperty ; rdfs:label "learning_rate_warmup (slot)" ; "Linear warmup of learning rate from 0 to learning_rate over n_iterations. eta_effective = eta * (i+1) / n_iterations" ; ; "learning_rate_warmup" . ### https://w3id.org/tvbo/lefthandside rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/license rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/log_scale rdf:type owl:DatatypeProperty ; rdfs:label "log_scale (slot)" ; "Whether to use logarithmic spacing." ; ; "log_scale" . ### https://w3id.org/tvbo/max_bisection_steps rdf:type owl:DatatypeProperty ; rdfs:label "max_bisection_steps (slot)" ; "Maximum bisection steps for bifurcation point localization." ; ; "max_bisection_steps" . ### https://w3id.org/tvbo/max_iterations rdf:type owl:DatatypeProperty ; rdfs:label "max_iterations (slot)" ; ; "max_iterations" . ### https://w3id.org/tvbo/max_steps rdf:type owl:DatatypeProperty ; rdfs:label "max_steps (slot)" ; "Maximum continuation steps." ; ; "max_steps" . ### https://w3id.org/tvbo/mesh_file rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/mesh_format rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/mesh_intervals rdf:type owl:DatatypeProperty ; rdfs:label "mesh_intervals (slot)" ; "Number of mesh intervals (time slices) for collocation or trapezoid methods. Collocation: N in PeriodicOrbitOCollProblem(N, m). Trapezoid: M in PeriodicOrbitTrapProblem(M=...)." ; ; "mesh_intervals" . ### https://w3id.org/tvbo/method rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/mode rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/model_equation_ref rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/model_param_ref rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/modified rdf:type owl:DatatypeProperty ; rdfs:label "modified (slot)" ; ; "modified" . ### https://w3id.org/tvbo/module rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/n rdf:type owl:DatatypeProperty ; rdfs:label "n (slot)" ; "Number of points (alternative to step for grid exploration)." ; ; "n" . ### https://w3id.org/tvbo/n_inversion rdf:type owl:DatatypeProperty ; rdfs:label "n_inversion (slot)" ; "Number of eigenvalue sign inversions to flag a bifurcation. Must be even. Higher = fewer false positives." ; ; "n_inversion" . ### https://w3id.org/tvbo/n_iterations rdf:type owl:DatatypeProperty ; rdfs:label "n_iterations (slot)" ; "Number of iterations to run" ; ; "n_iterations" . ### https://w3id.org/tvbo/n_parallel rdf:type owl:DatatypeProperty ; rdfs:label "n_parallel (slot)" ; "Parallel evaluations" ; ; "n_parallel" . ### https://w3id.org/tvbo/n_regions rdf:type owl:DatatypeProperty ; rdfs:label "n_regions (slot)" ; "Total number of regions" ; ; "n_regions" . ### https://w3id.org/tvbo/n_sections rdf:type owl:DatatypeProperty ; rdfs:label "n_sections (slot)" ; "Number of shooting sections for shooting or Poincaré methods." ; ; "n_sections" . ### https://w3id.org/tvbo/n_threads rdf:type owl:DatatypeProperty ; rdfs:label "n_threads (slot)" ; "Number of CPU threads per worker (-1 = auto-detect)" ; ; "n_threads" . ### https://w3id.org/tvbo/n_trials rdf:type owl:DatatypeProperty ; rdfs:label "n_trials (slot)" ; "Number of independent trials per grid point. Each trial uses a different noise seed. Used for averaging stochastic simulations (e.g., VEP = average of 20 trials)." ; ; "n_trials" . ### https://w3id.org/tvbo/n_vertices rdf:type owl:DatatypeProperty ; rdfs:label "n_vertices (slot)" ; "Total number of vertices" ; ; "n_vertices" . ### https://w3id.org/tvbo/n_workers rdf:type owl:DatatypeProperty ; rdfs:label "n_workers (slot)" ; "Number of parallel workers (maps to pmap devices in JAX, processes in multiprocessing)" ; ; "n_workers" . ### https://w3id.org/tvbo/name rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/nev rdf:type owl:DatatypeProperty ; rdfs:label "nev (slot)" ; "Number of eigenvalues to compute. Must be >= number of state variables for reliable Hopf detection." ; ; "nev" . ### https://w3id.org/tvbo/newton_max_iterations rdf:type owl:DatatypeProperty ; rdfs:label "newton_max_iterations (slot)" ; "Maximum Newton corrector iterations per step." ; ; "newton_max_iterations" . ### https://w3id.org/tvbo/newton_tol rdf:type owl:DatatypeProperty ; rdfs:label "newton_tol (slot)" ; "Absolute tolerance for Newton corrector convergence." ; ; "newton_tol" . ### https://w3id.org/tvbo/node_mapping rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/noise_type rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/non_negative rdf:type owl:DatatypeProperty ; rdfs:label "non_negative (slot)" ; "All values >= 0" ; ; "non_negative" . ### https://w3id.org/tvbo/number_of_elements rdf:type owl:DatatypeProperty ; rdfs:label "number_of_elements (slot)" ; "Number of elements (triangles, quads, tetrahedra, etc.)." ; ; "number_of_elements" . ### https://w3id.org/tvbo/number_of_modes rdf:type owl:DatatypeProperty ; rdfs:label "number_of_modes (slot)" ; ; "number_of_modes" . ### https://w3id.org/tvbo/number_of_nodes rdf:type owl:DatatypeProperty ; rdfs:label "number_of_nodes (slot)" ; "number_of_nodes" , "number_of_regions" ; "Number of nodes in the network (derived from nodes if not set)" ; ; "number_of_nodes" . ### https://w3id.org/tvbo/number_of_stages rdf:type owl:DatatypeProperty ; rdfs:label "number_of_stages (slot)" ; ; "number_of_stages" . ### https://w3id.org/tvbo/number_of_subjects rdf:type owl:DatatypeProperty ; rdfs:label "number_of_subjects (slot)" ; "Number of subjects in the tractography dataset" ; ; "number_of_subjects" . ### https://w3id.org/tvbo/number_of_vertices rdf:type owl:DatatypeProperty ; rdfs:label "number_of_vertices (slot)" ; "Number of vertices in the mesh." ; ; "number_of_vertices" . ### https://w3id.org/tvbo/observational_measures rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/on_region rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/output rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/outsym rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/parent_network rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/path rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/period rdf:type owl:DatatypeProperty ; rdfs:label "period (slot)" ; "Sampling period for monitors (ms). For BOLD: TR in ms." ; ; "period" . ### https://w3id.org/tvbo/phaseSpaceDimension rdf:type owl:DatatypeProperty , owl:FunctionalProperty ; rdfs:range xsd:positiveInteger ; rdfs:label "phase-space dimension"@en . ### https://w3id.org/tvbo/precision rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/preconditioner rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/processing_pipeline rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/pycode rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/quantity_kind rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/random_seed rdf:type owl:DatatypeProperty ; rdfs:label "random_seed (slot)" ; "Base random seed for reproducibility" ; ; "random_seed" . ### https://w3id.org/tvbo/reconstruction rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/record rdf:type owl:DatatypeProperty ; rdfs:range xsd:boolean ; rdfs:label "record (slot)" ; "Whether to include this element in simulation output files. Applicable to state variables (default true), derived variables (default false), and network nodes (default true). Set false to suppress recording." ; ; "record" . ### https://w3id.org/tvbo/reference rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/references rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/region rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/regions rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/rel_tol rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/reported_optimum rdf:type owl:DatatypeProperty ; rdfs:range xsd:float ; rdfs:label "reported_optimum (slot)" ; ; "reported_optimum" . ### https://w3id.org/tvbo/righthandside rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/run_id rdf:type owl:DatatypeProperty ; rdfs:label "run_id (slot)" ; "BIDS run number." ; ; "run_id" . ### https://w3id.org/tvbo/sampling_period rdf:type owl:DatatypeProperty ; rdfs:label "sampling_period (slot)" ; "Time between samples (inverse of sampling_rate)." ; ; "sampling_period" . ### https://w3id.org/tvbo/sampling_period_unit rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/sampling_rate rdf:type owl:DatatypeProperty ; rdfs:label "sampling_rate (slot)" ; "Sampling rate in Hz." ; ; "sampling_rate" . ### https://w3id.org/tvbo/scale rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/scipy_ode_base rdf:type owl:DatatypeProperty ; rdfs:label "scipy_ode_base (slot)" ; ; "scipy_ode_base" . ### https://w3id.org/tvbo/seed rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/segmentation rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/session_id rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/shape rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/simulation_period rdf:type owl:DatatypeProperty ; rdfs:label "simulation_period (slot)" ; "Duration of each simulation step (e.g., one BOLD TR)" ; ; "simulation_period" . ### https://w3id.org/tvbo/size rdf:type owl:DatatypeProperty ; rdfs:label "size (slot)" ; ; "size" . ### https://w3id.org/tvbo/skip_t rdf:type owl:DatatypeProperty ; rdfs:label "skip_t (slot)" ; "Number of samples to skip at the start (transient removal). For FC: typically 10-20 TRs." ; ; "skip_t" . ### https://w3id.org/tvbo/source rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/source_branch rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/source_code rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/source_point rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/source_var rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/sparse rdf:type owl:DatatypeProperty ; rdfs:label "sparse (slot)" ; "Whether the coupling uses sparse representations" ; ; "sparse" . ### https://w3id.org/tvbo/state_wise_sigma rdf:type owl:DatatypeProperty ; rdfs:label "state_wise_sigma (slot)" ; ; "state_wise_sigma" . ### https://w3id.org/tvbo/step_size rdf:type owl:DatatypeProperty ; rdfs:label "step_size (slot)" ; "dt" ; ; "step_size" . ### https://w3id.org/tvbo/steps rdf:type owl:DatatypeProperty ; rdfs:label "steps (slot)" ; ; "steps" . ### https://w3id.org/tvbo/stimulation_variable rdf:type owl:DatatypeProperty ; rdfs:label "stimulation_variable (slot)" ; ; "stimulation_variable" . ### https://w3id.org/tvbo/structural_measures rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/subject_id rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/symbol rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/symmetry rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/tail_samples rdf:type owl:DatatypeProperty ; rdfs:label "tail_samples (slot)" ; "Number of samples from the end to use. Takes the last N samples before aggregation. E.g., tail_samples: 500 means use data[-500:]." ; ; "tail_samples" . ### https://w3id.org/tvbo/target rdf:type owl:DatatypeProperty ; rdfs:label "target (slot)" ; "Target node ID (set for explicit edges, absent for template edges)" ; ; "target" . ### https://w3id.org/tvbo/target_component rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/target_network rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/target_value rdf:type owl:DatatypeProperty ; rdfs:label "target_value (slot)" ; "Target value for activity objectives" ; ; "target_value" . ### https://w3id.org/tvbo/target_var rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/task_name rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/template rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/time_dependent rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/time_integrator rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/title rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/tol_stability rdf:type owl:DatatypeProperty ; rdfs:label "tol_stability (slot)" ; "Tolerance on real part of eigenvalue for stability boundary." ; ; "tol_stability" . ### https://w3id.org/tvbo/tolerances rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/transient_time rdf:type owl:DatatypeProperty ; rdfs:label "transient_time (slot)" ; ; "transient_time" . ### https://w3id.org/tvbo/trigger_times rdf:type owl:DatatypeProperty ; rdfs:label "trigger_times (slot)" ; "Predetermined trigger times for preset_time events. The solver will step exactly to these times." ; ; "trigger_times" . ### https://w3id.org/tvbo/type rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/unit rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/valid_diagonal rdf:type owl:DatatypeProperty ; rdfs:label "valid_diagonal (slot)" ; "Self-connections are meaningful" ; ; "valid_diagonal" . ### https://w3id.org/tvbo/value rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/values rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/variable_of_interest rdf:type owl:DatatypeProperty ; rdfs:label "variable_of_interest (slot)" ; ; "variable_of_interest" . ### https://w3id.org/tvbo/vertex_to_region rdf:type owl:DatatypeProperty ; rdfs:label "vertex_to_region (slot)" ; "Array mapping each vertex index to its parent region index. Can use dataLocation instead for large arrays." ; ; "vertex_to_region" . ### https://w3id.org/tvbo/voi rdf:type owl:DatatypeProperty ; rdfs:label "voi (slot)" ; "Variable of interest index (which state variable to monitor). Default: 0." ; ; "voi" . ### https://w3id.org/tvbo/warmup rdf:type owl:DatatypeProperty ; rdfs:label "warmup (slot)" ; "Whether to apply learning rate warmup to this update rule. When true, the learning rate (eta) is scaled by (i+1)/n_iterations." ; ; "warmup" . ### https://w3id.org/tvbo/warmup_source rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/weight rdf:type owl:DatatypeProperty ; rdfs:label "weight (slot)" ; "Connection weight (explicit edges)" ; ; "weight" . ### https://w3id.org/tvbo/weighted rdf:type owl:DatatypeProperty ; rdfs:label "weighted (slot)" ; "Matrix entries carry weights (not just 0/1)" ; ; "weighted" . ### https://w3id.org/tvbo/weighting rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/window_size rdf:type owl:DatatypeProperty ; rdfs:label "window_size (slot)" ; "Number of samples for windowed aggregation" ; ; "window_size" . ### https://w3id.org/tvbo/year rdf:type owl:DatatypeProperty ; rdfs:label "year (slot)" ; ; "year" . ### https://w3id.org/tvbo/dbs/absolute_value rdf:type owl:DatatypeProperty ; rdfs:label "absolute_value (dbs)" ; "Absolute value of the score at the time of assessment" ; ; "absolute_value" . ### https://w3id.org/tvbo/dbs/acronym rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/active_contacts rdf:type owl:DatatypeProperty ; rdfs:label "active_contacts (dbs)" ; ; "active_contacts" . ### https://w3id.org/tvbo/dbs/baseline_value rdf:type owl:DatatypeProperty ; rdfs:label "baseline_value (dbs)" ; "Preoperative baseline value of the score" ; ; "baseline_value" . ### https://w3id.org/tvbo/dbs/contact_id rdf:type owl:DatatypeProperty ; rdfs:label "contact_id (dbs)" ; "Identifier (e.g., 0, 1, 2)" ; ; "contact_id" . ### https://w3id.org/tvbo/dbs/description rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/diagnosis rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/domain rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/electrode_id rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/evaluator rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/handedness rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/hemisphere rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/id rdf:type owl:DatatypeProperty ; rdfs:range xsd:integer ; rdfs:label "id (dbs)" ; "Surrogate integer key." ; ; "id" . ### https://w3id.org/tvbo/dbs/label rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/manufacturer rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/mode rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/model rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/name rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/notes rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/percent_change rdf:type owl:DatatypeProperty ; rdfs:label "percent_change (dbs)" ; "Percent change compared to preoperative baseline (positive = improvement)" ; ; "percent_change" . ### https://w3id.org/tvbo/dbs/recon_path rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/reference rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/threshold_applied rdf:type owl:DatatypeProperty ; rdfs:label "threshold_applied (dbs)" ; "Threshold value applied to the E-field simulation" ; ; "threshold_applied" . ### https://w3id.org/tvbo/dbs/time_post_surgery rdf:type owl:DatatypeProperty ; rdfs:label "time_post_surgery (dbs)" ; "Timepoint of assessment in days or months after implantation" ; ; "time_post_surgery" . ### https://w3id.org/tvbo/dbs/timepoint rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/timing_info rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/version rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/dbs/volume_data rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/application_category rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/author rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/build_hash rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/citation rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/container_image rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/dataLocation rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/date_created rdf:type owl:DatatypeProperty ; rdfs:label "date_created (software)" ; "Date the software was first released (YYYY-MM-DD)." ; ; "date_created" . ### https://w3id.org/tvbo/software/date_modified rdf:type owl:DatatypeProperty ; rdfs:label "date_modified (software)" ; "Date of the most recent release or significant update." ; ; "date_modified" . ### https://w3id.org/tvbo/software/description rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/doi rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/funder rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/hash rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/homepage rdf:type owl:DatatypeProperty ; rdfs:label "homepage (software)" ; "Project homepage URL." ; ; "homepage" . ### https://w3id.org/tvbo/software/is_accessible_for_free rdf:type owl:DatatypeProperty ; rdfs:label "is_accessible_for_free (software)" ; "Whether the tool is free/open-source." ; ; "is_accessible_for_free" . ### https://w3id.org/tvbo/software/issue_tracker rdf:type owl:DatatypeProperty ; rdfs:label "issue_tracker (software)" ; "URL of the bug tracker or issue board." ; ; "issue_tracker" . ### https://w3id.org/tvbo/software/keywords rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/label rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/license rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/maintainer rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/modules rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/operating_system rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/optional rdf:type owl:DatatypeProperty ; rdfs:label "optional (software)" ; ; "optional" . ### https://w3id.org/tvbo/software/platform rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/reference_publication rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/repository rdf:type owl:DatatypeProperty ; rdfs:label "repository (software)" ; "Source code repository URL." ; ; "repository" . ### https://w3id.org/tvbo/software/runtime_platform rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/same_as rdf:type owl:DatatypeProperty ; rdfs:label "same_as (software)" ; "URIs that unambiguously identify this tool (Wikidata, bio.tools, RRID, SciCrunch)." ; ; "same_as" . ### https://w3id.org/tvbo/software/source_url rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/url rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/version rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/software/version_spec rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/age rdf:type owl:DatatypeProperty ; rdfs:label "age (study)" ; "Age at time of study (years)." ; ; "age" . ### https://w3id.org/tvbo/study/bids_root rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/condition rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/conditions rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/dataset_id rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/study/description rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/empirical_data rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/group rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/label rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/metadata rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/network rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/reference rdf:type owl:DatatypeProperty . ### https://w3id.org/tvbo/study/session_id rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### https://w3id.org/tvbo/study/subject_id rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ################################################################# # Classes ################################################################# ### http://qudt.org/vocab/unit/A rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "A" ; "Ampere" ; . ### http://qudt.org/vocab/unit/CentiM rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "cm" ; "Centimetre" ; . ### http://qudt.org/vocab/unit/DEG_C rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "degC" ; "Degree Celsius" . ### http://qudt.org/vocab/unit/H-PER-M rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "H_per_m" ; "Henry per metre (permeability)" . ### http://qudt.org/vocab/unit/HZ rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Hz" ; "Hertz (s⁻¹)" ; . ### http://qudt.org/vocab/unit/KiloGM rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "kg" ; "Kilogram" ; . ### http://qudt.org/vocab/unit/KiloHZ rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "kHz" ; "Kilohertz" . ### http://qudt.org/vocab/unit/M rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "m" ; "Metre" ; . ### http://qudt.org/vocab/unit/M-PER-SEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "m_per_s" ; "Metre per second" . ### http://qudt.org/vocab/unit/M-PER-SEC2 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "m_per_s2" ; "Metre per second squared (acceleration)" . ### http://qudt.org/vocab/unit/MOL-PER-M3 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "mol_per_m3" ; "Mole per cubic metre (mol/m³)" . ### http://qudt.org/vocab/unit/MicroM3 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "um3" ; "Cubic micrometre (µm³)" . ### http://qudt.org/vocab/unit/MicroS rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "uS" ; "Microsiemens" . ### http://qudt.org/vocab/unit/MicroSEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "us" ; "Microsecond" ; . ### http://qudt.org/vocab/unit/MilliM rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "mm" ; "Millimetre" ; . ### http://qudt.org/vocab/unit/MilliM-PER-MilliSEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "mm_per_ms" ; "Millimetre per millisecond (= m/s)" . ### http://qudt.org/vocab/unit/MilliMOL-PER-M3 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "mmol_per_m3" ; "mM" ; "Millimole per cubic metre (mmol/m³ ≈ mM)" . ### http://qudt.org/vocab/unit/MilliSEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "ms" ; "Millisecond" ; . ### http://qudt.org/vocab/unit/MilliV rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "mV" ; "Millivolt" ; . ### http://qudt.org/vocab/unit/MilliV-PER-MilliSEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "mV_per_ms" ; "Millivolt per millisecond" . ### http://qudt.org/vocab/unit/MilliV-PER-SEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "mV_per_s" ; "Millivolt per second" . ### http://qudt.org/vocab/unit/N-PER-M rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "N_per_m" ; "Newton per metre (spring constant)" . ### http://qudt.org/vocab/unit/NanoA rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "nA" ; "Nanoampere" . ### http://qudt.org/vocab/unit/NanoFARAD rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "nF" ; "Nanofarad" . ### http://qudt.org/vocab/unit/NanoS rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "nS" ; "Nanosiemens" . ### http://qudt.org/vocab/unit/OHM rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "ohm" ; "Ohm (Ω)" . ### http://qudt.org/vocab/unit/PER-MilliSEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "per_ms" ; "Per millisecond (ms⁻¹)" . ### http://qudt.org/vocab/unit/PER-MilliV rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "per_mV" ; "Reciprocal millivolt (mV⁻¹)" . ### http://qudt.org/vocab/unit/PER-NanoC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "per_nC" ; "Reciprocal nanocoulomb (nC⁻¹)" . ### http://qudt.org/vocab/unit/PER-PicoC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "per_pC" ; "Reciprocal picocoulomb (pC⁻¹)" . ### http://qudt.org/vocab/unit/PER-SEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "per_s" ; "Per second (s⁻¹)" . ### http://qudt.org/vocab/unit/PERCENT rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "percent" ; "Percent (%)" . ### http://qudt.org/vocab/unit/PicoA rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "pA" ; "Picoampere" ; . ### http://qudt.org/vocab/unit/PicoFARAD rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "pF" ; "Picofarad" . ### http://qudt.org/vocab/unit/PicoS rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "pS" ; "Picosiemens" . ### http://qudt.org/vocab/unit/RAD rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "rad" ; "Radian" ; . ### http://qudt.org/vocab/unit/RAD-PER-SEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "rad_per_s" ; "Radian per second (angular velocity)" . ### http://qudt.org/vocab/unit/S-PER-M rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "S_per_m" ; "Siemens per metre (conductivity)" . ### http://qudt.org/vocab/unit/SEC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "s" ; "Second" ; . ### http://qudt.org/vocab/unit/SEC2 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "s2" ; "Second squared (inertia constant)" . ### http://qudt.org/vocab/unit/UNITLESS rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "dimensionless" ; "Dimensionless (unitless)" ; . ### http://qudt.org/vocab/unit/V rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "V" ; "Volt" ; . ### http://schema.org/Book rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:label "Book" . ### http://schema.org/CreativeWork rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:label "Creative work" . ### http://schema.org/Report rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:label "Report" . ### http://schema.org/ScholarlyArticle rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:label "Scholarly article" . ### http://uri.interlex.org/tgbugs/uris/readable/BrainAtlas rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:label "BrainAtlas" ; "A schema for representing a version of a brain atlas." ; ; . ### http://uri.interlex.org/tgbugs/uris/readable/CommonCoordinateSpace rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:label "CommonCoordinateSpace" ; "A schema for representing a version of a common coordinate space." ; ; . ### http://uri.interlex.org/tgbugs/uris/readable/Coordinate rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:label "Coordinate" ; "A 3D coordinate with X, Y, Z values." ; . ### http://uri.interlex.org/tgbugs/uris/readable/ParcellationEntity rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; , ; rdfs:label "ParcellationEntity" ; "A schema for representing a parcellation entity, which is an anatomical location or study target." ; ; . ### http://uri.interlex.org/tgbugs/uris/readable/ParcellationTerminology rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:label "ParcellationTerminology" ; "A schema for representing a parcellation terminology, which consists of parcellation entities." ; ; . ### http://www.w3.org/2001/XMLSchema#string xsd:string rdf:type owl:Class ; rdfs:subClassOf owl:Thing . ### http://www.w3.org/2004/02/skos/core#Concept rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:label "SKOS Concept" . ### http://www.wikidata.org/entity/Q105593788 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "conda_forge" ; "Conda-Forge community channel." . ### http://www.wikidata.org/entity/Q1073340 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "network_system" ; "Whole-brain or large-scale network of regions." . ### http://www.wikidata.org/entity/Q1368960 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "mean_field" ; "Mean-field reductions of spiking networks." . ### http://www.wikidata.org/entity/Q1569346 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "simulator" ; "Core numerical simulator." . ### http://www.wikidata.org/entity/Q15777 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "C" . ### http://www.wikidata.org/entity/Q182017 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "MATLAB" . ### http://www.wikidata.org/entity/Q1948412 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "multiscale" ; "Bridging multiple spatial/temporal scales." . ### http://www.wikidata.org/entity/Q2005 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "JavaScript" . ### http://www.wikidata.org/entity/Q206904 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "R" . ### http://www.wikidata.org/entity/Q2115 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "XML" . ### http://www.wikidata.org/entity/Q2370 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "C#" . ### http://www.wikidata.org/entity/Q2407 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "C++" . ### http://www.wikidata.org/entity/Q251 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Java" . ### http://www.wikidata.org/entity/Q2661442 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "specification_language" ; "Model description language or data standard." . ### http://www.wikidata.org/entity/Q271680 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "framework" ; "Multi-paradigm simulation framework." . ### http://www.wikidata.org/entity/Q28865 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Python" . ### http://www.wikidata.org/entity/Q2984888 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "pypi" ; "Python Package Index." . ### http://www.wikidata.org/entity/Q317623 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "data_standard" ; "Data format or exchange standard." . ### http://www.wikidata.org/entity/Q34010 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Haskell" . ### http://www.wikidata.org/entity/Q3685405 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "rate_based" ; "Firing-rate models." . ### http://www.wikidata.org/entity/Q4010477 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Julia" . ### http://www.wikidata.org/entity/Q43054 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "neuron" ; "Single neuron (compartmental or point)." ; . ### http://www.wikidata.org/entity/Q484761 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "neural_network" ; "Microcircuit / local network of neurons." . ### http://www.wikidata.org/entity/Q5155691 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "compartmental" ; "Multi-compartment morphologically detailed models." . ### http://www.wikidata.org/entity/Q575650 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Rust" . ### http://www.wikidata.org/entity/Q5765633 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "HOC" ; "NEURON's high-level interpreted language." . ### http://www.wikidata.org/entity/Q634884 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "phase_oscillator" ; "Phase-reduced or Kuramoto-type oscillator models." . ### http://www.wikidata.org/entity/Q6795527 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "maven" ; "Maven Central Repository (Java)." . ### http://www.wikidata.org/entity/Q7003015 rdf:type owl:Class ; rdfs:subClassOf , ; rdfs:label "neural_mass" ; "Phenomenological population-rate / neural-mass models." , "Population-level neural mass or mean-field model." . ### http://www.wikidata.org/entity/Q7067518 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "npm" ; "Node Package Manager registry." . ### http://www.wikidata.org/entity/Q72484 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "conductance_based" ; "Conductance-based / Hodgkin-Huxley-type models." . ### http://www.wikidata.org/entity/Q7397 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "model_repository" ; "Database or repository of published models." . ### http://www.wikidata.org/entity/Q747830 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "plasticity" ; "Synaptic plasticity (STDP, homeostatic, etc.)." . ### http://www.wikidata.org/entity/Q7579783 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "spiking" ; "Spiking neuron models (LIF, AdEx, Izhikevich, etc.)." . ### http://www.wikidata.org/entity/Q816286 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "optimization_framework" ; "Parameter optimization / fitting tool." . ### http://www.wikidata.org/entity/Q83303 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Fortran" . ### http://www.wikidata.org/entity/Q851270 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "reaction_diffusion" ; "Stochastic or deterministic reaction-diffusion." . ### http://www.wikidata.org/entity/Q858926 rdf:type owl:Class ; rdfs:subClassOf , ; rdfs:label "bifurcation_analysis" ; "continuation_tool" ; "Dynamical systems bifurcation / continuation analysis." , "Numerical continuation / bifurcation analysis." . ### http://www.wikidata.org/entity/Q898786 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "channel" ; "Ion channel / sub-cellular molecular dynamics." ; . ### http://www.wikidata.org/entity/Q901584 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "cran" ; "Comprehensive R Archive Network." . ### https://bio.tools/ontology/operation_0337 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "visualization_tool" ; "Visualization or graphical user interface." . ### https://bio.tools/ontology/operation_2945 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "analysis_tool" ; "Post-processing, signal analysis, or statistics." . ### https://w3id.org/tvbo/AdditiveNoise rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Additive noise"@en . ### https://w3id.org/tvbo/Aggregation rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Aggregation" ; "Specifies how to aggregate values across a dimension. Used for loss functions to define per-element loss with reduction." ; ; . ### https://w3id.org/tvbo/AggregationType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "AggregationType" ; "How to aggregate time series data" ; ; , , , , . ### https://w3id.org/tvbo/Algorithm rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Algorithm" ; "A complete specification of an iterative parameter tuning algorithm. Combines update rules, objectives, observations, and hyperparameters." ; ; . ### https://w3id.org/tvbo/AlgorithmInclude rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "AlgorithmInclude" ; "Reference to an included algorithm with optional argument overrides. Allows combining algorithms with different hyperparameter values." ; ; . ### https://w3id.org/tvbo/Argument rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Argument" ; "A function argument with explicit value specification. Value can be: literal (number/string), reference to input (input.key), or cross-observation reference (observation_name.output_key)." ; ; . ### https://w3id.org/tvbo/Attractor rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Attractor"@en . ### https://w3id.org/tvbo/Backend rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:comment "A code-generation or simulation backend (JAX, TVB, PyRates, tvboptim, NetworkDynamics.jl, BifurcationKit.jl)."@en ; rdfs:label "Backend"@en . ### https://w3id.org/tvbo/BackendCapability rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:comment "A feature a backend either provides or lacks (autodiff, JIT, GPU, vectorised RNG, delay buffer, stochastic solver, stiff solver, continuation solver, code generation, etc.). Used to gate task support."@en ; rdfs:label "Backend capability"@en . ### https://w3id.org/tvbo/BidsEntities rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "BidsEntities" ; "BIDS filename entities (BEP017-aligned) for provenance and data discovery. Reusable on Network, BrainAtlas, Tractogram, or any dataset with BIDS-conformant naming." ; ; . ### https://w3id.org/tvbo/Bifurcation rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Bifurcation"@en . ### https://w3id.org/tvbo/BifurcationEvent rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:comment "Reified record of a bifurcation in a specific model along a specific parameter."@en ; rdfs:label "Bifurcation event"@en . ### https://w3id.org/tvbo/Bistable rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/BogdanovTakens rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Bogdanov-Takens"@en . ### https://w3id.org/tvbo/BoundaryCondition rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "BoundaryCondition" ; ; . ### https://w3id.org/tvbo/BoundaryConditionType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "BoundaryConditionType" ; ; , , , . ### https://w3id.org/tvbo/BrainRegionSeries rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "BrainRegionSeries" ; "A series whose values represent latitude" ; ; . ### https://w3id.org/tvbo/BranchSwitch rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "BranchSwitch" ; "Specification for switching from a detected bifurcation point to a new branch (periodic orbits from Hopf, fold continuation, etc.). Each BranchSwitch says: \"from which special point on the parent branch, continue what kind of object, with what settings.\" Override parent solver settings via the inline continuation field — only explicitly set attributes take effect; everything else is inherited from the parent Continuation." ; ; . ### https://w3id.org/tvbo/Bursting rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/Callable rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Callable" ; ; . ### https://w3id.org/tvbo/Case rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Case" ; ; . ### https://w3id.org/tvbo/Chaotic rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/ClassReference rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "ClassReference" ; "Reference to a class that can be instantiated and called. Used for external library classes (e.g., tvboptim.Bold, custom monitors). The class is instantiated with constructor_args, then called with call_args. Generalizable pattern: works for tvboptim, TVB, or any Python class." ; ; . ### https://w3id.org/tvbo/ColoredNoise rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Coloured noise"@en . ### https://w3id.org/tvbo/ConditionalBlock rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "ConditionalBlock" ; "A single condition and its corresponding equation segment." ; ; . ### https://w3id.org/tvbo/Continuation rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Continuation" ; "Complete specification of a numerical continuation / bifurcation analysis. All universal solver settings live directly here. Toolkit-specific string options go in the options slot. When used inside a BranchSwitch, only explicitly set attributes override the parent's values." ; ; . ### https://w3id.org/tvbo/ContinuationAlgorithm rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "ContinuationAlgorithm" ; "Predictor-corrector algorithm for numerical continuation." ; ; , , . ### https://w3id.org/tvbo/Coupling rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( xsd:string ) ] ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( xsd:string ) ] ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Coupling" ; ; . ### https://w3id.org/tvbo/CouplingInput rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] . ### https://w3id.org/tvbo/DataSource rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "DataSource" ; "Specification for loading external/empirical data." ; ; . ### https://w3id.org/tvbo/DerivedObservation rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "DerivedObservation" ; "Observation derived from one or more other observations. Examples: - fc (from bold) - single source transformation - fc_corr (from fc and fc_target) - multi-source comparison Unlike regular Observations, these don't generate monitor classes but are computed from existing observation values." ; ; . ### https://w3id.org/tvbo/DerivedParameter rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "DerivedParameter" ; ; . ### https://w3id.org/tvbo/DerivedVariable rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "DerivedVariable" ; ; . ### https://w3id.org/tvbo/Deterministic rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/DevelopmentStatus rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "DevelopmentStatus" ; "Development status of the software. Based on repostatus.org categories." ; ; , , , , , , . ### https://w3id.org/tvbo/DifferentialOperator rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "DifferentialOperator" ; ; . ### https://w3id.org/tvbo/DimensionType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "DimensionType" ; "Dimensions along which operations can be applied" ; ; , , , , , , , . ### https://w3id.org/tvbo/Discretization rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Discretization" ; "Discretization method for boundary value problems in continuation (periodic orbits, connecting orbits, quasi-periodic tori). Specifies the method; method-specific numerics go in parameters." ; ; . ### https://w3id.org/tvbo/DiscretizationMethod rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "DiscretizationMethod" ; ; , , , . ### https://w3id.org/tvbo/Distribution rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Distribution" ; "A probability distribution for sampling parameters or initial conditions. Standard distributions (Uniform, Gaussian) are specified by name and domain/parameters. Custom distributions use a Function for the PDF/sampling rule. Default name is Uniform when only domain is given." ; ; . ### https://w3id.org/tvbo/DynamicalProperty rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:comment "Top-level grouping for qualitative phase-space properties."@en ; rdfs:label "Dynamical property"@en . ### https://w3id.org/tvbo/DynamicalRegime rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Dynamical regime"@en . ### https://w3id.org/tvbo/Dynamics rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Dynamics" ; "NeuralMassModel" ; ; ; "Successor class replacing deprecated NeuralMassModel." . ### https://w3id.org/tvbo/EcosystemEnum rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "EcosystemEnum" ; "Package ecosystem or registry the software is distributed through." ; ; , , , , , , , . ### https://w3id.org/tvbo/Edge rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Edge" ; "An edge in a network. Two modes: explicit (source+target set, scalar parameters in YAML) or template (no source/target, N×N matrix measure in HDF5). Both coexist in the same edges list." ; ; . ### https://w3id.org/tvbo/ElementType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "ElementType" ; ; , , , . ### https://w3id.org/tvbo/EnvironmentType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "EnvironmentType" ; ; , , , . ### https://w3id.org/tvbo/Equation rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Equation" ; ; . ### https://w3id.org/tvbo/Event rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Event" ; "A discrete or continuous event that modifies the system during simulation. Generalizes Stimulus: can represent external inputs (stimulus type), threshold-triggered state changes (continuous/discrete type), or time-scheduled interventions (preset_time type). Attaches to components (nodes/edges) or to the experiment level." ; ; . ### https://w3id.org/tvbo/EventType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "EventType" ; "Type of event triggering mechanism." ; ; , , , . ### https://w3id.org/tvbo/Excitable rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/ExecutionConfig rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "ExecutionConfig" ; "Configuration for computational execution (parallelization, precision, hardware)." ; ; . ### https://w3id.org/tvbo/Exploration rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Exploration" ; "Parameter space exploration (grid search, sweep)." ; ; . ### https://w3id.org/tvbo/ExplorationAxis rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "ExplorationAxis" ; "One axis of a parameter exploration grid. Points to an existing Parameter (by dotted reference, e.g. \"ReducedWongWang.w\" or \"FastLinearCoupling.G\") and supplies the sweep specification (domain, explored_values, or per-element overrides). No new Parameter is created." ; ; . ### https://w3id.org/tvbo/FieldStateVariable rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "FieldStateVariable" ; ; . ### https://w3id.org/tvbo/File rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "File" ; ; . ### https://w3id.org/tvbo/FixedPoint rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/FoldOfLimitCycles rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Fold of limit cycles"@en . ### https://w3id.org/tvbo/FreeParameter rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "FreeParameter" ; "One degree of freedom in an OptimizationStage. References an existing Parameter by dotted scope (e.g. \"ReducedWongWang.w\" or \"FastLinearCoupling.G\") and supplies optimization-specific metadata (heterogeneous, shape, bounds, initial value). No new Parameter is created here." ; ; . ### https://w3id.org/tvbo/Function rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Function" ; "A function with explicit input -> transformation -> output flow. Can be equation-based (symbolic) or software-based (callable). In a pipeline, functions are chained: output of one becomes input of next." ; ; . ### https://w3id.org/tvbo/FunctionCall rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "FunctionCall" ; "Invocation of a function in a pipeline. Can reference a defined Function by name, OR inline a callable directly for external library functions, OR inline an equation, OR use class_call for class instantiation. Mirrors Function attributes so pipeline steps can be self-contained. The `name` is an optional step label (used in pipelines for keyed access to step outputs); it is NOT a global identifier (singleton uses like `loss`, `observable` may omit it)." ; ; . ### https://w3id.org/tvbo/GraphGenerator rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "GraphGenerator" ; """Backend-agnostic graph generator specification. Captures the mathematical family (type) and its parameters so that each backend can emit the correct constructor call (Graphs.jl, NetworkX, etc.). The number of nodes is always taken from Network.number_of_nodes. """ ; ; . ### https://w3id.org/tvbo/Hemisphere rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "Hemisphere" ; ; , , . ### https://w3id.org/tvbo/HomoclinicBifurcation rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/Hopf rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/ImagingModality rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "ImagingModality" ; ; , , , , . ### https://w3id.org/tvbo/InitialState rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "InitialState" ; "How to obtain the starting equilibrium or periodic orbit for continuation. Most robust: time-integrate to steady state." ; ; . ### https://w3id.org/tvbo/InitialStateMethod rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "InitialStateMethod" ; "Strategy for obtaining the starting equilibrium or periodic orbit." ; ; , , , . ### https://w3id.org/tvbo/Integrator rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Integrator" ; "Fixed-step or adaptive ODE integrator with TVB-specific extensions (noise, transient time, etc.). Inherits abs_tol, rel_tol from Solver. Overrides method default to 'euler'." ; ; . ### https://w3id.org/tvbo/LimitCycle rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/LossFunction rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "LossFunction" ; "A loss function for optimization with optional aggregation. Extends Function with aggregation specification for per-element losses." ; ; . ### https://w3id.org/tvbo/Matrix rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Matrix" ; "Adjacency matrix of a network." ; ; . ### https://w3id.org/tvbo/Mesh rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Mesh" ; ; . ### https://w3id.org/tvbo/ModelFeature rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:comment "Intrinsic structural trait of a Dynamics model (e.g. sigmoid activation, fast-slow decomposition, E/I subpopulations). Distinct from BackendCapability: a feature is what the model has, a capability is what a backend provides."@en ; rdfs:label "Model feature"@en . ### https://w3id.org/tvbo/ModelParadigm rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "ModelParadigm" ; "Computational paradigm or modeling approach supported by the tool." ; ; , , , , , , , , , , , , , , . ### https://w3id.org/tvbo/ModelType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "ModelType" ; "Coarse classification of a Dynamics model by its mathematical/biological origin. Used for filtering and display in list_db()." ; ; , , , , , , . ### https://w3id.org/tvbo/MultiplicativeNoise rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Multiplicative noise"@en . ### https://w3id.org/tvbo/Multistable rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/NDArray rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "NDArray" ; ; . ### https://w3id.org/tvbo/Network rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Network" ; "Connectivity" , "Connectome" , "Graph" , "Network" ; "Network specification with nodes, edges, and reusable coupling configurations. Supports both explicit node/edge representation and matrix-based connectivity (Connectome compatibility)." ; ; . ### https://w3id.org/tvbo/Node rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Node" ; "A node in a network with its own dynamics and properties" ; ; . ### https://w3id.org/tvbo/Noise rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Noise" ; ; . ### https://w3id.org/tvbo/NoiseType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "NoiseType" ; ; , , , . ### https://w3id.org/tvbo/NumericalDiscretizationMethod rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "NumericalDiscretizationMethod" ; "Numerical discretization method for boundary value problems (periodic orbits, connecting orbits, quasi-periodic tori)." ; ; , , , . ### https://w3id.org/tvbo/Observation rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Observation" ; "Unified class for all observation/measurement specifications. Covers monitors (BOLD, EEG), tuning observables, and derived quantities. Pipeline is a sequence of Functions with input -> output flow." ; ; . ### https://w3id.org/tvbo/OperatorType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "OperatorType" ; ; , , , . ### https://w3id.org/tvbo/Optimization rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Optimization" ; "Configuration for parameter optimization. Inherits single-stage fields from OptimizationStage. For multi-stage workflows, use 'stages' (ignores inherited single-stage fields). Loss equation references observations directly by name." ; ; . ### https://w3id.org/tvbo/OptimizationStage rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "OptimizationStage" ; "A single stage in a multi-stage optimization workflow. Stages run sequentially, with each stage potentially using different parameters, shapes, learning rates, and algorithms." ; ; . ### https://w3id.org/tvbo/Option rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Option" ; "A toolkit-specific key-value option (string name + string value). Used for backend settings that are not universal numeric parameters (e.g., solver name, tangent method, jacobian type)." ; ; . ### https://w3id.org/tvbo/Oscillatory rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/PDE rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "PDE" ; "Partial differential equation problem definition." ; ; . ### https://w3id.org/tvbo/PDESolver rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "PDESolver" ; ; . ### https://w3id.org/tvbo/Parameter rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Parameter" ; ; . ### https://w3id.org/tvbo/Parcellation rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Parcellation" ; ; . ### https://w3id.org/tvbo/PeriodDoubling rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Period doubling"@en . ### https://w3id.org/tvbo/PhysicalDimension rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "PhysicalDimension" ; "Physical dimension categories for LEMS and dimensional analysis. Each dimension decomposes into SI base dimensions (M, L, T, I, K, N)." ; ; , , , , , , , , , , , , , . ### https://w3id.org/tvbo/Pitchfork rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Pitchfork"@en . ### https://w3id.org/tvbo/ProgrammingLanguageEnum rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "ProgrammingLanguageEnum" ; "Programming languages relevant to computational neuroscience tools. Mapped to Wikidata identifiers." ; ; , , , , , , , , , , , , , . ### https://w3id.org/tvbo/Provenance rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Provenance" ; "W3C PROV-O aligned provenance. Reusable on any entity (Network, TimeSeries, Dynamics, etc.)." ; ; . ### https://w3id.org/tvbo/Quiescent rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/RandomStream rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "RandomStream" ; ; . ### https://w3id.org/tvbo/Range rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Range" ; "Specifies a range for array generation, parameter bounds, or grid exploration." ; ; . ### https://w3id.org/tvbo/ReductionType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "ReductionType" ; "Operations for reducing/aggregating values across dimensions" ; ; , , , , . ### https://w3id.org/tvbo/RegionMapping rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "RegionMapping" ; "Maps vertices to parent regions for hierarchical/aggregated coupling" ; ; . ### https://w3id.org/tvbo/RequirementRole rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "RequirementRole" ; ; , , , , . ### https://w3id.org/tvbo/SaddleNode rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/Sample rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Sample" ; ; . ### https://w3id.org/tvbo/SamplingAxis rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "SamplingAxis" ; "Dimension along which a distribution is sampled." ; ; , . ### https://w3id.org/tvbo/ScalarValue rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "ScalarValue" ; "A scalar value: float, integer, string, or boolean. Used for slots that accept literals of any primitive type, such as argument values which may be numbers, strings, references, or booleans." ; ; . ### https://w3id.org/tvbo/SexEnum rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "SexEnum" ; ; , , . ### https://w3id.org/tvbo/SimulationExperiment rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "SimulationExperiment" ; ; . ### https://w3id.org/tvbo/SimulationScale rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "SimulationScale" ; "Spatial / organizational scale at which a tool operates. Multi-valued: a tool can span multiple scales. Mapped to SIO and Wikidata where possible." ; ; , , , , . ### https://w3id.org/tvbo/SimulationStudy rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "SimulationStudy" ; ; . ### https://w3id.org/tvbo/SimulationTask rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:comment "A computational task: forward integration in some formalism, parameter exploration, gradient-based optimisation, numerical continuation, or bifurcation analysis."@en ; rdfs:label "Simulation task"@en . ### https://w3id.org/tvbo/SoftwarePackage rdf:type owl:Class ; rdfs:subClassOf owl:Thing ; rdfs:label "Software package" . ### https://w3id.org/tvbo/Solver rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Solver" ; "Lightweight specification of a numerical ODE solver / integrator. Covers adaptive solvers (Vern9, Rodas5, Tsit5, etc.) used in shooting methods, initial-state integration, and other contexts where only the algorithm and tolerances matter." ; ; . ### https://w3id.org/tvbo/SparseFormat rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "SparseFormat" ; ; , , . ### https://w3id.org/tvbo/SpatialDomain rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "SpatialDomain" ; ; . ### https://w3id.org/tvbo/SpatialField rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "SpatialField" ; ; . ### https://w3id.org/tvbo/SpecimenEnum rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "SpecimenEnum" ; "A set of permissible types for specimens used in brain atlas creation." ; ; , , , . ### https://w3id.org/tvbo/StandardGraphType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "StandardGraphType" ; """Well-known graph generator families with automatic backend mapping. The type field on GraphGenerator is a free string; this enum lists common types that get automatic code generation for Julia (Graphs.jl) and Python (NetworkX). """ ; ; , , , , , , , . ### https://w3id.org/tvbo/StateValue rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "StateValue" ; "A named state variable value for per-node initialization." ; ; . ### https://w3id.org/tvbo/StateVariable rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "StateVariable" ; ; . ### https://w3id.org/tvbo/Stimulus rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Stimulus" ; ; . ### https://w3id.org/tvbo/Stochasticity rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "Stochasticity character of the model definition itself, independent of any optional integrator-level noise injection."@en ; rdfs:label "Stochasticity character"@en . ### https://w3id.org/tvbo/StrangeAttractor rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/SubcriticalHopf rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Subcritical Hopf"@en . ### https://w3id.org/tvbo/SupercriticalHopf rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/SystemType rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "SystemType" ; ; , . ### https://w3id.org/tvbo/TemporalApplicableEquation rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "TemporalApplicableEquation" ; ; . ### https://w3id.org/tvbo/TimeSeries rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:dateTime ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "TimeSeries" ; "Time series data from simulations or measurements. Supports BIDS-compatible export for computational modeling (BEP034)." ; ; ; "Supports BIDS BEP034 computational modeling extension." , "Use to_bids() method in Python class to export as BIDS dataset." . ### https://w3id.org/tvbo/ToolRole rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "ToolRole" ; "Primary function of the tool in a simulation workflow." ; ; , , , , , , , , , . ### https://w3id.org/tvbo/Torus rdf:type owl:Class ; rdfs:subClassOf . ### https://w3id.org/tvbo/Tractogram rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Tractogram" ; "Reference to tractography/diffusion MRI data used to derive structural connectivity" ; ; . ### https://w3id.org/tvbo/Transcritical rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "Transcritical"@en . ### https://w3id.org/tvbo/TuningObjective rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "TuningObjective" ; "Defines what the tuning algorithm optimizes for. Can be an activity target (FIC) or a connectivity target (EIB)." ; ; . ### https://w3id.org/tvbo/UnitEnum rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( ) ] ; rdfs:subClassOf owl:Thing ; rdfs:isDefinedBy ; rdfs:label "UnitEnum" ; "Physical units of measurement for model parameters, state variables, and integration settings. Uses conventional abbreviations as values, mapped to the QUDT ontology (http://qudt.org/vocab/unit/) with UO cross-references where available." ; ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , . ### https://w3id.org/tvbo/UpdateRule rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "UpdateRule" ; "Defines how a parameter is updated based on observables. Represents iterative learning rules like FIC or EIB updates. Functions from experiment.functions are available in the equation." ; ; . ### https://w3id.org/tvbo/AggregationType#first rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "first (AggregationType)" ; "First value in window" ; "first" . ### https://w3id.org/tvbo/AggregationType#last rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "last (AggregationType)" ; "Last value in window" ; "last" . ### https://w3id.org/tvbo/AggregationType#mean rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "mean (AggregationType)" ; "Average over time" ; "mean" . ### https://w3id.org/tvbo/AggregationType#none rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "none (AggregationType)" ; "No aggregation" ; "none" . ### https://w3id.org/tvbo/AggregationType#window rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "window (AggregationType)" ; "Sliding window aggregation" ; "window" . ### https://w3id.org/tvbo/BoundaryConditionType#Dirichlet rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Dirichlet (BoundaryConditionType)" ; "Dirichlet" . ### https://w3id.org/tvbo/BoundaryConditionType#Neumann rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Neumann (BoundaryConditionType)" ; "Neumann" . ### https://w3id.org/tvbo/BoundaryConditionType#Periodic rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Periodic (BoundaryConditionType)" ; "Periodic" . ### https://w3id.org/tvbo/BoundaryConditionType#Robin rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Robin (BoundaryConditionType)" ; "Robin" . ### https://w3id.org/tvbo/ContinuationAlgorithm#MoorePenrose rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "MoorePenrose (ContinuationAlgorithm)" ; "Moore-Penrose continuation." ; "MoorePenrose" . ### https://w3id.org/tvbo/ContinuationAlgorithm#Natural rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Natural (ContinuationAlgorithm)" ; "Natural parameter continuation. Simple parameter stepping, no arc-length constraint." ; "Natural" . ### https://w3id.org/tvbo/ContinuationAlgorithm#PALC rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "PALC (ContinuationAlgorithm)" ; "Pseudo-arclength continuation (default). Uses weighted dot product constraint." ; "PALC" . ### https://w3id.org/tvbo/DevelopmentStatus#active rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "active (DevelopmentStatus)" ; "Actively developed with regular releases." ; "active" . ### https://w3id.org/tvbo/DevelopmentStatus#concept rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "concept (DevelopmentStatus)" ; "Minimal or no implementation; ideas / prototypes." ; "concept" . ### https://w3id.org/tvbo/DevelopmentStatus#inactive rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "inactive (DevelopmentStatus)" ; "No longer actively developed; may still work." ; "inactive" . ### https://w3id.org/tvbo/DevelopmentStatus#moved rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "moved (DevelopmentStatus)" ; "Project has been moved to a different location." ; "moved" . ### https://w3id.org/tvbo/DevelopmentStatus#suspended rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "suspended (DevelopmentStatus)" ; "Development paused; may resume in future." ; "suspended" . ### https://w3id.org/tvbo/DevelopmentStatus#unsupported rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "unsupported (DevelopmentStatus)" ; "Released but no longer supported." ; "unsupported" . ### https://w3id.org/tvbo/DevelopmentStatus#wip rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "wip (DevelopmentStatus)" ; "Work in progress; not yet feature-complete." ; "wip" . ### https://w3id.org/tvbo/DimensionType#batch rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "batch (DimensionType)" ; "Batch dimension (for parallel processing)" ; "batch" . ### https://w3id.org/tvbo/DimensionType#frequency rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "frequency (DimensionType)" ; "Frequency dimension (spectral analysis)" ; "frequency" . ### https://w3id.org/tvbo/DimensionType#mode rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "mode (DimensionType)" ; "Mode dimension (e.g., coupling modes)" ; "mode" . ### https://w3id.org/tvbo/DimensionType#node rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "node (DimensionType)" ; "Network node dimension (general graph term)" ; "node" . ### https://w3id.org/tvbo/DimensionType#region rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "region (DimensionType)" ; "Spatial/regional dimension (alias for node in brain networks)" ; "region" . ### https://w3id.org/tvbo/DimensionType#sample rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "sample (DimensionType)" ; "Sample/trial/realization dimension" ; "sample" . ### https://w3id.org/tvbo/DimensionType#state rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "state (DimensionType)" ; "State variable dimension" ; "state" . ### https://w3id.org/tvbo/DimensionType#time rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "time (DimensionType)" ; "Temporal dimension" ; "time" . ### https://w3id.org/tvbo/DiscretizationMethod#FDM rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "FDM (DiscretizationMethod)" ; "Finite Difference Method" ; "FDM" . ### https://w3id.org/tvbo/DiscretizationMethod#FEM rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "FEM (DiscretizationMethod)" ; "Finite Element Method" ; "FEM" . ### https://w3id.org/tvbo/DiscretizationMethod#FVM rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "FVM (DiscretizationMethod)" ; "Finite Volume Method" ; "FVM" . ### https://w3id.org/tvbo/DiscretizationMethod#Spectral rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Spectral (DiscretizationMethod)" ; "Spectral" . ### https://w3id.org/tvbo/EcosystemEnum#bioconda rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "bioconda (EcosystemEnum)" ; "Bioinformatics Conda channel." ; "bioconda" . ### https://w3id.org/tvbo/EcosystemEnum#github rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "github (EcosystemEnum)" ; "Distributed via GitHub releases." ; "github" . ### https://w3id.org/tvbo/EcosystemEnum#julia_registry rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "julia_registry (EcosystemEnum)" ; "Julia General package registry." ; "julia_registry" . ### https://w3id.org/tvbo/ElementType#hexahedron rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "hexahedron (ElementType)" ; "hexahedron" . ### https://w3id.org/tvbo/ElementType#quad rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "quad (ElementType)" ; "quad" . ### https://w3id.org/tvbo/ElementType#tetrahedron rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "tetrahedron (ElementType)" ; "tetrahedron" . ### https://w3id.org/tvbo/ElementType#triangle rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "triangle (ElementType)" ; "triangle" . ### https://w3id.org/tvbo/EnvironmentType#conda rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "conda (EnvironmentType)" ; "Conda environment." ; "conda" . ### https://w3id.org/tvbo/EnvironmentType#docker rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "docker (EnvironmentType)" ; "Docker container." ; "docker" . ### https://w3id.org/tvbo/EnvironmentType#singularity rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "singularity (EnvironmentType)" ; "Singularity/Apptainer container." ; "singularity" . ### https://w3id.org/tvbo/EnvironmentType#venv rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "venv (EnvironmentType)" ; "Python virtual environment." ; "venv" . ### https://w3id.org/tvbo/EventType#continuous rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "continuous (EventType)" ; "Triggered when condition function crosses zero (root-finding). Maps to ContinuousCallback / ContinuousComponentCallback." ; "continuous" . ### https://w3id.org/tvbo/EventType#discrete rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "discrete (EventType)" ; "Triggered when condition function returns true (checked at each step). Maps to DiscreteCallback / DiscreteComponentCallback." ; "discrete" . ### https://w3id.org/tvbo/EventType#preset_time rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "preset_time (EventType)" ; "Triggered at predetermined time points. Maps to PresetTimeCallback / PresetTimeComponentCallback." ; "preset_time" . ### https://w3id.org/tvbo/EventType#stimulus rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "stimulus (EventType)" ; "Continuous time-dependent input signal (e.g., external current). Legacy Stimulus behavior." ; "stimulus" . ### https://w3id.org/tvbo/Hemisphere#both rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "both (Hemisphere)" ; "B" , "LR" , "bilateral" ; "both" . ### https://w3id.org/tvbo/Hemisphere#left rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "left (Hemisphere)" ; "L" , "lh" ; "left" . ### https://w3id.org/tvbo/Hemisphere#right rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "right (Hemisphere)" ; "R" , "rh" ; "right" . ### https://w3id.org/tvbo/ImagingModality#BOLD rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "BOLD (ImagingModality)" ; "Blood Oxygen Level Dependent signal." ; "BOLD" . ### https://w3id.org/tvbo/ImagingModality#EEG rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "EEG (ImagingModality)" ; "Electroencephalography." ; "EEG" . ### https://w3id.org/tvbo/ImagingModality#IEEG rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "IEEG (ImagingModality)" ; "Intracranial Electroencephalography." ; "IEEG" . ### https://w3id.org/tvbo/ImagingModality#MEG rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "MEG (ImagingModality)" ; "Magnetoencephalography." ; "MEG" . ### https://w3id.org/tvbo/ImagingModality#SEEG rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "SEEG (ImagingModality)" ; "Stereoelectroencephalography." ; "SEEG" . ### https://w3id.org/tvbo/InitialStateMethod#from_branch rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "from_branch (InitialStateMethod)" ; "Start from a point on a previously computed branch." ; "from_branch" . ### https://w3id.org/tvbo/InitialStateMethod#given rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "given (InitialStateMethod)" ; "Use the model's default initial values directly." ; "given" . ### https://w3id.org/tvbo/InitialStateMethod#newton rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "newton (InitialStateMethod)" ; "Use Newton's method to find the nearest fixed point." ; "newton" . ### https://w3id.org/tvbo/InitialStateMethod#time_integration rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "time_integration (InitialStateMethod)" ; "Integrate the ODE forward until convergence (robust, default)." ; "time_integration" . ### https://w3id.org/tvbo/ModelParadigm#dynamic_mean_field rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "dynamic_mean_field (ModelParadigm)" ; "Dynamic mean-field approximation (e.g., Deco et al.)." ; "dynamic_mean_field" . ### https://w3id.org/tvbo/ModelParadigm#generic rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "generic (ModelParadigm)" ; "General-purpose, not specific to neuroscience." ; "generic" . ### https://w3id.org/tvbo/ModelParadigm#model_description rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "model_description (ModelParadigm)" ; "Declarative model specification language." ; "model_description" . ### https://w3id.org/tvbo/ModelType#field rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "field (ModelType)" ; "Spatially distributed neural-field models described by integro- differential or PDE formulations." ; "field" . ### https://w3id.org/tvbo/ModelType#generic rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "generic (ModelType)" ; "Generic / normal-form dynamical systems not specific to neural modelling (e.g. Generic2dOscillator, GenericLinear)." ; "generic" . ### https://w3id.org/tvbo/ModelType#mean_field rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "mean_field (ModelType)" ; "Mathematically derived mean-field models obtained by exact reduction of spiking networks (Ott-Antonsen ansatz, Lorentzian heterogeneity, etc.). Examples: MontbrioPazoRoxin, CoombesByrne, ReducedWongWang, ZerlautAdaptationFirstOrder." ; "mean_field" . ### https://w3id.org/tvbo/ModelType#neural_mass rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "neural_mass (ModelType)" ; "Phenomenological population-rate / neural-mass models that describe synaptic and firing-rate dynamics without an explicit derivation from single-neuron statistics. Examples: JansenRit, WilsonCowan, LarterBreakspear, TsodyksMarkram." ; "neural_mass" . ### https://w3id.org/tvbo/ModelType#phase_oscillator rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "phase_oscillator (ModelType)" ; "Phase-reduced or Kuramoto-type oscillator models. Examples: Kuramoto, SupHopf." ; "phase_oscillator" . ### https://w3id.org/tvbo/ModelType#phenomenological rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "phenomenological (ModelType)" ; "Empirical / phenomenological models that capture macroscopic dynamics without direct biophysical derivation. Examples: Epileptor2D, Epileptor5D." ; "phenomenological" . ### https://w3id.org/tvbo/ModelType#spiking rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "spiking (ModelType)" ; "Single-neuron or conductance-based spiking models (HH, AdEx, LIF, Izhikevich, etc.). These can be used as nodes in a network alongside mean-field models." ; "spiking" . ### https://w3id.org/tvbo/NoiseType#brown rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "brown (NoiseType)" ; "brown" . ### https://w3id.org/tvbo/NoiseType#gaussian rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "gaussian (NoiseType)" ; "gaussian" . ### https://w3id.org/tvbo/NoiseType#pink rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "pink (NoiseType)" ; "pink" . ### https://w3id.org/tvbo/NoiseType#white rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "white (NoiseType)" ; "white" . ### https://w3id.org/tvbo/NumericalDiscretizationMethod#collocation rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "collocation (NumericalDiscretizationMethod)" ; "Orthogonal collocation at Gauss points." ; "collocation" . ### https://w3id.org/tvbo/NumericalDiscretizationMethod#poincare rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "poincare (NumericalDiscretizationMethod)" ; "Poincaré shooting." ; "poincare" . ### https://w3id.org/tvbo/NumericalDiscretizationMethod#shooting rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "shooting (NumericalDiscretizationMethod)" ; "Standard multiple shooting." ; "shooting" . ### https://w3id.org/tvbo/NumericalDiscretizationMethod#trapezoid rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "trapezoid (NumericalDiscretizationMethod)" ; "Trapezoidal rule discretization." ; "trapezoid" . ### https://w3id.org/tvbo/OperatorType#curl rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "curl (OperatorType)" ; "curl" . ### https://w3id.org/tvbo/OperatorType#divergence rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "divergence (OperatorType)" ; "divergence" . ### https://w3id.org/tvbo/OperatorType#gradient rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "gradient (OperatorType)" ; "gradient" . ### https://w3id.org/tvbo/OperatorType#laplacian rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "laplacian (OperatorType)" ; "laplacian" . ### https://w3id.org/tvbo/PhysicalDimension#capacitance rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "capacitance (PhysicalDimension)" ; "Capacitance [M⁻¹ L⁻² T⁴ I²]" ; "capacitance" . ### https://w3id.org/tvbo/PhysicalDimension#charge rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "charge (PhysicalDimension)" ; "Electric charge [T I]" ; "charge" . ### https://w3id.org/tvbo/PhysicalDimension#concentration rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "concentration (PhysicalDimension)" ; "Concentration [L⁻³ N]" ; "concentration" . ### https://w3id.org/tvbo/PhysicalDimension#conductance rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "conductance (PhysicalDimension)" ; "Conductance [M⁻¹ L⁻² T³ I²]" ; "conductance" . ### https://w3id.org/tvbo/PhysicalDimension#current rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "current (PhysicalDimension)" ; "Electric current [I]" ; "current" . ### https://w3id.org/tvbo/PhysicalDimension#length rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "length (PhysicalDimension)" ; "Length [L]" ; "length" . ### https://w3id.org/tvbo/PhysicalDimension#none rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "none (PhysicalDimension)" ; "Dimensionless" ; "none" . ### https://w3id.org/tvbo/PhysicalDimension#per_time rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "per_time (PhysicalDimension)" ; "Inverse time [T⁻¹]" ; "per_time" . ### https://w3id.org/tvbo/PhysicalDimension#resistance rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "resistance (PhysicalDimension)" ; "Resistance [M L² T⁻³ I⁻²]" ; "resistance" . ### https://w3id.org/tvbo/PhysicalDimension#substance rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "substance (PhysicalDimension)" ; "Amount of substance [N]" ; "substance" . ### https://w3id.org/tvbo/PhysicalDimension#temperature rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "temperature (PhysicalDimension)" ; "Temperature [K]" ; "temperature" . ### https://w3id.org/tvbo/PhysicalDimension#time rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "time (PhysicalDimension)" ; "Time [T]" ; "time" . ### https://w3id.org/tvbo/PhysicalDimension#voltage rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "voltage (PhysicalDimension)" ; "Voltage [M L² T⁻³ I⁻¹]" ; "voltage" . ### https://w3id.org/tvbo/PhysicalDimension#volume rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "volume (PhysicalDimension)" ; "Volume [L³]" ; "volume" . ### https://w3id.org/tvbo/ReductionType#max rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "max (ReductionType)" ; "Maximum value" ; "max" . ### https://w3id.org/tvbo/ReductionType#mean rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "mean (ReductionType)" ; "Arithmetic mean" ; "mean" . ### https://w3id.org/tvbo/ReductionType#min rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "min (ReductionType)" ; "Minimum value" ; "min" . ### https://w3id.org/tvbo/ReductionType#none rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "none (ReductionType)" ; "No reduction (return per-element values)" ; "none" . ### https://w3id.org/tvbo/ReductionType#sum rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "sum (ReductionType)" ; "Sum of values" ; "sum" . ### https://w3id.org/tvbo/RequirementRole#analysis rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "analysis (RequirementRole)" ; "Post-processing / analysis tool." ; "analysis" . ### https://w3id.org/tvbo/RequirementRole#dev rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "dev (RequirementRole)" ; "Development / build dependency." ; "dev" . ### https://w3id.org/tvbo/RequirementRole#engine rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "engine (RequirementRole)" ; "Primary simulation/processing engine." ; "engine" . ### https://w3id.org/tvbo/RequirementRole#optional rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "optional (RequirementRole)" ; "Optional or extra feature dependency." ; "optional" . ### https://w3id.org/tvbo/RequirementRole#runtime rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "runtime (RequirementRole)" ; "General runtime dependency." ; "runtime" . ### https://w3id.org/tvbo/SamplingAxis#space rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "space (SamplingAxis)" ; "Sample once per node (heterogeneous parameter or spatially varying IC)." ; "space" . ### https://w3id.org/tvbo/SamplingAxis#time rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "time (SamplingAxis)" ; "Resample every integration timestep (stochastic time-varying input)." ; "time" . ### https://w3id.org/tvbo/SexEnum#female rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "female (SexEnum)" ; "Female" ; "female" . ### https://w3id.org/tvbo/SexEnum#male rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "male (SexEnum)" ; "Male" ; "male" . ### https://w3id.org/tvbo/SexEnum#other rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "other (SexEnum)" ; "Other or not reported" ; "other" . ### https://w3id.org/tvbo/SparseFormat#coo rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "coo (SparseFormat)" ; "Coordinate list (data, row, col)" ; "coo" . ### https://w3id.org/tvbo/SparseFormat#csr rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "csr (SparseFormat)" ; "Compressed Sparse Row (data, indices, indptr)" ; "csr" . ### https://w3id.org/tvbo/SparseFormat#dense rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "dense (SparseFormat)" ; "Dense N×N array with gzip compression" ; "dense" . ### https://w3id.org/tvbo/SpecimenEnum#Subject rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Subject (SpecimenEnum)" ; "Subject" . ### https://w3id.org/tvbo/SpecimenEnum#SubjectGroup rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "SubjectGroup (SpecimenEnum)" ; "SubjectGroup" . ### https://w3id.org/tvbo/SpecimenEnum#TissueSample rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "TissueSample (SpecimenEnum)" ; "TissueSample" . ### https://w3id.org/tvbo/SpecimenEnum#TissueSampleCollection rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "TissueSampleCollection (SpecimenEnum)" ; "TissueSampleCollection" . ### https://w3id.org/tvbo/StandardGraphType#BarabasiAlbert rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "BarabasiAlbert (StandardGraphType)" ; "Barabasi-Albert preferential attachment (params: k)" ; "BarabasiAlbert" . ### https://w3id.org/tvbo/StandardGraphType#Complete rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Complete (StandardGraphType)" ; "Complete graph (all-to-all)" ; "Complete" . ### https://w3id.org/tvbo/StandardGraphType#Cycle rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Cycle (StandardGraphType)" ; "Cycle graph (ring)" ; "Cycle" . ### https://w3id.org/tvbo/StandardGraphType#ErdosRenyi rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "ErdosRenyi (StandardGraphType)" ; "Erdos-Renyi random graph (params: p)" ; "ErdosRenyi" . ### https://w3id.org/tvbo/StandardGraphType#Grid rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Grid (StandardGraphType)" ; "Grid/lattice graph (params: dims)" ; "Grid" . ### https://w3id.org/tvbo/StandardGraphType#RandomRegular rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "RandomRegular (StandardGraphType)" ; "Random regular graph (params: k)" ; "RandomRegular" . ### https://w3id.org/tvbo/StandardGraphType#Star rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Star (StandardGraphType)" ; "Star graph" ; "Star" . ### https://w3id.org/tvbo/StandardGraphType#WattsStrogatz rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "WattsStrogatz (StandardGraphType)" ; "Watts-Strogatz small-world (params: k, p)" ; "WattsStrogatz" . ### https://w3id.org/tvbo/SystemType#continuous rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "continuous (SystemType)" ; "Continuous-time dynamics (e.g., ODE/SDE)." ; "continuous" . ### https://w3id.org/tvbo/SystemType#discrete rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "discrete (SystemType)" ; "Discrete-time dynamics (e.g., maps, iterated updates)." ; "discrete" . ### https://w3id.org/tvbo/ToolRole#backend_runtime rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "backend_runtime (ToolRole)" ; "Optimized execution backend for another simulator." ; "backend_runtime" . ### https://w3id.org/tvbo/ToolRole#workflow_framework rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "workflow_framework (ToolRole)" ; "Orchestration, model-building, or pipeline tool." ; "workflow_framework" . ### https://w3id.org/tvbo/UnitEnum#Hz_per_nA rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Hz_per_nA (UnitEnum)" ; "Hertz per nanoampere (neural gain)" ; "Hz_per_nA" . ### https://w3id.org/tvbo/UnitEnum#Mohm rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "Mohm (UnitEnum)" ; "Megaohm (MΩ)" ; "Mohm" . ### https://w3id.org/tvbo/UnitEnum#S_per_cm2 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "S_per_cm2 (UnitEnum)" ; "Siemens per square centimetre (conductance density)" ; "S_per_cm2" . ### https://w3id.org/tvbo/UnitEnum#S_per_m2 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "S_per_m2 (UnitEnum)" ; "Siemens per square metre (conductance density, SI)" ; "S_per_m2" . ### https://w3id.org/tvbo/UnitEnum#arbitrary_unit rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "arbitrary_unit (UnitEnum)" ; "Arbitrary units (a.u.)" ; "arbitrary_unit" . ### https://w3id.org/tvbo/UnitEnum#kg_per_s rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "kg_per_s (UnitEnum)" ; "Kilogram per second" ; "kg_per_s" . ### https://w3id.org/tvbo/UnitEnum#kohm_cm rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "kohm_cm (UnitEnum)" ; "Kilo-ohm centimetre (axial resistivity)" ; "kohm_cm" . ### https://w3id.org/tvbo/UnitEnum#mS_per_cm2 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "mS_per_cm2 (UnitEnum)" ; "Millisiemens per square centimetre (conductance density)" ; "mS_per_cm2" . ### https://w3id.org/tvbo/UnitEnum#mol_per_cm3 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "mol_per_cm3 (UnitEnum)" ; "Mole per cubic centimetre (mol/cm³)" ; "mol_per_cm3" . ### https://w3id.org/tvbo/UnitEnum#mol_per_m_per_A_per_s rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "mol_per_m_per_A_per_s (UnitEnum)" ; "Mole per metre per ampere per second (concentration-current coupling)" ; "mol_per_m_per_A_per_s" . ### https://w3id.org/tvbo/UnitEnum#nS_per_mV rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "nS_per_mV (UnitEnum)" ; "Nanosiemens per millivolt" ; "nS_per_mV" . ### https://w3id.org/tvbo/UnitEnum#per_unit rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "per_unit (UnitEnum)" ; "Per-unit (dimensionless power-systems convention)" ; "per_unit" . ### https://w3id.org/tvbo/UnitEnum#rad_per_ms rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "rad_per_ms (UnitEnum)" ; "Radian per millisecond" ; "rad_per_ms" . ### https://w3id.org/tvbo/UnitEnum#uA_per_cm2 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "uA_per_cm2 (UnitEnum)" ; "Microampere per square centimetre (current density)" ; "uA_per_cm2" . ### https://w3id.org/tvbo/UnitEnum#uF_per_cm2 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:isDefinedBy ; rdfs:label "uF_per_cm2 (UnitEnum)" ; "Microfarad per square centimetre (specific capacitance)" ; "uF_per_cm2" . ### https://w3id.org/tvbo/dbs/ClinicalImprovement rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "ClinicalImprovement (dbs)" ; "Relative improvement on a defined clinical score." ; ; "ClinicalImprovement" . ### https://w3id.org/tvbo/dbs/ClinicalScale rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "ClinicalScale (dbs)" ; "A clinical assessment inventory or structured scale composed of multiple scores or items." ; ; "ClinicalScale" . ### https://w3id.org/tvbo/dbs/ClinicalScore rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "ClinicalScore (dbs)" ; "Metadata about a clinical score or scale." ; ; "ClinicalScore" . ### https://w3id.org/tvbo/dbs/Contact rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Contact (dbs)" ; "Individual contact on a DBS electrode." ; ; "Contact" . ### https://w3id.org/tvbo/dbs/DBSDataset rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "DBSDataset (dbs)" ; "Collection of data related to a specific DBS study." ; ; "DBSDataset" . ### https://w3id.org/tvbo/dbs/DBSProtocol rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "DBSProtocol (dbs)" ; "A protocol describing DBS therapy, potentially bilateral or multi-lead." ; ; "DBSProtocol" . ### https://w3id.org/tvbo/dbs/DBSSubject rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "DBSSubject (dbs)" ; "Human or animal subject receiving DBS." ; ; "DBSSubject" . ### https://w3id.org/tvbo/dbs/EField rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "EField (dbs)" ; "Simulated electric field from DBS modeling." ; ; "EField" . ### https://w3id.org/tvbo/dbs/Electrode rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Electrode (dbs)" ; "Implanted DBS electrode and contact geometry." ; ; "Electrode" . ### https://w3id.org/tvbo/dbs/StimulationSetting rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:integer ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "StimulationSetting (dbs)" ; "DBS parameters for a specific session." ; ; "StimulationSetting" . ### https://w3id.org/tvbo/software/SimulationTool rdf:type owl:Class ; rdfs:subClassOf , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:date ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:date ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "SimulationTool (software)" ; "A software tool for computational neuroscience simulation, analysis, or model specification. Extends SoftwarePackage with neuroscience-specific controlled vocabularies for scale, paradigm, role, and interoperability. Aligned with CodeMeta v3 and DOAP." ; ; ; "SimulationTool" . ### https://w3id.org/tvbo/software/SoftwareEnvironment rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "SoftwareEnvironment (software)" ; "A reproducible software environment aggregating one or more SoftwareRequirement entries. Used by SimulationExperiment to specify the execution context." ; ; "SoftwareEnvironment" ; "An environment aggregates one or more SoftwareRequirement entries." , "Use SimulationExperiment.environment to reference a reusable environment." . ### https://w3id.org/tvbo/software/SoftwarePackage rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:anyURI ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "SoftwarePackage (software)" ; "Identity and metadata for a software package, aligned with schema.org/SoftwareApplication and CodeMeta v3." ; ; ; "SoftwarePackage" . ### https://w3id.org/tvbo/software/SoftwareRequirement rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:boolean ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "SoftwareRequirement (software)" ; "An individual software requirement binding a package to a version constraint and a role within an environment." ; ; "SoftwareRequirement" ; "Represents an individual requirement (package/module/library)." , "Use 'version_spec' instead of 'version' for semantic clarity." . ### https://w3id.org/tvbo/study/Dataset rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Dataset (study)" ; "A collection of subjects for a multi-subject study. Provides the subject/session structure needed for workflow rendering. Optionally backed by a BIDS directory layout." ; ; "Dataset" . ### https://w3id.org/tvbo/study/Session rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Session (study)" ; "A data collection session for a subject. Corresponds to a BIDS 'ses-' entity. Sessions capture longitudinal timepoints (baseline, follow-up), different experimental conditions, or repeated measures." ; ; "Session" . ### https://w3id.org/tvbo/study/Subject rdf:type owl:Class ; rdfs:subClassOf owl:Thing , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:string ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom xsd:float ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "0"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty ; owl:maxCardinality "1"^^xsd:nonNegativeInteger ] ; rdfs:isDefinedBy ; rdfs:label "Subject (study)" ; "A participant in a study. Each subject typically has their own brain network (connectome) and empirical recordings. Corresponds to a BIDS 'sub-' entity." ; ; "Subject" . ################################################################# # Individuals ################################################################# ### http://purl.obolibrary.org/obo/CL_0000099 rdf:type owl:NamedIndividual . ### http://purl.obolibrary.org/obo/CL_0000598 rdf:type owl:NamedIndividual . ### http://purl.obolibrary.org/obo/GO_0007214 rdf:type owl:NamedIndividual . ### http://purl.obolibrary.org/obo/GO_0035249 rdf:type owl:NamedIndividual . ### http://purl.obolibrary.org/obo/UBERON_0000956 rdf:type owl:NamedIndividual . ### http://purl.obolibrary.org/obo/UBERON_0002728 rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/Autodiff rdf:type owl:NamedIndividual , ; rdfs:label "Automatic differentiation"@en . ### https://w3id.org/tvbo/BifurcationAnalysis rdf:type owl:NamedIndividual , ; rdfs:comment "Detection and classification of bifurcations along a continuation branch."@en ; rdfs:label "Bifurcation analysis"@en . ### https://w3id.org/tvbo/BifurcationKit rdf:type owl:NamedIndividual , ; , ; , ; rdfs:label "BifurcationKit.jl"@en . ### https://w3id.org/tvbo/Bistable rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/BuiltinModelLibrary rdf:type owl:NamedIndividual , ; rdfs:label "Built-in model library"@en . ### https://w3id.org/tvbo/Bursting rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/CakanObermayer rdf:type owl:NamedIndividual , ; _:genid2490 ; , , ; , ; ; ; ; , ; , ; "true"^^xsd:boolean ; 6 ; """Adaptive linear-nonlinear (aLN) mean-field model of a network of adaptive exponential integrate-and-fire (AdEx) neurons, comprising one excitatory (E) and one inhibitory (I) population. Originally developed by Augustin, Ladenbauer, Liebe & Obermayer (2017) and used as the whole-brain mean-field in neurolib by Cakan, Jajcay & Obermayer (2021). The legacy tvb-o.owl ontology referred to this model by the short name ``Cortical`` (suffix ``_CO``); ``iri`` is preserved for backward ontology mapping while ``name`` reflects the canonical attribution. Defaults are taken verbatim from ``neurolib/models/aln/loadDefaultParams.py``. Note that the full aLN dynamics require a precomputed transfer-function lookup table (``aln-precalc/quantities_cascade.h5``) that maps the filtered mean input ``mu`` and the membrane-potential standard deviation ``sigma`` to a steady-state firing rate. The state-variable equations below are the structural filtered-mean-input scaffold; the nonlinear transfer function ``r_E = Phi(mu_E, sigma_E)`` cannot be expressed in YAML and is therefore approximated as a sigmoid for backend code generation.""" ; rdfs:label "CakanObermayer" ; "Cakan-Obermayer ALN"@en ; , ; , , , , , , , , , , , , , , , , , , , ; , , ; "neural_mass" . _:genid2490 rdf:type ; . ### https://w3id.org/tvbo/Chaotic rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/CodeGeneration rdf:type owl:NamedIndividual , ; rdfs:comment "Backend emits standalone simulator source code from a model specification."@en ; rdfs:label "Symbolic code generation"@en . ### https://w3id.org/tvbo/ContinuationSolver rdf:type owl:NamedIndividual , ; rdfs:label "Continuation solver"@en . ### https://w3id.org/tvbo/CoombesByrne rdf:type owl:NamedIndividual , ; _:genid2491 ; , ; , ; ; ; 4 ; """4D model describing the Ott-Antonsen reduction of infinite all-to-all coupled QIF neurons (Theta-neurons). Note: the original equations describe the dynamics of the Kuramoto parameter $Z$. Using the conformal transformation $Z=(1-W^\\star)/(1+W^\\star)$ and $W= \\pi r + i V$, we express the system dynamics in terms of two state variables $r$ and $V$ representing the average firing rate and the average membrane potential of our QIF neurons. The conductance variable and its derivative are $g$ and $q$. """ ; ; rdfs:label "CoombesByrne" ; "Coombes-Byrne"@en ; , , , , ; , , , ; "mean_field" . _:genid2491 rdf:type ; . ### https://w3id.org/tvbo/CoombesByrne2D rdf:type owl:NamedIndividual , ; _:genid2492 ; , ; , ; ; ; 2 ; ; rdfs:label "CoombesByrne2D" ; "Coombes-Byrne 2D"@en ; , , , ; , ; "mean_field" . _:genid2492 rdf:type ; . ### https://w3id.org/tvbo/CouplingInput rdf:type owl:NamedIndividual , . ### https://w3id.org/tvbo/DDEIntegration rdf:type owl:NamedIndividual , ; rdfs:comment "Forward integration of a delay differential equation (e.g. long-range axonal delays)."@en ; rdfs:label "DDE integration"@en . ### https://w3id.org/tvbo/DelayHistoryBuffer rdf:type owl:NamedIndividual , ; rdfs:comment "Storage and interpolation of past states required for DDE/SDDE integration."@en ; rdfs:label "Delay history buffer"@en . ### https://w3id.org/tvbo/Deterministic rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/DiffEqIntegrators rdf:type owl:NamedIndividual , ; rdfs:label "DifferentialEquations.jl integrators"@en . ### https://w3id.org/tvbo/DumontGutkin rdf:type owl:NamedIndividual , ; _:genid2493 ; , ; , ; ; ; ; 8 ; ; rdfs:label "DumontGutkin" ; "Dumont-Gutkin"@en ; , , , , , , , , , , , , , ; , , , , , , , ; "mean_field" . _:genid2493 rdf:type ; . ### https://w3id.org/tvbo/EIBalance rdf:type owl:NamedIndividual , ; rdfs:comment "Dynamic equilibrium between excitatory and inhibitory drive."@en ; rdfs:label "E/I balance"@en ; ; "E/I balance"@en . ### https://w3id.org/tvbo/Epileptor rdf:type owl:NamedIndividual ; _:genid2494 , _:genid2495 ; , , ; , ; ; ; ; "true"^^xsd:boolean ; 6 ; ; rdfs:label "Epileptor"@en . _:genid2494 rdf:type ; . _:genid2495 rdf:type ; . ### https://w3id.org/tvbo/Epileptor2D rdf:type owl:NamedIndividual , ; _:genid2496 ; , ; , ; ; ; 2 ; """Epileptor2D (E2D) is a phenomenological neural mass model consisting in the two-dimensional reduction ('x', 'z') of the original Epileptor model (see Epileptor5D; Proix et al., 2014, 2017). Note: ------ - Equations and default parameters are taken from (Proix et al.,2014), - The slow permittivity state-variable (z_E2D) can be modified to account for the time difference between the interictal (between seizures) and ictal (during seizure) states (see Proix et al., 2014).""" ; , ; ; rdfs:label "Epileptor2D" ; "Epileptor 2D"@en ; , , ; , , , , , , , , , , , ; , ; "phenomenological" . _:genid2496 rdf:type ; . ### https://w3id.org/tvbo/Epileptor3DStefanescuMcDonald rdf:type owl:NamedIndividual , ; , ; , ; ; ; ; "true"^^xsd:boolean ; 3 ; "Stefanescu-McDonald reduced 3D Epileptor variant migrated as a placeholder scaffold from the legacy tvb-o.owl ontology. The original publication for this exact variant could not be located; the only OWL-side parameter is `N` (population size, grounded to \"regulation of resting membrane potential\"). Equations are minimal placeholders: a fast (x1) - slow (z) excitable system inspired by the canonical Epileptor (Jirsa et al. 2014), gated by N. This scaffold preserves the ontology lineage and parameter grounding; it should be replaced with the published equations once located, or removed if the variant is confirmed obsolete." ; ; rdfs:label "Epileptor3DStefanescuMcDonald" ; "Epileptor 3D (Stefanescu-McDonald)"@en ; , , ; , ; "neural_mass" . ### https://w3id.org/tvbo/Epileptor5D rdf:type owl:NamedIndividual , ; _:genid2497 ; , , ; , ; ; ; ; "true"^^xsd:boolean ; 5 ; """Epilepor5D (E5D) is a phenomenological, coupled, nonlinear five-dimensional (i.e., five state-variables ('x1', 'y1', 'z', 'x2', 'y2')) neural mass model able to realistically reproduce the temporal dynamics of epileptic seizures and the alternating sequence of seizures (ictal and interictal state; Jirsa et al.,2014; El Houssaini et al., 2015, 2020). Epileptor5D comprises three different time scales interacting together and accounting for various electrographic patterns: - the fastest and intermediate time scales are two coupled oscillators ((x1, y1) and (x2, y2)), accounting respectively for the low-voltage fast discharges (i.e., very fast oscillations) and spike-and-wave discharges. - the slowest time scale is responsible for leading the autonomous switch between interictal and ictal states and is driven by a slow-permittivity variable z. This switching is accompanied by a direct current (DC) shift that has been recorded in vitro and in vivo. The main output of the model: -x1+ x2, bears analogy with the field potential, while the precise biophysical equivalent of the z variable is unknown and will be likely complex. Note: ------ - Equations and default parameters are taken from (Jirsa et al.,2014 & El Houssaini et al., 2015), - The integral coupling function g(x1) can be rewritten as an ordinary differential equation, which is technically introduced, here, as a sixth state-variable (see Jirsa et al.,2014), - The slow permittivity state-variable (z_E5D) can be modified to account for the time difference between the interictal (between seizures) and ictal (during seizure) states (see Proix et al., 2014).""" ; , ; ; rdfs:label "Epileptor5D" ; "Epileptor 5D"@en ; , , , ; , , , , , , , , , , , , , , , , , ; , , , , , ; "phenomenological" . _:genid2497 rdf:type ; . ### https://w3id.org/tvbo/EpileptorRestingState rdf:type owl:NamedIndividual , ; _:genid2498 ; , , ; , ; ; ; , ; "true"^^xsd:boolean ; 8 ; """Epileptor Resting-State (ERS) is an extension of the phenomenological neural mass model of Epileptor5D, tuned to express regionally specific physiological oscillations in addition to the epileptiform discharges (Courtiol et al., 2020). This extension was made using the Generic 2-dimensional Oscillator model (parametrized close to a supercritical Hopf Bifurcation) (Sanz-Leon et al., 2013, 2015) to reproduce the spontaneous local field potential-like signal. This model, its motivation and derivation can be found in the published article (Courtiol et al., 2020).""" ; , ; ; rdfs:label "EpileptorRestingState" ; "Epileptor (resting-state)"@en ; , , , , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , ; , , , , , , , ; "phenomenological" . _:genid2498 rdf:type ; . ### https://w3id.org/tvbo/EventDrivenIntegration rdf:type owl:NamedIndividual , ; rdfs:comment "Spike-based or hybrid event-driven simulation of a neural network."@en ; rdfs:label "Event-driven integration"@en . ### https://w3id.org/tvbo/Excitable rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/Excitation rdf:type owl:NamedIndividual , ; rdfs:comment "Generic depolarising synaptic effect; abstract parent of model-specific excitatory currents and conductances."@en ; rdfs:label "Excitation"@en ; ; "Excitation"@en . ### https://w3id.org/tvbo/ExcitatoryInhibitorySubpopulations rdf:type owl:NamedIndividual , ; rdfs:label "Excitatory/inhibitory subpopulations"@en . ### https://w3id.org/tvbo/FastSlowDecomposition rdf:type owl:NamedIndividual , ; rdfs:label "Fast-slow decomposition"@en . ### https://w3id.org/tvbo/FeedbackScaling rdf:type owl:NamedIndividual , ; rdfs:comment "Multiplicative gain applied to recurrent feedback. Control-theoretic concept with no faithful upstream GO mapping."@en ; rdfs:label "FeedbackScaling"@en ; "FeedbackScaling"@en . ### https://w3id.org/tvbo/FixedPoint rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/GPUSupport rdf:type owl:NamedIndividual , ; rdfs:label "GPU execution"@en . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD rdf:type owl:NamedIndividual , ; _:genid2499 ; , ; , ; ; ; ; 4 ; """4D model describing the Ott-Antonsen reduction of infinite all-to-all coupled QIF neurons (Theta-neurons) with Synaptic Depression adaptation mechanisms [Gastetal_2020]_. The two state variables :math:`r` and :math:`V` represent the average firing rate and the average membrane potential of our QIF neurons. :math:`A` and :math:`B` are respectively the adaptation variable and its derivative. The equations of the infinite QIF 2D population model read .. math:: \\dot{r} &= 1/\\tau (\\Delta/(\\pi \\tau) + 2 V r)\\\\ \\dot{V} &= 1/\\tau (V^2 - \\tau^2 \\pi^2 r^2 + \\eta + J \\tau r (1 - A) + I)\\\\ \\dot{A} &= 1/\\tau_A (B)\\\\ \\dot{B} &= 1/\\tau_A (-2 B - A + \\alpha r) \\\\ .. [Gastetal_2020] Gast, R., Schmidt, H., & Knösche, T. R. (2020). A mean-field description of bursting dynamics in spiking neural networks with short-term adaptation. *Neural Computation*, 32(9), 1615-1634.""" ; ; rdfs:label "GastSchmidtKnosche_SD" ; "Gast-Schmidt-Knosche (synaptic depression)"@en ; , , , , , , , , ; , , , ; "neural_mass" . _:genid2499 rdf:type ; . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF rdf:type owl:NamedIndividual , ; _:genid2500 ; , ; , ; ; ; ; 4 ; ; rdfs:label "GastSchmidtKnosche_SF" ; "Gast-Schmidt-Knosche (synaptic facilitation)"@en ; , , , , , , , , ; , , , ; "neural_mass" . _:genid2500 rdf:type ; . ### https://w3id.org/tvbo/Generic2dOscillator rdf:type owl:NamedIndividual , ; _:genid2501 , _:genid2502 ; , , ; , ; ; "true"^^xsd:boolean ; 2 ; "The Generic 2-Dimensional Oscillator (G2D) is a phenomenological, coupled, nonlinear two-dimensional (i.e., two state-variables ('V', 'W')) oscillatory, neural mass model. The G2D is a generalization of the well-known FitzHugh-Nagumo model (FitzHugh, 1961; Nagumo et. al, 1962), adapted here for reproducing a wilder class of dynamical configurations of physiological phenomena as observed in neuronal population using phase-portrait method." ; , ; rdfs:label "Generic2dOscillator" ; "Generic 2-D oscillator"@en ; , , , , , , , , , , , ; , ; "generic" . _:genid2501 rdf:type ; . _:genid2502 rdf:type ; . ### https://w3id.org/tvbo/GenericLinear rdf:type owl:NamedIndividual , ; ; ; ; "false"^^xsd:boolean ; 1 ; "The Generic Linear (GL) is a phenomenological, linear one-dimensional (i.e., one state-variable ('x')) neural mass model (Galán, 2008)." ; ; rdfs:label "GenericLinear" ; "Generic linear"@en ; ; ; "generic" . ### https://w3id.org/tvbo/GradientBasedOptimization rdf:type owl:NamedIndividual , ; rdfs:label "Gradient-based optimisation"@en . ### https://w3id.org/tvbo/HomoclinicBifurcation rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/Hopf rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/Hopfield rdf:type owl:NamedIndividual , ; ; ; ; ; 2 ; """The Hopfield neural network is a discrete time dynamical system composed of multiple binary nodes, with a connectivity matrix built from a predetermined set of patterns. The update, inspired from the spin-glass model (used to describe magnetic properties of dilute alloys), is based on a random scanning of every node. The existence of a fixed point dynamics is guaranteed by a Lyapunov function. The Hopfield network is expected to have those multiple patterns as attractors (multistable dynamical system). When the initial conditions are close to one of the 'learned' patterns, the dynamical system is expected to relax on the corresponding attractor. A possible output of the system is the final attractive state (interpreted as an associative memory). Various extensions of the initial model have been proposed, among which a noiseless and continuous version [Hopfield 1984] having a slightly different Lyapunov function, but essentially the same dynamical properties, with more straightforward physiological Interpretation. A continuous Hopfield neural network (with a sigmoid transfer function) can indeed be interpreted as a network of neural masses with every node corresponding to the mean field activity of a local brain region, with many bridges with the Wilson Cowan model [WC_1972]. Note: - This model uses the modifications implemented by Golos et al. (2015).""" ; , ; rdfs:label "Hopfield" ; "Hopfield"@en ; , ; , ; "neural_mass" . ### https://w3id.org/tvbo/Inhibition rdf:type owl:NamedIndividual , ; rdfs:comment "Generic hyperpolarising synaptic effect; abstract parent of model-specific inhibitory currents and conductances."@en ; rdfs:label "Inhibition"@en ; ; "Inhibition"@en . ### https://w3id.org/tvbo/InternalCoupling rdf:type owl:NamedIndividual , ; rdfs:comment "Within-population synaptic coupling, distinct from long-range inter-node coupling."@en ; rdfs:label "InternalCoupling"@en ; ; "InternalCoupling"@en . ### https://w3id.org/tvbo/JAX rdf:type owl:NamedIndividual , ; , , , , ; , , , ; rdfs:label "JAX"@en . ### https://w3id.org/tvbo/JITCompilation rdf:type owl:NamedIndividual , ; rdfs:label "Just-in-time compilation"@en . ### https://w3id.org/tvbo/Jansen1995 rdf:type owl:NamedIndividual ; _:genid2503 ; , ; , ; ; ; ; , ; , ; "false"^^xsd:boolean ; 6 ; rdfs:label "Jansen 1995"@en ; "Jansen 1995"@en . _:genid2503 rdf:type ; . ### https://w3id.org/tvbo/JansenRit rdf:type owl:NamedIndividual , ; _:genid2504 ; , ; , ; ; ; ; , ; , ; "false"^^xsd:boolean ; 6 ; "The Jansen-Rit is a neurophysiologically-inspired neural mass model of a cortical column (or area), developed to simulate the electrical brain activity, i.e., the electroencephalogram (EEG), and evoked-potentials (EPs; Jansen et al., 1993; Jansen & Rit, 1995). It is a 6-dimensional, non-linear, model describing the local average states of three interconnected neural populations: pyramidal cells (PCs), excitatory and inhibitory interneurons (EINs and IINs), interacting through positive and negative feedback loops. The main output of the model is the average membrane potential of the pyramidal cell population, as the sum of the potential of these cells is thought to be the source of the potential recorded in the EEG." ; , ; rdfs:label "JansenRit" ; "Jansen-Rit"@en ; , , ; , , , , , , , , , , , , ; , , , , , ; "neural_mass" . _:genid2504 rdf:type ; . ### https://w3id.org/tvbo/JansenRit1995 rdf:type owl:NamedIndividual , ; _:genid2505 ; , ; , ; ; ; ; 6 ; "Lumped-parameter cortical column model with three neural populations: pyramidal cells, excitatory interneurons, and inhibitory interneurons. Each population is modeled by a PSP block (2nd-order linear filter) and a sigmoidal potential-to-firing-rate transformation. The model produces EEG-like output as the pyramidal PSP difference v_pyr = y1 - y2. Based on Lopes da Silva et al. (1974, 1976) and Jansen et al. (1993)." ; rdfs:label "JansenRit1995" ; "Jansen-Rit 1995"@en ; ; , , , , , , , , ; , , , , , ; "neural_mass" . _:genid2505 rdf:type ; . ### https://w3id.org/tvbo/JuliaJIT rdf:type owl:NamedIndividual , ; rdfs:label "Julia JIT"@en . ### https://w3id.org/tvbo/KIonEx rdf:type owl:NamedIndividual , ; _:genid2506 ; , , ; , ; ; ; , ; "true"^^xsd:boolean ; 5 ; """It describes the mean-field activity of a population of Hodgkin-Huxley-type neurons (Depannemaker et al 2022) linking the slow fluctuations of intra- and extra-cellular potassium ion concentrations to the mean membrane potential, and the synaptic input to the population firing rate. The model is derived as the mathematical limit of an infinite number of all-to-all coupled neurons, resulting in 5 state variables: :math:`x` represents a phenomenological variable connected to the firing rate, :math:`V` represent the average membrane potential, :math:`n` represents the gating variable for potassium K, :math:`\\Delta K_{int}` represent the intracellular potassium concentration, :math:`K_g` represents the extracellular potassium buffering by the external bath \"\"\"""" ; ; ; rdfs:label "KIonEx" ; "K-ion exchange"@en ; , , , , , , , , , , , , , , , , , , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; , , , , ; "mean_field" . _:genid2506 rdf:type ; . ### https://w3id.org/tvbo/Kuramoto rdf:type owl:NamedIndividual , ; ; , ; ; "false"^^xsd:boolean ; 1 ; "The Kuramoto model is a model of synchronization phenomena derived by Yoshiki Kuramoto in 1975 which has since been applied to diverse domains including the study of neuronal oscillations and synchronization." ; , , ; rdfs:label "Kuramoto" ; "Kuramoto"@en ; , ; ; ; "phase_oscillator" . ### https://w3id.org/tvbo/Kuramoto2 rdf:type owl:NamedIndividual ; ; , ; ; 2 ; rdfs:label "Kuramoto (extended)"@en ; "Kuramoto (extended)"@en . ### https://w3id.org/tvbo/KuramotoModel2 rdf:type owl:NamedIndividual , ; rdfs:label "KuramotoModel2" ; , , , ; ; ; "phase_oscillator" . ### https://w3id.org/tvbo/LarterBreakspear rdf:type owl:NamedIndividual , ; _:genid2507 ; , , ; , , ; ; ; ; , ; , ; "true"^^xsd:boolean ; 3 ; """The Larter-Breakspear is an extension (Breakspear et al., 2003a, 2003b) of the biophysical-inspired neural mass model of a cortical column (or area) from Larter et al. (1999), initially developed to simulate firing rate activity from focal region involved in partial seizure. It is determined by voltage- and ligand-gated ions channels and feedback between intensively interconnected excitatory and inhibitory neurons. The Larter-Breakspear is a 3D model describing the local average states of two interconnected neural populations: pyramidal cells (PCs) and inhibitory interneurons (IINs), with an additional variable representing the potassium channels in the population of PCs. The membrane potential of the pyramidal cells is the focus of the model and is governed by sodium, potassium, calcium and “leaky” ion channels, of which the voltage-gated potassium channels are modelled in more detail. The excitatory to excitatory connections are modelled in more detail as glutamatergic connections with AMPA and NMDA receptors. Note: - Equations and default parameters are taken from (Breakspear et al., 2003b), - All equations and parameters are non-dimensional and normalized to neural capacitance C = 1.""" ; rdfs:label "LarterBreakspear" ; "Larter-Breakspear"@en ; , , , , , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; , , ; "neural_mass" . _:genid2507 rdf:type ; . ### https://w3id.org/tvbo/LimitCycle rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/ModelJansen1995 rdf:type owl:NamedIndividual , ; "JR model with canonical parameters; long-range input is injected via a coupling term. Output is pyramidal potential difference." ; rdfs:label "ModelJansen1995" ; ; , , , , , , , , ; , , , , , ; "neural_mass" . ### https://w3id.org/tvbo/MontbrioPazoRoxin rdf:type owl:NamedIndividual , ; _:genid2508 , _:genid2509 ; , , ; , ; ; ; 2 ; ; rdfs:label "MontbrioPazoRoxin" ; "Montbrio-Pazo-Roxin"@en ; , , , , , , ; , ; "mean_field" . _:genid2508 rdf:type ; . _:genid2509 rdf:type ; . ### https://w3id.org/tvbo/Multistable rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/NetworkDynamics rdf:type owl:NamedIndividual , ; , , , , ; , , , , ; rdfs:label "NetworkDynamics.jl"@en . ### https://w3id.org/tvbo/NetworkXTopology rdf:type owl:NamedIndividual , ; rdfs:label "NetworkX topology API"@en . ### https://w3id.org/tvbo/NumPyExecution rdf:type owl:NamedIndividual , ; rdfs:label "NumPy execution"@en . ### https://w3id.org/tvbo/NumericalContinuation rdf:type owl:NamedIndividual , ; rdfs:comment "Tracking of equilibria, periodic orbits, or invariant manifolds as a parameter is varied."@en ; rdfs:label "Numerical continuation"@en . ### https://w3id.org/tvbo/ODEIntegration rdf:type owl:NamedIndividual , ; rdfs:comment "Forward integration of a deterministic ordinary differential equation."@en ; rdfs:label "ODE integration"@en . ### https://w3id.org/tvbo/Oscillatory rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/ParameterExploration rdf:type owl:NamedIndividual , ; rdfs:label "Parameter exploration"@en . ### https://w3id.org/tvbo/PyRates rdf:type owl:NamedIndividual , ; , , ; , ; rdfs:label "PyRates"@en . ### https://w3id.org/tvbo/Quiescent rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/RDEIntegration rdf:type owl:NamedIndividual , ; rdfs:comment "Forward integration of a random differential equation: parameters drawn from a distribution (Bayesian / ensemble simulation)."@en ; rdfs:label "RDE integration"@en . ### https://w3id.org/tvbo/ReducedWongWang rdf:type owl:NamedIndividual , ; , ; ; ; ; , ; , ; "false"^^xsd:boolean ; 1 ; """Reduced WongWang (RWW) is a biologically-inspired one-dimensional (i.e., only one state-variable 'S') neural mass model that approximates the realistic temporal dynamics of a detailed spiking and conductance-based synaptic large-scale network (Deco et al., 2013). RWW is the dynamical mean-field (DMF) reduction of the Reduced WongWang Exc-Inh model, that consists in disentangling the contribution of the two neuronal populations (excitatory and inhibitory) in order to study the time evolution of just one pool of neurons for each network node (Wong & Wang, 2006). It results that the dynamics of each network node described the temporal evolution of the opening probability of the NMDA channels.""" ; , ; rdfs:label "ReducedWongWang" ; "Reduced Wong-Wang"@en ; , ; , , , , , , , ; ; "mean_field" . ### https://w3id.org/tvbo/ReducedWongWangExcInh rdf:type owl:NamedIndividual , ; , ; ; ; ; ; , ; , ; "false"^^xsd:boolean ; 2 ; "Reduced WongWang Exc-Inh (RWW_EI) is a biologically-inspired two-dimensional (i.e., two state-variables ('S_E','S_I')) neural mass model describing the dynamics of a cortical area consisting of local networks of excitatory (AMPA) and inhibitory (GABA-A) populations of spiking neurons interconnected via NMDA synapses. These neurons are organized into an inhibitory population accounting for 20% of the neurons and an excitatory population accounting for 80% of the neurons." ; ; rdfs:label "ReducedWongWangExcInh" ; "Reduced Wong-Wang (E/I)"@en ; , , , , , ; , , , , , , , , , , , , , , , , , , ; , ; "mean_field" . ### https://w3id.org/tvbo/ReducedWongWangFunc rdf:type owl:NamedIndividual ; ; ; ; ; 1 ; rdfs:label "Reduced Wong-Wang (functional)"@en ; "Reduced Wong-Wang (functional)"@en . ### https://w3id.org/tvbo/ReducedWongWangTvboptim rdf:type owl:NamedIndividual , ; ; ; ; ; 1 ; """The Reduced Wong-Wang (RWW) model is a biophysically-based neural mass model that describes the dynamics of NMDA-mediated synaptic gating (Deco et al., 2013). It captures the slow dynamics relevant for resting-state fMRI and has been widely used for modeling whole-brain functional connectivity. RWW is the dynamical mean-field (DMF) reduction of the Wong & Wang (2006) spiking model. Each network node is described by a single state variable S representing the average NMDA synaptic gating (fraction of open channels). The total synaptic input x combines local excitatory recurrence (w), external input (I_o), and long-range network coupling (instant and delayed) scaled by the synaptic coupling strength J_N. The sigmoid transfer function H(x) maps the total input current to the average population firing rate. In a network setting, the global coupling strength G (a coupling parameter) scales the structural connectivity weights that modulate inter-regional communication.""" ; , ; rdfs:label "ReducedWongWangTvboptim" ; "Reduced Wong-Wang (tvboptim)"@en ; , ; , , , , , , , ; ; "mean_field" . ### https://w3id.org/tvbo/SDDEIntegration rdf:type owl:NamedIndividual , ; rdfs:comment "Forward integration of a stochastic delay differential equation."@en ; rdfs:label "SDDE integration"@en . ### https://w3id.org/tvbo/SDEIntegration rdf:type owl:NamedIndividual , ; rdfs:comment "Forward integration of a stochastic differential equation."@en ; rdfs:label "SDE integration"@en . ### https://w3id.org/tvbo/SaddleNode rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/SigmoidActivation rdf:type owl:NamedIndividual , ; rdfs:label "Sigmoid activation"@en . ### https://w3id.org/tvbo/StefanescuJirsa2D rdf:type owl:NamedIndividual , ; , , ; , ; ; ; "true"^^xsd:boolean ; 4 ; "Reduced set of FitzHugh-Nagumo oscillators (Stefanescu & Jirsa 2008). A low-dimensional description of globally coupled heterogeneous excitatory and inhibitory FitzHugh-Nagumo populations. The reduction projects an infinite population onto `number_of_modes` modes and yields per-mode scalar state variables (xi, eta) for the excitatory and (alpha, beta) for the inhibitory subnetwork. The mode-coupling matrices Aik, Bik, Cik and the per-mode inputs IE_i, II_i, m_i, n_i, e_i, f_i are derived offline by Gaussian quadrature over the heterogeneity distribution N(mu, sigma^2); see TVB reference implementation `tvb.simulator.models.stefanescu_jirsa.ReducedSetFitzHughNagumo`." ; rdfs:label "StefanescuJirsa2D" ; "Stefanescu-Jirsa 2D"@en ; , , , , , , , , ; , , , , , , , ; , , , ; "neural_mass" . ### https://w3id.org/tvbo/StefanescuJirsa3D rdf:type owl:NamedIndividual , ; , , ; , ; ; ; "true"^^xsd:boolean ; 6 ; "Reduced set of Hindmarsh-Rose oscillators (Stefanescu & Jirsa 2008). A low-dimensional description of globally coupled heterogeneous excitatory and inhibitory Hindmarsh-Rose populations. The reduction projects an infinite population onto `number_of_modes` modes and yields per-mode scalar state variables (xi, eta, tau) for the excitatory and (alpha, beta, gamma) for the inhibitory subnetwork. The mode-coupling matrices A_ik, B_ik, C_ik and the per-mode coefficients a_i, b_i, c_i, d_i, e_i, f_i, h_i, p_i, IE_i, II_i, m_i, n_i are derived offline by Gaussian quadrature over the heterogeneity distribution N(mu, sigma^2); see TVB reference implementation `tvb.simulator.models.stefanescu_jirsa.ReducedSetHindmarshRose`." ; rdfs:label "StefanescuJirsa3D" ; "Stefanescu-Jirsa 3D"@en ; , , , , , , , , , , , , , , ; , , , , , , , , , , , ; , , , , , ; "neural_mass" . ### https://w3id.org/tvbo/StiffSolver rdf:type owl:NamedIndividual , ; rdfs:label "Stiff solver"@en . ### https://w3id.org/tvbo/StochasticSolver rdf:type owl:NamedIndividual , ; rdfs:label "Stochastic solver"@en . ### https://w3id.org/tvbo/StrangeAttractor rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/SupHopf rdf:type owl:NamedIndividual , ; _:genid2510 ; , ; , ; ; 2 ; """Supercritical Hopf (SUPH) is an oscillatory/excitable neural mass model that describe the normal form of a supercritical Hopf bifurcation in Cartesian coordinates (Kuznetsov, 2013; Deco et al., 2017). This normal form has a supercritical bifurcation at 'a=0' with 'a' the bifurcation parameter in the model. So for 'a < 0', the local dynamics has a stable fixed point and the system corresponds to a damped oscillatory state, whereas for 'a > 0', the local dynamics enters in a stable limit cycle and the system switches to an oscillatory state.""" ; ; rdfs:label "SupHopf" ; "Supercritical Hopf"@en ; ; , ; , ; "generic" . _:genid2510 rdf:type ; . ### https://w3id.org/tvbo/SupercriticalHopf rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/TVB rdf:type owl:NamedIndividual , ; , , , ; , , , , ; rdfs:label "TVB"@en . ### https://w3id.org/tvbo/TimeScaling rdf:type owl:NamedIndividual , ; rdfs:comment "Time-constant or rate parameter that sets the temporal scale of a dynamical variable. No faithful upstream GO mapping (GO_0050789 was rejected as overly generic)."@en ; rdfs:label "TimeScaling"@en ; "TimeScaling"@en . ### https://w3id.org/tvbo/Torus rdf:type owl:NamedIndividual . ### https://w3id.org/tvbo/TsodyksMarkram rdf:type owl:NamedIndividual , ; , ; , ; ; ; ; 3 ; "Tsodyks-Markram mean-field model of short-term synaptic plasticity. A three-variable neural mass model with firing rate E, synaptic depression variable x, and facilitation variable u. The transfer function uses a softplus nonlinearity α·log(1 + exp(s/α)). Reproduces the dynamics from BifurcationKit.jl/examples/TMModel.jl." ; rdfs:label "TsodyksMarkram" ; "Tsodyks-Markram"@en ; , ; , , , , , , ; , , ; "neural_mass" . ### https://w3id.org/tvbo/VectorizedRNG rdf:type owl:NamedIndividual , ; rdfs:label "Vectorised RNG"@en . ### https://w3id.org/tvbo/WilsonCowan rdf:type owl:NamedIndividual , ; _:genid2511 , _:genid2512 ; , , ; , ; , ; ; ; , ; , ; "false"^^xsd:boolean ; 2 ; """The Wilson and Cowan model consists of two populations or masses, one excitatory and one inhibitory, that are described by their mean firings rates E and I respectively (Wilson and Cowan, 1972, 1973). This model is the minimal representation of a NMM with a coarse-grained description of the overall activity of a large-scale neuronal network, as opposed to being a detailed biophysical model. While employing just two differential equations, it has been used to build various biophysically realistic models (Liley et al., 1999; Daffertshofer and van Wijk, 2011). Key parameters in the model are the strength of connectivity between each subtype of population (excitatory and inhibitory) and the strength of input to each subpopulation. The Input parameters P and Q also provide the entry point for local and long-range connectivity, that is, the activity coming from neighboring and distant populations respectively. Varying Input and connectivity generates a diversity of dynamical behaviors that are representative of observed activity in the brain, like multistability, oscillations, traveling waves and spatial patterns. We consider the transmission parameters of the excitatory population to be glutamatergic and therefore to be modified by glutamatergic receptors. The inhibitory population is considered as GABAergic. Note: - Equations and parameter names are taken from (Wilson and Cowan, 1972 and Sanz-Leon et al., 2015) - Default parameters are taken from Fig. 4 p.10 (Wilson and Cowan, 1972) - The model in Sanz-Leon et., 2015 includes more parameters than the original model, which can be traced in the description of the parameters.""" ; , ; rdfs:label "WilsonCowan" ; "Wilson-Cowan"@en ; , , , , , ; , , , , , , , , , , , , , , , , , , , , , , ; , ; "neural_mass" . _:genid2511 rdf:type ; . _:genid2512 rdf:type ; . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder rdf:type owl:NamedIndividual , ; _:genid2513 ; , ; , ; ; ; ; , ; , ; "true"^^xsd:boolean ; 5 ; , ; rdfs:label "ZerlautAdaptationFirstOrder" ; "Zerlaut (first-order adaptation)"@en ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; , , , , ; "mean_field" . _:genid2513 rdf:type ; . ### https://w3id.org/tvbo/ZetterbergJansen rdf:type owl:NamedIndividual , ; _:genid2514 ; ; , ; ; ; ; 6 ; ; rdfs:label "ZetterbergJansen" ; "Zetterberg-Jansen"@en ; , , , ; , , , , , , , , , , , , , , , , , ; , , , , , , , , , , , ; "neural_mass" . _:genid2514 rdf:type ; . ### https://w3id.org/tvbo/tvboptim rdf:type owl:NamedIndividual , ; , , , ; , , ; rdfs:label "tvboptim"@en . ### https://w3id.org/tvbo/CakanObermayer/derived_variables/r_E rdf:type owl:NamedIndividual , ; "Excitatory population firing rate. In full aLN this is ``Phi(mu_E_eff, s_EE)`` with ``Phi`` precomputed; here a sigmoid stand-in is used." ; rdfs:label "r_E (CakanObermayer derived variable)" ; "r_E" ; "r_E" ; "r_max/(1 + exp(-k_phi*(mu_se - mu_th)))" . ### https://w3id.org/tvbo/CakanObermayer/derived_variables/r_I rdf:type owl:NamedIndividual , ; "Inhibitory population firing rate (sigmoid stand-in for aLN Phi)." ; rdfs:label "r_I (CakanObermayer derived variable)" ; "r_I" ; "r_I" ; "r_max/(1 + exp(-k_phi*(mu_si - mu_th)))" . ### https://w3id.org/tvbo/CakanObermayer/parameters/C rdf:type owl:NamedIndividual , ; "200.0"^^xsd:double ; , , ; rdfs:label "C (CakanObermayer parameter)" ; "Membrane capacitance of a single AdEx neuron." ; "C" ; "pF" . ### https://w3id.org/tvbo/CakanObermayer/parameters/E_A rdf:type owl:NamedIndividual , ; "-80.0"^^xsd:double ; ; rdfs:label "E_A (CakanObermayer parameter)" ; "Reversal potential of the adaptation current." ; "E_A" ; "mV" . ### https://w3id.org/tvbo/CakanObermayer/parameters/E_L rdf:type owl:NamedIndividual , ; "-65.0"^^xsd:double ; ; rdfs:label "E_L (CakanObermayer parameter)" ; "Leak reversal potential of a single AdEx neuron." ; "E_L" ; "mV" . ### https://w3id.org/tvbo/CakanObermayer/parameters/I_A rdf:type owl:NamedIndividual , ; "0.0"^^xsd:double ; ; rdfs:label "I_A (CakanObermayer parameter)" ; "Subthreshold adaptation conductance amplitude (a in AdEx)." ; "I_A" ; "nS" . ### https://w3id.org/tvbo/CakanObermayer/parameters/J_EE rdf:type owl:NamedIndividual , ; "2.43"^^xsd:double ; , , ; rdfs:label "J_EE (CakanObermayer parameter)" ; "Maximum excitatory-to-excitatory PSC amplitude (Jee_max in neurolib)." ; "J_EE" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/J_EI rdf:type owl:NamedIndividual , ; "-3.3"^^xsd:double ; , ; rdfs:label "J_EI (CakanObermayer parameter)" ; "Maximum inhibitory-to-excitatory PSC amplitude (Jei_max in neurolib, signed negative)." ; "J_EI" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/J_IE rdf:type owl:NamedIndividual , ; "2.6"^^xsd:double ; ; rdfs:label "J_IE (CakanObermayer parameter)" ; "Maximum excitatory-to-inhibitory PSC amplitude (Jie_max in neurolib)." ; "J_IE" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/J_II rdf:type owl:NamedIndividual , ; "-1.64"^^xsd:double ; ; rdfs:label "J_II (CakanObermayer parameter)" ; "Maximum inhibitory-to-inhibitory PSC amplitude (Jii_max in neurolib, signed negative)." ; "J_II" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/k_phi rdf:type owl:NamedIndividual , ; "1.0"^^xsd:double ; rdfs:label "k_phi (CakanObermayer parameter)" ; "Steepness of the sigmoid transfer-function surrogate." ; "k_phi" . ### https://w3id.org/tvbo/CakanObermayer/parameters/mu_E rdf:type owl:NamedIndividual , ; "0.4"^^xsd:double ; rdfs:label "mu_E (CakanObermayer parameter)" ; "Mean external input current to the excitatory population (mue_ext_mean)." ; "mu_E" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/mu_I rdf:type owl:NamedIndividual , ; "0.3"^^xsd:double ; , , ; rdfs:label "mu_I (CakanObermayer parameter)" ; "Mean external input current to the inhibitory population (mui_ext_mean)." ; "mu_I" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/mu_th rdf:type owl:NamedIndividual , ; "1.0"^^xsd:double ; rdfs:label "mu_th (CakanObermayer parameter)" ; "Half-maximum input of the sigmoid transfer-function surrogate." ; "mu_th" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/r_max rdf:type owl:NamedIndividual , ; "0.2"^^xsd:double ; rdfs:label "r_max (CakanObermayer parameter)" ; "Asymptotic firing rate used in the sigmoid surrogate for the aLN transfer function (sigmoid stand-in for the precomputed lookup table)." ; "r_max" ; "per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/s_EE rdf:type owl:NamedIndividual , ; "1.5"^^xsd:double ; , ; rdfs:label "s_EE (CakanObermayer parameter)" ; "Standard deviation of the random-coupling-driven membrane-potential fluctuations entering the E->E channel (sigmae_ext component)." ; "s_EE" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/s_EI rdf:type owl:NamedIndividual , ; "1.5"^^xsd:double ; ; rdfs:label "s_EI (CakanObermayer parameter)" ; "Standard deviation of the random-coupling-driven membrane-potential fluctuations entering the I->E channel." ; "s_EI" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/s_IE rdf:type owl:NamedIndividual , ; "1.5"^^xsd:double ; ; rdfs:label "s_IE (CakanObermayer parameter)" ; "Standard deviation of the random-coupling-driven membrane-potential fluctuations entering the E->I channel." ; "s_IE" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/s_II rdf:type owl:NamedIndividual , ; "1.5"^^xsd:double ; , ; rdfs:label "s_II (CakanObermayer parameter)" ; "Standard deviation of the random-coupling-driven membrane-potential fluctuations entering the I->I channel." ; "s_II" ; "mV_per_ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/tau_A rdf:type owl:NamedIndividual , ; "200.0"^^xsd:double ; rdfs:label "tau_A (CakanObermayer parameter)" ; "Time constant of the adaptation current." ; "tau_A" ; "ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/tau_se rdf:type owl:NamedIndividual , ; "2.0"^^xsd:double ; rdfs:label "tau_se (CakanObermayer parameter)" ; "Synaptic time constant of excitatory PSCs (E->E and E->I)." ; "tau_se" ; "ms" . ### https://w3id.org/tvbo/CakanObermayer/parameters/tau_si rdf:type owl:NamedIndividual , ; "5.0"^^xsd:double ; rdfs:label "tau_si (CakanObermayer parameter)" ; "Synaptic time constant of inhibitory PSCs (I->E and I->I)." ; "tau_si" ; "ms" . ### https://w3id.org/tvbo/CakanObermayer/state_variables/I_A_var rdf:type owl:NamedIndividual , ; "Adaptation current." ; rdfs:label "I_A_var (CakanObermayer state variable)" ; "I_A_var" ; "Derivative(I_A_var, t)" ; "(I_A*(mu_se - E_A) - I_A_var)/tau_A" . ### https://w3id.org/tvbo/CakanObermayer/state_variables/mu_se rdf:type owl:NamedIndividual , ; "Filtered mean synaptic input current to the excitatory population." ; rdfs:label "mu_se (CakanObermayer state variable)" ; "mu_se" ; "Derivative(mu_se, t)" ; "(J_EE*r_E + J_EI*r_I + mu_E + c_pop0 - I_A_var/C - mu_se)/tau_se" . ### https://w3id.org/tvbo/CakanObermayer/state_variables/mu_si rdf:type owl:NamedIndividual , ; "Filtered mean synaptic input current to the inhibitory population." ; rdfs:label "mu_si (CakanObermayer state variable)" ; "mu_si" ; "Derivative(mu_si, t)" ; "(J_IE*r_E + J_II*r_I + mu_I - mu_si)/tau_si" . ### https://w3id.org/tvbo/CoombesByrne/parameters/Delta rdf:type owl:NamedIndividual , ; "Half-width of heterogeneous noise distribution" ; "0.5"^^xsd:double ; rdfs:label "Delta (CoombesByrne parameter)" ; "Half-width of heterogeneous noise distribution" ; "Delta" . ### https://w3id.org/tvbo/CoombesByrne/parameters/alpha rdf:type owl:NamedIndividual , ; "Parameter of the alpha-function" ; "0.95"^^xsd:double ; rdfs:label "alpha (CoombesByrne parameter)" ; "Parameter of the alpha-function" ; "alpha" . ### https://w3id.org/tvbo/CoombesByrne/parameters/eta rdf:type owl:NamedIndividual , ; "Constant parameter to scale the rate of feedback from the firing rate variable to itself" ; "20.0"^^xsd:double ; ; rdfs:label "eta (CoombesByrne parameter)" ; """Constant parameter to scale the rate of feedback from the firing rate variable to itself""" ; "eta" . ### https://w3id.org/tvbo/CoombesByrne/parameters/k rdf:type owl:NamedIndividual , ; "Local coupling strength" ; "1.0"^^xsd:double ; rdfs:label "k (CoombesByrne parameter)" ; "Local coupling strength" ; "k" . ### https://w3id.org/tvbo/CoombesByrne/parameters/v_syn rdf:type owl:NamedIndividual , ; "QIF membrane reversal potential" ; "-10.0"^^xsd:double ; ; rdfs:label "v_syn (CoombesByrne parameter)" ; "QIF membrane reversal potential" ; "v_syn" . ### https://w3id.org/tvbo/CoombesByrne/state_variables/V rdf:type owl:NamedIndividual , ; rdfs:label "V (CoombesByrne state variable)" ; "V" ; "Derivative(V, t)" ; "V**2 + c_pop0 + eta + g*(-V + v_syn) - pi**2*r**2" . ### https://w3id.org/tvbo/CoombesByrne/state_variables/g rdf:type owl:NamedIndividual , ; rdfs:label "g (CoombesByrne state variable)" ; "g" ; "Derivative(g, t)" ; "alpha*q" . ### https://w3id.org/tvbo/CoombesByrne/state_variables/q rdf:type owl:NamedIndividual , ; rdfs:label "q (CoombesByrne state variable)" ; "q" ; "Derivative(q, t)" ; "alpha*(-g + pi*k*r - 2*q)" . ### https://w3id.org/tvbo/CoombesByrne/state_variables/r rdf:type owl:NamedIndividual , ; rdfs:label "r (CoombesByrne state variable)" ; "r" ; "Derivative(r, t)" ; "Delta/pi + 2*V*r - g*r" . ### https://w3id.org/tvbo/CoombesByrne2D/parameters/Delta rdf:type owl:NamedIndividual , ; "Half-width of heterogeneous noise distribution" ; "1.0"^^xsd:double ; rdfs:label "Delta (CoombesByrne2D parameter)" ; "Half-width of heterogeneous noise distribution" ; "Delta" . ### https://w3id.org/tvbo/CoombesByrne2D/parameters/eta rdf:type owl:NamedIndividual , ; "Constant parameter to scale the rate of feedback from the firing rate variable to itself" ; "2.0"^^xsd:double ; ; rdfs:label "eta (CoombesByrne2D parameter)" ; """Constant parameter to scale the rate of feedback from the firing rate variable to itself""" ; "eta" . ### https://w3id.org/tvbo/CoombesByrne2D/parameters/k rdf:type owl:NamedIndividual , ; "Local coupling strength" ; "1.0"^^xsd:double ; rdfs:label "k (CoombesByrne2D parameter)" ; "Local coupling strength" ; "k" . ### https://w3id.org/tvbo/CoombesByrne2D/parameters/v_syn rdf:type owl:NamedIndividual , ; "QIF membrane reversal potential" ; "-4.0"^^xsd:double ; ; rdfs:label "v_syn (CoombesByrne2D parameter)" ; "QIF membrane reversal potential" ; "v_syn" . ### https://w3id.org/tvbo/CoombesByrne2D/state_variables/V rdf:type owl:NamedIndividual , ; rdfs:label "V (CoombesByrne2D state variable)" ; "V" ; "Derivative(V, t)" ; "V**2 + c_pop0 + eta + pi*k*r*(-V + v_syn) - pi**2*r**2" . ### https://w3id.org/tvbo/CoombesByrne2D/state_variables/r rdf:type owl:NamedIndividual , ; rdfs:label "r (CoombesByrne2D state variable)" ; "r" ; "Derivative(r, t)" ; "Delta/pi + 2*V*r - pi*k*r**2" . ### https://w3id.org/tvbo/DumontGutkin/parameters/Delta_e rdf:type owl:NamedIndividual , ; "Half-width of heterogeneous noise distribution over excitatory population" ; "1.0"^^xsd:double ; , ; rdfs:label "Delta_e (DumontGutkin parameter)" ; "Half-width of heterogeneous noise distribution over excitatory population" ; "Delta_e" . ### https://w3id.org/tvbo/DumontGutkin/parameters/Delta_i rdf:type owl:NamedIndividual , ; "Half-width of heterogeneous noise distribution over inhibitory population" ; "1.0"^^xsd:double ; , , ; rdfs:label "Delta_i (DumontGutkin parameter)" ; "Half-width of heterogeneous noise distribution over inhibitory population" ; "Delta_i" . ### https://w3id.org/tvbo/DumontGutkin/parameters/Gamma rdf:type owl:NamedIndividual , ; "Ratio of excitatory VS inhibitory global couplings G_ie/G_ee " ; "5.0"^^xsd:double ; , ; rdfs:label "Gamma (DumontGutkin parameter)" ; "Ratio of excitatory VS inhibitory global couplings G_ie/G_ee ." ; "Gamma" . ### https://w3id.org/tvbo/DumontGutkin/parameters/I_e rdf:type owl:NamedIndividual , ; "External homogeneous current on excitatory population" ; "0.0"^^xsd:double ; ; rdfs:label "I_e (DumontGutkin parameter)" ; "External homogeneous current on excitatory population" ; "I_e" . ### https://w3id.org/tvbo/DumontGutkin/parameters/I_i rdf:type owl:NamedIndividual , ; "External current on inhibitory population" ; "0.0"^^xsd:double ; , ; rdfs:label "I_i (DumontGutkin parameter)" ; "External current on inhibitory population" ; "I_i" . ### https://w3id.org/tvbo/DumontGutkin/parameters/J_ee rdf:type owl:NamedIndividual , ; "Synaptic weight e-->e" ; "0.0"^^xsd:double ; , , ; rdfs:label "J_ee (DumontGutkin parameter)" ; "Synaptic weight e-->e" ; "J_ee" . ### https://w3id.org/tvbo/DumontGutkin/parameters/J_ei rdf:type owl:NamedIndividual , ; "Synaptic weight i-->e" ; "10.0"^^xsd:double ; , ; rdfs:label "J_ei (DumontGutkin parameter)" ; "Synaptic weight i-->e" ; "J_ei" . ### https://w3id.org/tvbo/DumontGutkin/parameters/J_ie rdf:type owl:NamedIndividual , ; "Synaptic weight e-->i" ; "0.0"^^xsd:double ; , ; rdfs:label "J_ie (DumontGutkin parameter)" ; "Synaptic weight e-->i" ; "J_ie" . ### https://w3id.org/tvbo/DumontGutkin/parameters/J_ii rdf:type owl:NamedIndividual , ; "Synaptic weight i-->i" ; "15.0"^^xsd:double ; , ; rdfs:label "J_ii (DumontGutkin parameter)" ; "Synaptic weight i-->i" ; "J_ii" . ### https://w3id.org/tvbo/DumontGutkin/parameters/eta_e rdf:type owl:NamedIndividual , ; "Mean heterogeneous current on excitatory population" ; "-5.0"^^xsd:double ; ; rdfs:label "eta_e (DumontGutkin parameter)" ; "Mean heterogeneous current on excitatory population" ; "eta_e" . ### https://w3id.org/tvbo/DumontGutkin/parameters/eta_i rdf:type owl:NamedIndividual , ; "Mean heterogeneous current on inhibitory population" ; "-5.0"^^xsd:double ; ; rdfs:label "eta_i (DumontGutkin parameter)" ; "Mean heterogeneous current on inhibitory population" ; "eta_i" . ### https://w3id.org/tvbo/DumontGutkin/parameters/tau_e rdf:type owl:NamedIndividual , ; "Characteristic time of excitatory population" ; "10.0"^^xsd:double ; , ; rdfs:label "tau_e (DumontGutkin parameter)" ; "Characteristic time of excitatory population" ; "tau_e" . ### https://w3id.org/tvbo/DumontGutkin/parameters/tau_i rdf:type owl:NamedIndividual , ; "Characteristic time of inhibitory population" ; "10.0"^^xsd:double ; , ; rdfs:label "tau_i (DumontGutkin parameter)" ; "Characteristic time of inhibitory population" ; "tau_i" . ### https://w3id.org/tvbo/DumontGutkin/parameters/tau_s rdf:type owl:NamedIndividual , ; "Synaptic time constant" ; "1.0"^^xsd:double ; ; rdfs:label "tau_s (DumontGutkin parameter)" ; "Synaptic time constant" ; "tau_s" . ### https://w3id.org/tvbo/DumontGutkin/state_variables/V_e rdf:type owl:NamedIndividual , ; rdfs:label "V_e (DumontGutkin state variable)" ; "V_e" ; "Derivative(V_e, t)" ; "(I_e + V_e**2 + eta_e - pi**2*r_e**2*tau_e**2 + s_ee*tau_e - s_ei*tau_e)/tau_e" . ### https://w3id.org/tvbo/DumontGutkin/state_variables/V_i rdf:type owl:NamedIndividual , ; rdfs:label "V_i (DumontGutkin state variable)" ; "V_i" ; "Derivative(V_i, t)" ; "(I_i + V_i**2 + eta_i - pi**2*r_i**2*tau_i**2 + s_ie*tau_i - s_ii*tau_i)/tau_i" . ### https://w3id.org/tvbo/DumontGutkin/state_variables/r_e rdf:type owl:NamedIndividual , ; rdfs:label "r_e (DumontGutkin state variable)" ; "r_e" ; "Derivative(r_e, t)" ; "(Delta_e/(pi*tau_e) + 2*V_e*r_e)/tau_e" . ### https://w3id.org/tvbo/DumontGutkin/state_variables/r_i rdf:type owl:NamedIndividual , ; rdfs:label "r_i (DumontGutkin state variable)" ; "r_i" ; "Derivative(r_i, t)" ; "(Delta_i/(pi*tau_i) + 2*V_i*r_i)/tau_i" . ### https://w3id.org/tvbo/DumontGutkin/state_variables/s_ee rdf:type owl:NamedIndividual , ; rdfs:label "s_ee (DumontGutkin state variable)" ; "s_ee" ; "Derivative(s_ee, t)" ; "(J_ee*r_e + c_pop0 - s_ee)/tau_s" . ### https://w3id.org/tvbo/DumontGutkin/state_variables/s_ei rdf:type owl:NamedIndividual , ; rdfs:label "s_ei (DumontGutkin state variable)" ; "s_ei" ; "Derivative(s_ei, t)" ; "(J_ei*r_i - s_ei)/tau_s" . ### https://w3id.org/tvbo/DumontGutkin/state_variables/s_ie rdf:type owl:NamedIndividual , ; rdfs:label "s_ie (DumontGutkin state variable)" ; "s_ie" ; "Derivative(s_ie, t)" ; "(Gamma*c_pop0 + J_ie*r_e - s_ie)/tau_s" . ### https://w3id.org/tvbo/DumontGutkin/state_variables/s_ii rdf:type owl:NamedIndividual , ; rdfs:label "s_ii (DumontGutkin state variable)" ; "s_ii" ; "Derivative(s_ii, t)" ; "(J_ii*r_i - s_ii)/tau_s" . ### https://w3id.org/tvbo/Epileptor2D/derived_variables/h rdf:type owl:NamedIndividual , ; rdfs:label "h (Epileptor2D derived variable)" ; "h" ; "h" ; "Piecewise((x0 + 3.0/(exp((-x1 - 1*0.5)/0.1) + 1.0), modification > 0), (zcond + 4*(-x0 + x1), True))" . ### https://w3id.org/tvbo/Epileptor2D/derived_variables/x1cond rdf:type owl:NamedIndividual , ; rdfs:label "x1cond (Epileptor2D derived variable)" ; "x1cond" ; "x1cond" ; "Piecewise((a*x1**2 + x1*(-b + d), x1 < 0), (d*x1 - slope - 0.6*(z - 4.0)**2, True))" . ### https://w3id.org/tvbo/Epileptor2D/derived_variables/zcond rdf:type owl:NamedIndividual , ; rdfs:label "zcond (Epileptor2D derived variable)" ; "zcond" ; "zcond" ; "Piecewise((-0.1*z**7, z < 0), (0, True))" . ### https://w3id.org/tvbo/Epileptor2D/parameters/Iext rdf:type owl:NamedIndividual , ; "External input current to the first state-variable x_E2D, in Epileptor2D (Proix et al" ; "3.1"^^xsd:double ; rdfs:label "Iext (Epileptor2D parameter)" ; "External input current to the first state-variable x_E2D, in Epileptor2D (Proix et al.,2014)." ; "Iext" . ### https://w3id.org/tvbo/Epileptor2D/parameters/Ks rdf:type owl:NamedIndividual , ; "Permittivity coupling on the slow permittivity state-variable z_E2D in Epileptor2D (Proix et al" ; "0.0"^^xsd:double ; rdfs:label "Ks (Epileptor2D parameter)" ; """Permittivity coupling on the slow permittivity state-variable z_E2D in Epileptor2D (Proix et al., 2014). The coupling quantifies the influence of neuronal fast discharges x_E2D on the local slow permittivity variable z_E2D.""" ; "Ks" . ### https://w3id.org/tvbo/Epileptor2D/parameters/Kvf rdf:type owl:NamedIndividual , ; "Coupling scaling on a very fast time scale" ; "0.0"^^xsd:double ; rdfs:label "Kvf (Epileptor2D parameter)" ; "Coupling scaling on a very fast time scale." ; "Kvf" . ### https://w3id.org/tvbo/Epileptor2D/parameters/a rdf:type owl:NamedIndividual , ; "Coefficient of the cubic term in the first state-variable x_E2D via the function f(x)_E2D, in Epileptor2D Proix et al" ; "1.0"^^xsd:double ; rdfs:label "a (Epileptor2D parameter)" ; "Coefficient of the cubic term in the first state-variable x_E2D via the function f(x)_E2D, in Epileptor2D Proix et al.,2014)." ; "a" . ### https://w3id.org/tvbo/Epileptor2D/parameters/b rdf:type owl:NamedIndividual , ; "Coefficient of the squared term in the first state-variable x_E2D via the function f_E2D, in Epileptor2D (Proix et al" ; "3.0"^^xsd:double ; rdfs:label "b (Epileptor2D parameter)" ; "Coefficient of the squared term in the first state-variable x_E2D via the function f_E2D, in Epileptor2D (Proix et al.,2014)." ; "b" . ### https://w3id.org/tvbo/Epileptor2D/parameters/c rdf:type owl:NamedIndividual , ; "Additive coefficient for the second state-variable x_{2}, called :math:`y_{0}` in Jirsa paper" ; "1.0"^^xsd:double ; rdfs:label "c (Epileptor2D parameter)" ; "Additive coefficient for the second state-variable x_{2}, called :math:`y_{0}` in Jirsa paper." ; "c" . ### https://w3id.org/tvbo/Epileptor2D/parameters/d rdf:type owl:NamedIndividual , ; "Coefficient of the squared term in the first state-variable x_E2D via the function f in Epileptor2D (Proix et al" ; "5.0"^^xsd:double ; rdfs:label "d (Epileptor2D parameter)" ; "Coefficient of the squared term in the first state-variable x_E2D via the function f in Epileptor2D (Proix et al.,2014)." ; "d" . ### https://w3id.org/tvbo/Epileptor2D/parameters/modification rdf:type owl:NamedIndividual , ; "When modification is True, the function h_E2D uses a nonlinear influence on z_E2D" ; "0.0"^^xsd:double ; rdfs:label "modification (Epileptor2D parameter)" ; "When modification is True, the function h_E2D uses a nonlinear influence on z_E2D. The default value is False, i.e., linear influence on z_E2D." ; "modification" . ### https://w3id.org/tvbo/Epileptor2D/parameters/r rdf:type owl:NamedIndividual , ; "Temporal scaling in the slow state-variable, \\ called :math:`1\\tau_{0}` in Jirsa paper (see class Epileptor)" ; "3.5E-4"^^xsd:double ; rdfs:label "r (Epileptor2D parameter)" ; """Temporal scaling in the slow state-variable, \\ called :math:`1\\tau_{0}` in Jirsa paper (see class Epileptor).""" ; "r" . ### https://w3id.org/tvbo/Epileptor2D/parameters/slope rdf:type owl:NamedIndividual , ; "Linear coefficient in the first state-variable x_E2D via the function f_E2D, in Epileptor2D (Proix et al" ; "0.0"^^xsd:double ; rdfs:label "slope (Epileptor2D parameter)" ; "Linear coefficient in the first state-variable x_E2D via the function f_E2D, in Epileptor2D (Proix et al.,2014)." ; "slope" . ### https://w3id.org/tvbo/Epileptor2D/parameters/tt rdf:type owl:NamedIndividual , ; "Characteristic time scale of the whole-system Epileptor2D" ; "1.0"^^xsd:double ; rdfs:label "tt (Epileptor2D parameter)" ; "Characteristic time scale of the whole-system Epileptor2D." ; "tt" . ### https://w3id.org/tvbo/Epileptor2D/parameters/x0 rdf:type owl:NamedIndividual , ; "Degree of excitability or epileptogenicity in Epileptor2D (Proix et al" ; "-1.6"^^xsd:double ; ; rdfs:label "x0 (Epileptor2D parameter)" ; """Degree of excitability or epileptogenicity in Epileptor2D (Proix et al.,2014). If x0 is greater than a critical value, x0,critic = −2.05 (i.e., in the supercritical regime), the system can trigger seizures autonomously; otherwise it is in its equilibrium state (i.e., in the subcritical regime). Note: - If modification_E2D: if x0 is smaller than a critical value, x0,critic = 2.91, can trigger seizures autonomously; otherwise it is in its equilibrium state (Proix et al., 2014).""" ; "x0" . ### https://w3id.org/tvbo/Epileptor2D/state_variables/x1 rdf:type owl:NamedIndividual , ; "First state-variable in the Epileptor2D (Proix et al" ; rdfs:label "x1 (Epileptor2D state variable)" ; "x1" ; "Derivative(x1, t)" ; "tt*(Iext + Kvf*c_pop0 + c + local_coupling*x1 - x1*x1cond - z)" . ### https://w3id.org/tvbo/Epileptor2D/state_variables/z rdf:type owl:NamedIndividual , ; "Slow permittivity state-variable of the Epileptor2D (Proix et al" ; rdfs:label "z (Epileptor2D state variable)" ; "z" ; "Derivative(z, t)" ; "r*tt*(Ks*c_pop0 + h - z)" . ### https://w3id.org/tvbo/Epileptor3DStefanescuMcDonald/parameters/N rdf:type owl:NamedIndividual , ; "1.0"^^xsd:double ; ; rdfs:label "N (Epileptor3DStefanescuMcDonald parameter)" ; "Effective population size / scaling of the resting-state regulation term." ; "N" . ### https://w3id.org/tvbo/Epileptor3DStefanescuMcDonald/parameters/tau_z rdf:type owl:NamedIndividual , ; "2857.0"^^xsd:double ; rdfs:label "tau_z (Epileptor3DStefanescuMcDonald parameter)" ; "Slow timescale for the z permittivity variable." ; "tau_z" ; "ms" . ### https://w3id.org/tvbo/Epileptor3DStefanescuMcDonald/parameters/x_0 rdf:type owl:NamedIndividual , ; "-1.6"^^xsd:double ; rdfs:label "x_0 (Epileptor3DStefanescuMcDonald parameter)" ; "Excitability parameter (Epileptor convention)." ; "x_0" . ### https://w3id.org/tvbo/Epileptor3DStefanescuMcDonald/state_variables/x1 rdf:type owl:NamedIndividual , ; "Fast excitable variable (placeholder Epileptor-like dynamics)." ; rdfs:label "x1 (Epileptor3DStefanescuMcDonald state variable)" ; "x1" ; "Derivative(x1, t)" ; "N*(x1 - x1**3/3 - z + c_pop0)" . ### https://w3id.org/tvbo/Epileptor3DStefanescuMcDonald/state_variables/z rdf:type owl:NamedIndividual , ; "Slow permittivity / excitability variable." ; rdfs:label "z (Epileptor3DStefanescuMcDonald state variable)" ; "z" ; "Derivative(z, t)" ; "(4*(x1 - x_0) - z)/tau_z" . ### https://w3id.org/tvbo/Epileptor5D/derived_variables/h rdf:type owl:NamedIndividual , ; rdfs:label "h (Epileptor5D derived variable)" ; "h" ; "h" ; "Piecewise((x0 + 3/(exp((-x1 - 1*0.5)/0.1) + 1), modification > 0), (zcond + 4*(-x0 + x1), True))" . ### https://w3id.org/tvbo/Epileptor5D/derived_variables/x1cond rdf:type owl:NamedIndividual , ; rdfs:label "x1cond (Epileptor5D derived variable)" ; "x1cond" ; "x1cond" ; "Piecewise(((-a)*x1**2 + b*x1, x1 < 0), (slope - x2 + 0.6*(z - 4.0)**2, True))" . ### https://w3id.org/tvbo/Epileptor5D/derived_variables/y2cond rdf:type owl:NamedIndividual , ; rdfs:label "y2cond (Epileptor5D derived variable)" ; "y2cond" ; "y2cond" ; "Piecewise((0.0, x2 < -0.25), (aa*(x2 + 0.25), True))" . ### https://w3id.org/tvbo/Epileptor5D/derived_variables/zcond rdf:type owl:NamedIndividual , ; rdfs:label "zcond (Epileptor5D derived variable)" ; "zcond" ; "zcond" ; "Piecewise((-0.1*z**7, z < 0), (0.0, True))" . ### https://w3id.org/tvbo/Epileptor5D/parameters/Iext rdf:type owl:NamedIndividual , ; "External input current to the first sub-population (x1_E5D, y1_E5D) via the state-variable x1_E5D, in Epileptor5D (Jirsa et al" ; "3.1"^^xsd:double ; rdfs:label "Iext (Epileptor5D parameter)" ; "External input current to the first sub-population (x1_E5D, y1_E5D) via the state-variable x1_E5D, in Epileptor5D (Jirsa et al.,2014)." ; "Iext" . ### https://w3id.org/tvbo/Epileptor5D/parameters/Iext2 rdf:type owl:NamedIndividual , ; "External input current to the second population" ; "0.45"^^xsd:double ; rdfs:label "Iext2 (Epileptor5D parameter)" ; "External input current to the second population" ; "Iext2" . ### https://w3id.org/tvbo/Epileptor5D/parameters/Kf rdf:type owl:NamedIndividual , ; "Correspond to the coupling scaling on a fast time scale" ; "0.0"^^xsd:double ; rdfs:label "Kf (Epileptor5D parameter)" ; "Correspond to the coupling scaling on a fast time scale." ; "Kf" . ### https://w3id.org/tvbo/Epileptor5D/parameters/Ks rdf:type owl:NamedIndividual , ; "Permittivity coupling on the slow permittivity state-variable z_E5D in Epileptor5D (Proix et al" ; "0.0"^^xsd:double ; rdfs:label "Ks (Epileptor5D parameter)" ; """Permittivity coupling on the slow permittivity state-variable z_E5D in Epileptor5D (Proix et al., 2014). The coupling quantifies the influence of neuronal fast discharges x1_E5D on the local slow permittivity variable z_E5D.""" ; "Ks" . ### https://w3id.org/tvbo/Epileptor5D/parameters/Kvf rdf:type owl:NamedIndividual , ; "Coupling scaling on a very fast time scale" ; "0.0"^^xsd:double ; rdfs:label "Kvf (Epileptor5D parameter)" ; "Coupling scaling on a very fast time scale." ; "Kvf" . ### https://w3id.org/tvbo/Epileptor5D/parameters/a rdf:type owl:NamedIndividual , ; "Coefficient of the cubic term in the first state variable" ; "1.0"^^xsd:double ; rdfs:label "a (Epileptor5D parameter)" ; "Coefficient of the cubic term in the first state variable" ; "a" . ### https://w3id.org/tvbo/Epileptor5D/parameters/aa rdf:type owl:NamedIndividual , ; "Linear coefficient in fifth state variable" ; "6.0"^^xsd:double ; rdfs:label "aa (Epileptor5D parameter)" ; "Linear coefficient in fifth state variable" ; "aa" . ### https://w3id.org/tvbo/Epileptor5D/parameters/b rdf:type owl:NamedIndividual , ; "Coefficient of the squared term in the first state variabel" ; "3.0"^^xsd:double ; rdfs:label "b (Epileptor5D parameter)" ; "Coefficient of the squared term in the first state variabel" ; "b" . ### https://w3id.org/tvbo/Epileptor5D/parameters/bb rdf:type owl:NamedIndividual , ; "Linear coefficient of lowpass excitatory coupling in fourth state variable" ; "2.0"^^xsd:double ; rdfs:label "bb (Epileptor5D parameter)" ; "Linear coefficient of lowpass excitatory coupling in fourth state variable" ; "bb" . ### https://w3id.org/tvbo/Epileptor5D/parameters/c rdf:type owl:NamedIndividual , ; "Additive coefficient for the second state variable, called :math:`y_{0}` in Jirsa paper" ; "1.0"^^xsd:double ; rdfs:label "c (Epileptor5D parameter)" ; "Additive coefficient for the second state variable, called :math:`y_{0}` in Jirsa paper" ; "c" . ### https://w3id.org/tvbo/Epileptor5D/parameters/d rdf:type owl:NamedIndividual , ; "Coefficient of the squared term in the derivative of the second state-variable y1_E5D in Epileptor5D (Jirsa et al" ; "5.0"^^xsd:double ; rdfs:label "d (Epileptor5D parameter)" ; "Coefficient of the squared term in the derivative of the second state-variable y1_E5D in Epileptor5D (Jirsa et al.,2014)." ; "d" . ### https://w3id.org/tvbo/Epileptor5D/parameters/modification rdf:type owl:NamedIndividual , ; "When modification is True, the function h_E5D uses a nonlinear influence on z_E5D" ; "0.0"^^xsd:double ; rdfs:label "modification (Epileptor5D parameter)" ; "When modification is True, the function h_E5D uses a nonlinear influence on z_E5D. The default value is False, i.e., linear influence on z_E5D." ; "modification" . ### https://w3id.org/tvbo/Epileptor5D/parameters/r rdf:type owl:NamedIndividual , ; "Temporal scaling in the third state variable, called :math:`1/\\tau_{0}` in Jirsa paper" ; "3.5E-4"^^xsd:double ; rdfs:label "r (Epileptor5D parameter)" ; "Temporal scaling in the third state variable, called :math:`1/\\tau_{0}` in Jirsa paper" ; "r" . ### https://w3id.org/tvbo/Epileptor5D/parameters/s rdf:type owl:NamedIndividual , ; "Linear coefficient in the slow permittivity state-variable z_E5D in Epileptor5D (Jirsa et al" ; "4.0"^^xsd:double ; rdfs:label "s (Epileptor5D parameter)" ; "Linear coefficient in the slow permittivity state-variable z_E5D in Epileptor5D (Jirsa et al.,2014)." ; "s" . ### https://w3id.org/tvbo/Epileptor5D/parameters/slope rdf:type owl:NamedIndividual , ; "Linear coefficient in the first state variable" ; "0.0"^^xsd:double ; rdfs:label "slope (Epileptor5D parameter)" ; "Linear coefficient in the first state variable" ; "slope" . ### https://w3id.org/tvbo/Epileptor5D/parameters/tau rdf:type owl:NamedIndividual , ; "Temporal scaling coefficient in fifth state variable" ; "10.0"^^xsd:double ; rdfs:label "tau (Epileptor5D parameter)" ; "Temporal scaling coefficient in fifth state variable" ; "tau" . ### https://w3id.org/tvbo/Epileptor5D/parameters/tt rdf:type owl:NamedIndividual , ; "Characteristic time scale of the whole-system Epileptor5D" ; "1.0"^^xsd:double ; rdfs:label "tt (Epileptor5D parameter)" ; "Characteristic time scale of the whole-system Epileptor5D." ; "tt" . ### https://w3id.org/tvbo/Epileptor5D/parameters/x0 rdf:type owl:NamedIndividual , ; "Epileptogenicity Parameter" ; "-1.6"^^xsd:double ; ; rdfs:label "x0 (Epileptor5D parameter)" ; """Epileptogenicity Parameter. Degree of excitability or epileptogenicity in Epileptor5D (Jirsa et al.,2014). If x0 is greater than a critical value, x0,critic = −2.05, the system can trigger seizures autonomously; otherwise it is in its equilibrium state. Note: - If modification_E5D: if x0 is smaller than a critical value, x0,critic = 2.91, can trigger seizures autonomously; otherwise it is in its equilibrium state (Proix et al., 2014).""" ; "x0" . ### https://w3id.org/tvbo/Epileptor5D/state_variables/g rdf:type owl:NamedIndividual , ; "g_E5D is a low-pass filtered excitatory coupling function from sub-population (x1_E5D, y1_E5D) to (x2_E5D, y2_E5D) in Epileptor5D (Jirsa et al" ; rdfs:label "g (Epileptor5D state variable)" ; "g" ; "Derivative(g, t)" ; "tt*(-0.01*g + 0.001*x1)" . ### https://w3id.org/tvbo/Epileptor5D/state_variables/x1 rdf:type owl:NamedIndividual , ; "First state-variable of the first Epileptor5D population (Jirsa et al" ; rdfs:label "x1 (Epileptor5D state variable)" ; "x1" ; "Derivative(x1, t)" ; "tt*(Iext + Kvf*c_pop0 + local_coupling*x1 + x1*x1cond + y1 - z)" . ### https://w3id.org/tvbo/Epileptor5D/state_variables/x2 rdf:type owl:NamedIndividual , ; "First state-variable of the second Epileptor5D sub-population (Jirsa et al" ; rdfs:label "x2 (Epileptor5D state variable)" ; "x2" ; "Derivative(x2, t)" ; "tt*(Iext2 + Kf*c_pop1 + bb*g - x2**3 + x2 - y2 - 0.3*z + 1.05)" . ### https://w3id.org/tvbo/Epileptor5D/state_variables/y1 rdf:type owl:NamedIndividual , ; "Second state-variable of the first Epileptor5D sub-population (Jirsa et al" ; rdfs:label "y1 (Epileptor5D state variable)" ; "y1" ; "Derivative(y1, t)" ; "tt*(c - d*x1**2 - y1)" . ### https://w3id.org/tvbo/Epileptor5D/state_variables/y2 rdf:type owl:NamedIndividual , ; "Second state-variable of the second Epileptor5D population (Jirsa et al" ; rdfs:label "y2 (Epileptor5D state variable)" ; "y2" ; "Derivative(y2, t)" ; "tt*(-y2 + y2cond)/tau" . ### https://w3id.org/tvbo/Epileptor5D/state_variables/z rdf:type owl:NamedIndividual , ; "Slow permittivity state-variable of the Epileptor5D (Jirsa et al" ; rdfs:label "z (Epileptor5D state variable)" ; "z" ; "Derivative(z, t)" ; "r*tt*(Ks*c_pop0 + h - z)" . ### https://w3id.org/tvbo/EpileptorRestingState/derived_variables/lc_1 rdf:type owl:NamedIndividual , ; rdfs:label "lc_1 (EpileptorRestingState derived variable)" ; "lc_1" ; "lc_1" ; "local_coupling*x_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/derived_variables/output rdf:type owl:NamedIndividual , ; rdfs:label "output (EpileptorRestingState derived variable)" ; "output" ; "output" ; "p*(-x1 + x2) + x_rs*(1 - p)" . ### https://w3id.org/tvbo/EpileptorRestingState/derived_variables/x1cond rdf:type owl:NamedIndividual , ; rdfs:label "x1cond (EpileptorRestingState derived variable)" ; "x1cond" ; "x1cond" ; "Piecewise(((-a)*x1**2 + b*x1, x1 < 0), (slope - x2 + 0.6*(z - 4.0)**2, True))" . ### https://w3id.org/tvbo/EpileptorRestingState/derived_variables/y2cond rdf:type owl:NamedIndividual , ; rdfs:label "y2cond (EpileptorRestingState derived variable)" ; "y2cond" ; "y2cond" ; "Piecewise((0.0, x2 < -0.25), (aa*(x2 + 0.25), True))" . ### https://w3id.org/tvbo/EpileptorRestingState/derived_variables/zcond rdf:type owl:NamedIndividual , ; rdfs:label "zcond (EpileptorRestingState derived variable)" ; "zcond" ; "zcond" ; "Piecewise((-0.1*z**7, z < 0), (0.0, True))" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/I_rs rdf:type owl:NamedIndividual , ; "External input current to the third population (x_rs, y_rs)" ; "0.0"^^xsd:double ; rdfs:label "I_rs (EpileptorRestingState parameter)" ; "External input current to the third population (x_rs, y_rs)." ; "I_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/Iext rdf:type owl:NamedIndividual , ; "External input current to the first population (x1, y1)" ; "3.1"^^xsd:double ; rdfs:label "Iext (EpileptorRestingState parameter)" ; "External input current to the first population (x1, y1)." ; "Iext" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/Iext2 rdf:type owl:NamedIndividual , ; "External input current to the second population (x2, y2)" ; "0.45"^^xsd:double ; rdfs:label "Iext2 (EpileptorRestingState parameter)" ; "External input current to the second population (x2, y2)." ; "Iext2" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/K_rs rdf:type owl:NamedIndividual , ; "Coupling scaling on a fast time scale" ; "1.0"^^xsd:double ; rdfs:label "K_rs (EpileptorRestingState parameter)" ; "Coupling scaling on a fast time scale." ; "K_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/Kf rdf:type owl:NamedIndividual , ; "Coupling scaling on a fast time scale" ; "0.0"^^xsd:double ; rdfs:label "Kf (EpileptorRestingState parameter)" ; "Coupling scaling on a fast time scale." ; "Kf" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/Ks rdf:type owl:NamedIndividual , ; "Permittivity coupling, that is from the very fast time scale toward the slow time scale" ; "0.0"^^xsd:double ; rdfs:label "Ks (EpileptorRestingState parameter)" ; "Permittivity coupling, that is from the very fast time scale toward the slow time scale." ; "Ks" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/Kvf rdf:type owl:NamedIndividual , ; "Coupling scaling on a very fast time scale" ; "0.0"^^xsd:double ; rdfs:label "Kvf (EpileptorRestingState parameter)" ; "Coupling scaling on a very fast time scale." ; "Kvf" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/a rdf:type owl:NamedIndividual , ; "Coefficient of the cubic term in the first state-variable x1" ; "1.0"^^xsd:double ; rdfs:label "a (EpileptorRestingState parameter)" ; "Coefficient of the cubic term in the first state-variable x1." ; "a" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/a_rs rdf:type owl:NamedIndividual , ; "Vertical shift of the configurable nullcline in the state-variable y_rs" ; "-2.0"^^xsd:double ; rdfs:label "a_rs (EpileptorRestingState parameter)" ; "Vertical shift of the configurable nullcline in the state-variable y_rs." ; "a_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/aa rdf:type owl:NamedIndividual , ; "Linear coefficient in the fifth state-variable y2" ; "6.0"^^xsd:double ; rdfs:label "aa (EpileptorRestingState parameter)" ; "Linear coefficient in the fifth state-variable y2." ; "aa" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/alpha_rs rdf:type owl:NamedIndividual , ; "Constant parameter to scale the rate of feedback from the slow variable y_rs to the fast variable x_rs" ; "1.0"^^xsd:double ; rdfs:label "alpha_rs (EpileptorRestingState parameter)" ; "Constant parameter to scale the rate of feedback from the slow variable y_rs to the fast variable x_rs." ; "alpha_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/b rdf:type owl:NamedIndividual , ; "Coefficient of the squared term in the first state-variable x1" ; "3.0"^^xsd:double ; rdfs:label "b (EpileptorRestingState parameter)" ; "Coefficient of the squared term in the first state-variable x1." ; "b" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/b_rs rdf:type owl:NamedIndividual , ; "Linear coefficient of the state-variable y_rs" ; "-10.0"^^xsd:double ; rdfs:label "b_rs (EpileptorRestingState parameter)" ; "Linear coefficient of the state-variable y_rs." ; "b_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/bb rdf:type owl:NamedIndividual , ; "Linear coefficient of lowpass excitatory coupling in the fourth state-variable x2" ; "2.0"^^xsd:double ; rdfs:label "bb (EpileptorRestingState parameter)" ; "Linear coefficient of lowpass excitatory coupling in the fourth state-variable x2." ; "bb" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/beta_rs rdf:type owl:NamedIndividual , ; "Constant parameter to scale the rate of feedback from the slow variable y_rs to itself" ; "1.0"^^xsd:double ; rdfs:label "beta_rs (EpileptorRestingState parameter)" ; "Constant parameter to scale the rate of feedback from the slow variable y_rs to itself." ; "beta_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/c rdf:type owl:NamedIndividual , ; "Additive coefficient for the second state-variable y1, called :math:'y_{0}' in Jirsa et al" ; "1.0"^^xsd:double ; rdfs:label "c (EpileptorRestingState parameter)" ; "Additive coefficient for the second state-variable y1, called :math:'y_{0}' in Jirsa et al. (2014)." ; "c" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/d rdf:type owl:NamedIndividual , ; "Coefficient of the squared term in the second state-variable y1" ; "5.0"^^xsd:double ; rdfs:label "d (EpileptorRestingState parameter)" ; "Coefficient of the squared term in the second state-variable y1." ; "d" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/d_rs rdf:type owl:NamedIndividual , ; "Temporal scaling of the whole third system (x_rs, y_rs)" ; "0.02"^^xsd:double ; rdfs:label "d_rs (EpileptorRestingState parameter)" ; "Temporal scaling of the whole third system (x_rs, y_rs)." ; "d_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/e_rs rdf:type owl:NamedIndividual , ; "Coefficient of the squared term in the sixth state-variable x_rs" ; "3.0"^^xsd:double ; rdfs:label "e_rs (EpileptorRestingState parameter)" ; "Coefficient of the squared term in the sixth state-variable x_rs." ; "e_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/f_rs rdf:type owl:NamedIndividual , ; "Coefficient of the cubic term in the sixth state-variable x_rs" ; "1.0"^^xsd:double ; rdfs:label "f_rs (EpileptorRestingState parameter)" ; "Coefficient of the cubic term in the sixth state-variable x_rs." ; "f_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/gamma_rs rdf:type owl:NamedIndividual , ; "Constant parameter to reproduce FHN dynamics where excitatory input currents are negative" ; "1.0"^^xsd:double ; rdfs:label "gamma_rs (EpileptorRestingState parameter)" ; "Constant parameter to reproduce FHN dynamics where excitatory input currents are negative. Note: It scales both I_rs and the long-range coupling term." ; "gamma_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/p rdf:type owl:NamedIndividual , ; "Linear coefficient" ; "0.0"^^xsd:double ; rdfs:label "p (EpileptorRestingState parameter)" ; "Linear coefficient." ; "p" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/r rdf:type owl:NamedIndividual , ; "Temporal scaling in the third state-variable z, called :math:'1/ au_{0}' in Jirsa et al" ; "3.5E-4"^^xsd:double ; rdfs:label "r (EpileptorRestingState parameter)" ; "Temporal scaling in the third state-variable z, called :math:'1/ au_{0}' in Jirsa et al. (2014)." ; "r" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/slope rdf:type owl:NamedIndividual , ; "Linear coefficient in the first state-variable x1" ; "0.0"^^xsd:double ; rdfs:label "slope (EpileptorRestingState parameter)" ; "Linear coefficient in the first state-variable x1." ; "slope" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/tau rdf:type owl:NamedIndividual , ; "Temporal scaling coefficient in the fifth state-variable y2" ; "10.0"^^xsd:double ; rdfs:label "tau (EpileptorRestingState parameter)" ; "Temporal scaling coefficient in the fifth state-variable y2." ; "tau" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/tau_rs rdf:type owl:NamedIndividual , ; "Temporal scaling coefficient in the third population (x_rs, y_rs)" ; "1.0"^^xsd:double ; rdfs:label "tau_rs (EpileptorRestingState parameter)" ; "Temporal scaling coefficient in the third population (x_rs, y_rs)." ; "tau_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/tt rdf:type owl:NamedIndividual , ; "Time scaling of the Epileptor" ; "1.0"^^xsd:double ; rdfs:label "tt (EpileptorRestingState parameter)" ; "Time scaling of the Epileptor." ; "tt" . ### https://w3id.org/tvbo/EpileptorRestingState/parameters/x0 rdf:type owl:NamedIndividual , ; "Epileptogenicity parameter" ; "-1.6"^^xsd:double ; rdfs:label "x0 (EpileptorRestingState parameter)" ; "Epileptogenicity parameter." ; "x0" . ### https://w3id.org/tvbo/EpileptorRestingState/state_variables/g rdf:type owl:NamedIndividual , ; rdfs:label "g (EpileptorRestingState state variable)" ; "g" ; "Derivative(g, t)" ; "tt*(-0.01*g + 0.001*x1)" . ### https://w3id.org/tvbo/EpileptorRestingState/state_variables/x1 rdf:type owl:NamedIndividual , ; rdfs:label "x1 (EpileptorRestingState state variable)" ; "x1" ; "Derivative(x1, t)" ; "tt*(Iext + Kvf*c_pop0 + local_coupling*x1 + x1*x1cond + y1 - z)" . ### https://w3id.org/tvbo/EpileptorRestingState/state_variables/x2 rdf:type owl:NamedIndividual , ; rdfs:label "x2 (EpileptorRestingState state variable)" ; "x2" ; "Derivative(x2, t)" ; "tt*(Iext2 + Kf*c_pop1 + bb*g - x2**3 + x2 - y2 - 0.3*z + 1.05)" . ### https://w3id.org/tvbo/EpileptorRestingState/state_variables/x_rs rdf:type owl:NamedIndividual , ; rdfs:label "x_rs (EpileptorRestingState state variable)" ; "x_rs" ; "Derivative(x_rs, t)" ; "d_rs*tau_rs*(I_rs*gamma_rs + K_rs*c_pop2*gamma_rs + alpha_rs*y_rs + e_rs*x_rs**2 - f_rs*x_rs**3 + lc_1)" . ### https://w3id.org/tvbo/EpileptorRestingState/state_variables/y1 rdf:type owl:NamedIndividual , ; rdfs:label "y1 (EpileptorRestingState state variable)" ; "y1" ; "Derivative(y1, t)" ; "tt*(c - d*x1**2 - y1)" . ### https://w3id.org/tvbo/EpileptorRestingState/state_variables/y2 rdf:type owl:NamedIndividual , ; rdfs:label "y2 (EpileptorRestingState state variable)" ; "y2" ; "Derivative(y2, t)" ; "tt*(-y2 + y2cond)/tau" . ### https://w3id.org/tvbo/EpileptorRestingState/state_variables/y_rs rdf:type owl:NamedIndividual , ; rdfs:label "y_rs (EpileptorRestingState state variable)" ; "y_rs" ; "Derivative(y_rs, t)" ; "d_rs*(a_rs + b_rs*x_rs - beta_rs*y_rs)/tau_rs" . ### https://w3id.org/tvbo/EpileptorRestingState/state_variables/z rdf:type owl:NamedIndividual , ; rdfs:label "z (EpileptorRestingState state variable)" ; "z" ; "Derivative(z, t)" ; "r*tt*(Ks*c_pop0 - 4*x0 + 4*x1 - z + zcond)" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/parameters/Delta rdf:type owl:NamedIndividual , ; "Half-width of heterogeneous noise distribution" ; "2.0"^^xsd:double ; rdfs:label "Delta (GastSchmidtKnosche_SD parameter)" ; "Half-width of heterogeneous noise distribution" ; "Delta" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/parameters/I rdf:type owl:NamedIndividual , ; "External homogeneous current" ; "0.0"^^xsd:double ; rdfs:label "I (GastSchmidtKnosche_SD parameter)" ; "External homogeneous current" ; "I" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/parameters/J rdf:type owl:NamedIndividual , ; "Synaptic weight" ; "21.2132"^^xsd:double ; ; rdfs:label "J (GastSchmidtKnosche_SD parameter)" ; "Synaptic weight" ; "J" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/parameters/alpha rdf:type owl:NamedIndividual , ; "adaptation rate" ; "0.5"^^xsd:double ; rdfs:label "alpha (GastSchmidtKnosche_SD parameter)" ; "adaptation rate" ; "alpha" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/parameters/cr rdf:type owl:NamedIndividual , ; "It is the weight on Coupling through variable r" ; "1.0"^^xsd:double ; rdfs:label "cr (GastSchmidtKnosche_SD parameter)" ; "It is the weight on Coupling through variable r." ; "cr" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/parameters/cv rdf:type owl:NamedIndividual , ; "It is the weight on Coupling through variable V" ; "0.0"^^xsd:double ; rdfs:label "cv (GastSchmidtKnosche_SD parameter)" ; "It is the weight on Coupling through variable V." ; "cv" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/parameters/eta rdf:type owl:NamedIndividual , ; "Mean of heterogeneous noise distribution" ; "-6.0"^^xsd:double ; rdfs:label "eta (GastSchmidtKnosche_SD parameter)" ; "Mean of heterogeneous noise distribution" ; "eta" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/parameters/tau rdf:type owl:NamedIndividual , ; "Characteristic time" ; "1.0"^^xsd:double ; rdfs:label "tau (GastSchmidtKnosche_SD parameter)" ; "Characteristic time" ; "tau" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/parameters/tau_A rdf:type owl:NamedIndividual , ; "Adaptation time scale" ; "10.0"^^xsd:double ; rdfs:label "tau_A (GastSchmidtKnosche_SD parameter)" ; "Adaptation time scale" ; "tau_A" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/state_variables/A rdf:type owl:NamedIndividual , ; rdfs:label "A (GastSchmidtKnosche_SD state variable)" ; "A" ; "Derivative(A, t)" ; "B/tau_A" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/state_variables/B rdf:type owl:NamedIndividual , ; rdfs:label "B (GastSchmidtKnosche_SD state variable)" ; "B" ; "Derivative(B, t)" ; "(-A - 2*B + alpha*r)/tau_A" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/state_variables/V rdf:type owl:NamedIndividual , ; rdfs:label "V (GastSchmidtKnosche_SD state variable)" ; "V" ; "Derivative(V, t)" ; "(I + J*r*tau*(1 - A) + V**2 + c_pop0*cr + c_pop1*cv + eta - pi**2*r**2*tau**2)/tau" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SD/state_variables/r rdf:type owl:NamedIndividual , ; rdfs:label "r (GastSchmidtKnosche_SD state variable)" ; "r" ; "Derivative(r, t)" ; "(Delta/(pi*tau) + 2*V*r)/tau" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/parameters/Delta rdf:type owl:NamedIndividual , ; "Half-width of heterogeneous noise distribution" ; "2.0"^^xsd:double ; rdfs:label "Delta (GastSchmidtKnosche_SF parameter)" ; "Half-width of heterogeneous noise distribution" ; "Delta" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/parameters/I rdf:type owl:NamedIndividual , ; "External homogeneous current" ; "0.0"^^xsd:double ; rdfs:label "I (GastSchmidtKnosche_SF parameter)" ; "External homogeneous current" ; "I" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/parameters/J rdf:type owl:NamedIndividual , ; "Synaptic weight" ; "21.2132"^^xsd:double ; ; rdfs:label "J (GastSchmidtKnosche_SF parameter)" ; "Synaptic weight" ; "J" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/parameters/alpha rdf:type owl:NamedIndividual , ; "adaptation rate" ; "10.0"^^xsd:double ; ; rdfs:label "alpha (GastSchmidtKnosche_SF parameter)" ; "adaptation rate" ; "alpha" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/parameters/cr rdf:type owl:NamedIndividual , ; "It is the weight on Coupling through variable r" ; "1.0"^^xsd:double ; rdfs:label "cr (GastSchmidtKnosche_SF parameter)" ; "It is the weight on Coupling through variable r." ; "cr" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/parameters/cv rdf:type owl:NamedIndividual , ; "It is the weight on Coupling through variable V" ; "0.0"^^xsd:double ; rdfs:label "cv (GastSchmidtKnosche_SF parameter)" ; "It is the weight on Coupling through variable V." ; "cv" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/parameters/eta rdf:type owl:NamedIndividual , ; "Mean of heterogeneous noise distribution" ; "1.0"^^xsd:double ; rdfs:label "eta (GastSchmidtKnosche_SF parameter)" ; "Mean of heterogeneous noise distribution" ; "eta" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/parameters/tau rdf:type owl:NamedIndividual , ; "Characteristic time" ; "1.0"^^xsd:double ; rdfs:label "tau (GastSchmidtKnosche_SF parameter)" ; "Characteristic time" ; "tau" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/parameters/tau_A rdf:type owl:NamedIndividual , ; "Adaptation time scale" ; "10.0"^^xsd:double ; rdfs:label "tau_A (GastSchmidtKnosche_SF parameter)" ; "Adaptation time scale" ; "tau_A" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/state_variables/A rdf:type owl:NamedIndividual , ; rdfs:label "A (GastSchmidtKnosche_SF state variable)" ; "A" ; "Derivative(A, t)" ; "B/tau_A" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/state_variables/B rdf:type owl:NamedIndividual , ; rdfs:label "B (GastSchmidtKnosche_SF state variable)" ; "B" ; "Derivative(B, t)" ; "(-A - 2*B + alpha*r)/tau_A" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/state_variables/V rdf:type owl:NamedIndividual , ; rdfs:label "V (GastSchmidtKnosche_SF state variable)" ; "V" ; "Derivative(V, t)" ; "(-A + I + J*r*tau + V**2 + c_pop0*cr + c_pop1*cv + eta - pi**2*r**2*tau**2)/tau" . ### https://w3id.org/tvbo/GastSchmidtKnosche_SF/state_variables/r rdf:type owl:NamedIndividual , ; rdfs:label "r (GastSchmidtKnosche_SF state variable)" ; "r" ; "Derivative(r, t)" ; "(Delta/(pi*tau) + 2*V*r)/tau" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/I rdf:type owl:NamedIndividual , ; "Baseline shift of the cubic nullcline" ; "0.0"^^xsd:double ; ; rdfs:label "I (Generic2dOscillator parameter)" ; "Baseline shift of the cubic nullcline" ; "I" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/a rdf:type owl:NamedIndividual , ; "Vertical shift of the configurable nullcline" ; "-2.0"^^xsd:double ; rdfs:label "a (Generic2dOscillator parameter)" ; "Vertical shift of the configurable nullcline" ; "a" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/alpha rdf:type owl:NamedIndividual , ; "Constant parameter to scale the rate of feedback from the slow variable to the fast variable." ; "1.0"^^xsd:double ; rdfs:label "alpha (Generic2dOscillator parameter)" ; "alpha_G2D is the coefficient of the linear feedback coupling term of the state-variable W_G2D to the first state-equation Vdot_G2D. Constant parameter to scale the rate of feedback from the slow variable to the fast variable." ; "alpha" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/b rdf:type owl:NamedIndividual , ; "Linear slope of the configurable nullcline" ; "-10.0"^^xsd:double ; , ; rdfs:label "b (Generic2dOscillator parameter)" ; "Linear slope of the configurable nullcline" ; "b" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/beta rdf:type owl:NamedIndividual , ; "Constant parameter to scale the rate of feedback from the slow variable to itself" ; "1.0"^^xsd:double ; rdfs:label "beta (Generic2dOscillator parameter)" ; """Constant parameter to scale the rate of feedback from the slow variable to itself""" ; "beta" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/c rdf:type owl:NamedIndividual , ; "Parabolic term of the configurable nullcline" ; "0.0"^^xsd:double ; rdfs:label "c (Generic2dOscillator parameter)" ; "Parabolic term of the configurable nullcline" ; "c" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/d rdf:type owl:NamedIndividual , ; "Temporal scale factor" ; "0.02"^^xsd:double ; rdfs:label "d (Generic2dOscillator parameter)" ; """Temporal scale factor. Warning: do not use it unless you know what you are doing and know about time tides.""" ; "d" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/e rdf:type owl:NamedIndividual , ; "Coefficient of the quadratic term of the cubic nullcline" ; "3.0"^^xsd:double ; rdfs:label "e (Generic2dOscillator parameter)" ; "Coefficient of the quadratic term of the cubic nullcline." ; "e" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/f rdf:type owl:NamedIndividual , ; "Coefficient of the cubic term of the cubic nullcline" ; "1.0"^^xsd:double ; rdfs:label "f (Generic2dOscillator parameter)" ; "Coefficient of the cubic term of the cubic nullcline." ; "f" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/g rdf:type owl:NamedIndividual , ; "Coefficient of the linear term of the cubic nullcline" ; "0.0"^^xsd:double ; rdfs:label "g (Generic2dOscillator parameter)" ; "Coefficient of the linear term of the cubic nullcline." ; "g" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/gamma rdf:type owl:NamedIndividual , ; "Constant parameter to reproduce FHN dynamics where excitatory input currents are negative" ; "1.0"^^xsd:double ; rdfs:label "gamma (Generic2dOscillator parameter)" ; """Constant parameter to reproduce FHN dynamics where excitatory input currents are negative. It scales both I and the long range coupling term.""" ; "gamma" . ### https://w3id.org/tvbo/Generic2dOscillator/parameters/tau rdf:type owl:NamedIndividual , ; "A time-scale hierarchy can be introduced for the state variables :math:`V` and :math:`W`" ; "1.0"^^xsd:double ; rdfs:label "tau (Generic2dOscillator parameter)" ; """A time-scale hierarchy can be introduced for the state variables :math:`V` and :math:`W`. Default parameter is 1, which means no time-scale hierarchy.""" ; "tau" . ### https://w3id.org/tvbo/Generic2dOscillator/state_variables/V rdf:type owl:NamedIndividual , ; "V_G2D is the first state-variable of the Generic 2-Dimensional Oscillator model, that can be associated with membrane potentials and sodium activation (FitzHugh, 1961)" ; ; rdfs:label "V (Generic2dOscillator state variable)" ; "V" ; "Derivative(V, t)" ; "d*tau*(I*gamma - V**3*f + V**2*e + V*g + V*local_coupling + W*alpha + c_glob*gamma)" . ### https://w3id.org/tvbo/Generic2dOscillator/state_variables/W rdf:type owl:NamedIndividual , ; "W_G2D is the second state-variable of the Generic 2-Dimensional Oscillator model, that can be associated with accommodation and refractoriness and considered to represent potassium activation, sodium inactivation, or both (FitzHugh, 1961)" ; ; rdfs:label "W (Generic2dOscillator state variable)" ; "W" ; "Derivative(W, t)" ; "d*(V**2*c + V*b - W*beta + a)/tau" . ### https://w3id.org/tvbo/GenericLinear/parameters/gamma rdf:type owl:NamedIndividual , ; "Slope parameter of the state-variable 'x_GL', representing the inverse of the relaxation time" ; "-10.0"^^xsd:double ; rdfs:label "gamma (GenericLinear parameter)" ; """Slope parameter of the state-variable 'x_GL', representing the inverse of the relaxation time. Note: The ‘minus’ sign for the self-connections, scaled by 'gamma_GL', guarantees that the nodes have a stable equilibrium point (ref).""" ; "gamma" . ### https://w3id.org/tvbo/GenericLinear/state_variables/x rdf:type owl:NamedIndividual , ; "State-variable of the Generic Linear model" ; rdfs:label "x (GenericLinear state variable)" ; "x" ; "Derivative(x, t)" ; "c_pop0 + gamma*x + local_coupling*x" . ### https://w3id.org/tvbo/Hopfield/parameters/tauT rdf:type owl:NamedIndividual , ; "The slow time-scale for threshold calculus :math:`\\\\theta`, state-variable of the model" ; "5.0"^^xsd:double ; rdfs:label "tauT (Hopfield parameter)" ; "The slow time-scale for threshold calculus :math:`\\\\theta`, state-variable of the model." ; "tauT" . ### https://w3id.org/tvbo/Hopfield/parameters/taux rdf:type owl:NamedIndividual , ; "The fast time-scale for potential calculus :math:`x`, state-variable of the model" ; "1.0"^^xsd:double ; rdfs:label "taux (Hopfield parameter)" ; "The fast time-scale for potential calculus :math:`x`, state-variable of the model." ; "taux" . ### https://w3id.org/tvbo/Hopfield/state_variables/theta rdf:type owl:NamedIndividual , ; "Slow state variable at node i" ; rdfs:label "theta (Hopfield state variable)" ; "theta" ; "Derivative(theta, t)" ; "(c_pop1 - theta)/tauT" . ### https://w3id.org/tvbo/Hopfield/state_variables/x rdf:type owl:NamedIndividual , ; rdfs:label "x (Hopfield state variable)" ; "x" ; "Derivative(x, t)" ; "(c_pop0 - x)/taux" . ### https://w3id.org/tvbo/JansenRit/derived_variables/sigma_y0_1 rdf:type owl:NamedIndividual , ; "Sigmoid function that transforms the average membrane potential of the PCs populations (y0) into an average firing rate to the excitatory interneurons EINs." ; rdfs:label "sigma_y0_1 (JansenRit derived variable)" ; "sigma_y0_1" ; "sigma_y0_1" ; "2.0*nu_max/(exp(r*(-J*a_1*y0 + v0)) + 1.0)" . ### https://w3id.org/tvbo/JansenRit/derived_variables/sigma_y0_3 rdf:type owl:NamedIndividual , ; "Sigmoid function that transforms the average membrane potential of the PCs populations (y0) into an average firing rate to the inhibitory interneurons IINs." ; rdfs:label "sigma_y0_3 (JansenRit derived variable)" ; "sigma_y0_3" ; "sigma_y0_3" ; "2.0*nu_max/(exp(r*(-J*a_3*y0 + v0)) + 1.0)" . ### https://w3id.org/tvbo/JansenRit/derived_variables/sigma_y1_y2 rdf:type owl:NamedIndividual , ; """Sigmoid function that transforms the average membrane potential of the interneurons populations (y1-y2) into an average firing rate to the PCs.""" ; rdfs:label "sigma_y1_y2 (JansenRit derived variable)" ; "sigma_y1_y2" ; "sigma_y1_y2" ; "2.0*nu_max/(exp(r*(v0 - y1 + y2)) + 1.0)" . ### https://w3id.org/tvbo/JansenRit/parameters/A rdf:type owl:NamedIndividual , ; "Maximum amplitude of EPSP [mV]" ; "3.25"^^xsd:double ; ; rdfs:label "A (JansenRit parameter)" ; "Maximum amplitude of EPSP [mV]. Also called average synaptic gain." ; "A" ; "mV" . ### https://w3id.org/tvbo/JansenRit/parameters/B rdf:type owl:NamedIndividual , ; "Maximum amplitude of IPSP [mV]" ; "22.0"^^xsd:double ; ; rdfs:label "B (JansenRit parameter)" ; "Maximum amplitude of IPSP [mV]. Also called average synaptic gain." ; "B" ; "mV" . ### https://w3id.org/tvbo/JansenRit/parameters/J rdf:type owl:NamedIndividual , ; "Average number of synapses between three neuronal populations of the model" ; "135.0"^^xsd:double ; , ; rdfs:label "J (JansenRit parameter)" ; "Average number of synapses between three neuronal populations of the model. It accounts for synaptic phenomena such as neurotransmitter depletion." ; "J" . ### https://w3id.org/tvbo/JansenRit/parameters/a rdf:type owl:NamedIndividual , ; "Reciprocal of the time constant of passive membrane and all other spatially distributed delays in the dendritic network. Also called average synaptic time constant." ; "0.1"^^xsd:double ; ; rdfs:label "a (JansenRit parameter)" ; "Rate constant of the excitatory post-synaptic potential (EPSP). It is interpreted as being the lumped representation of the sum of the reciprocal of the time constant of passive membrane and all other spatially distributed delays, including temporal dispersion in the afferent tract, synaptic diffusion, and resistive-capacitive delay in the dendritic network." ; "a" ; "per_ms" . ### https://w3id.org/tvbo/JansenRit/parameters/a_1 rdf:type owl:NamedIndividual , ; "Average probability constant of the number of synapses made by the pyramidal cells to the dendrites of the excitatory interneurons (feedback excitatory loop)" ; "1.0"^^xsd:double ; ; rdfs:label "a_1 (JansenRit parameter)" ; "Average probability constant of the number of synapses made by the pyramidal cells to the dendrites of the excitatory interneurons (feedback excitatory loop). It characterizes the connectivity between the PCs and EINs." ; "a_1" . ### https://w3id.org/tvbo/JansenRit/parameters/a_2 rdf:type owl:NamedIndividual , ; "Average probability constant of the number of synapses made by the EINs to the dendrites of the PCs" ; "0.8"^^xsd:double ; ; rdfs:label "a_2 (JansenRit parameter)" ; "Average probability constant of the number of synapses made by the EINs to the dendrites of the PCs. It characterizes the excitatory connectivity between the EINs and PCs." ; "a_2" . ### https://w3id.org/tvbo/JansenRit/parameters/a_3 rdf:type owl:NamedIndividual , ; "Average probability constant of the number of synapses made by the PCs to the dendrites of the IINs" ; "0.25"^^xsd:double ; ; rdfs:label "a_3 (JansenRit parameter)" ; "Average probability constant of the number of synapses made by the PCs to the dendrites of the IINs. It characterizes the connectivity between the PCs and inhibitory IINs." ; "a_3" . ### https://w3id.org/tvbo/JansenRit/parameters/a_4 rdf:type owl:NamedIndividual , ; "Average probability constant of the number of synapses made by the IINs to the dendrites of the PCs" ; "0.25"^^xsd:double ; , ; rdfs:label "a_4 (JansenRit parameter)" ; "Average probability constant of the number of synapses made by the IINs to the dendrites of the PCs. It characterizes the connectivity between the IINs and PCs." ; "a_4" . ### https://w3id.org/tvbo/JansenRit/parameters/b rdf:type owl:NamedIndividual , ; "Rate constant of the inhibitory post-synaptic potential (IPSP)" ; "0.05"^^xsd:double ; ; rdfs:label "b (JansenRit parameter)" ; "Rate constant of the inhibitory post-synaptic potential (IPSP). It is interpreted as being the lumped representation of the sum of the reciprocal of the time constant of passive membrane and all other spatially distributed delays, including temporal dispersion in the afferent tract, synaptic diffusion, and resistive-capacitive delay in the dendritic network (Freeman 1975)." ; "b" ; "per_ms" . ### https://w3id.org/tvbo/JansenRit/parameters/mu rdf:type owl:NamedIndividual , ; "Mean excitatory external input to the derivative of the state-variable y4_JR (PCs) represented by a pulse density, that consists of activity originating from adjacent and more distant cortical columns, as well as from subcortical structures (e" ; "0.22"^^xsd:double ; ; rdfs:label "mu (JansenRit parameter)" ; "Mean excitatory external input to the derivative of the state-variable y4_JR (PCs) represented by a pulse density, that consists of activity originating from adjacent and more distant cortical columns, as well as from subcortical structures (e.g., thalamus)." ; "mu" ; "per_ms" . ### https://w3id.org/tvbo/JansenRit/parameters/nu_max rdf:type owl:NamedIndividual , ; "Asymptotic of the sigmoid function Sigm_JR corresponds to the maximum firing rate of the neural populations" ; "0.0025"^^xsd:double ; ; rdfs:label "nu_max (JansenRit parameter)" ; "Asymptotic of the sigmoid function Sigm_JR corresponds to the maximum firing rate of the neural populations." ; "nu_max" ; "per_ms" . ### https://w3id.org/tvbo/JansenRit/parameters/r rdf:type owl:NamedIndividual , ; "Steepness (or gain) parameter of the sigmoid function Sigm_JR" ; "0.56"^^xsd:double ; rdfs:label "r (JansenRit parameter)" ; "Steepness (or gain) parameter of the sigmoid function Sigm_JR." ; "r" ; "per_mV" . ### https://w3id.org/tvbo/JansenRit/parameters/v0 rdf:type owl:NamedIndividual , ; "Average firing threshold (PSP) for which half of the firing rate is achieved" ; "5.52"^^xsd:double ; ; rdfs:label "v0 (JansenRit parameter)" ; """Average firing threshold (PSP) for which half of the firing rate is achieved. Note: - The usual value for this parameter is 6.0 (Jansen et al., 1993; Jansen & Rit, 1995).""" ; "v0" ; "mV" . ### https://w3id.org/tvbo/JansenRit/state_variables/y0 rdf:type owl:NamedIndividual , ; "First state-variable of the first Jansen-Rit population" ; , ; rdfs:label "y0 (JansenRit state variable)" ; "y0" ; "Derivative(y0, t)" ; "y3" . ### https://w3id.org/tvbo/JansenRit/state_variables/y1 rdf:type owl:NamedIndividual , ; "First state-variable of the second Jansen-Rit population (EINs)" ; , , ; rdfs:label "y1 (JansenRit state variable)" ; "y1" ; "Derivative(y1, t)" ; "y4" . ### https://w3id.org/tvbo/JansenRit/state_variables/y2 rdf:type owl:NamedIndividual , ; "First state-variable of the third Jansen-Rit population (IINs)" ; , ; rdfs:label "y2 (JansenRit state variable)" ; "y2" ; "Derivative(y2, t)" ; "y5" . ### https://w3id.org/tvbo/JansenRit/state_variables/y3 rdf:type owl:NamedIndividual , ; "Second state-variable of the first Jansen-Rit population (excitatory PCs)" ; ; rdfs:label "y3 (JansenRit state variable)" ; "y3" ; "Derivative(y3, t)" ; "A*a*sigma_y1_y2 - a**2*y0 - 2.0*a*y3" . ### https://w3id.org/tvbo/JansenRit/state_variables/y4 rdf:type owl:NamedIndividual , ; "Second state-variable of the second excitatory Jansen-Rit population (excitatory EINs)" ; ; rdfs:label "y4 (JansenRit state variable)" ; "y4" ; "Derivative(y4, t)" ; "A*a*(J*a_2*sigma_y0_1 + c_pop0 + local_coupling*(y1 - y2) + mu) - a**2*y1 - 2.0*a*y4" . ### https://w3id.org/tvbo/JansenRit/state_variables/y5 rdf:type owl:NamedIndividual , ; "Second state-variable of the third (inhibitory) Jansen-Rit population (IINs)" ; ; rdfs:label "y5 (JansenRit state variable)" ; "y5" ; "Derivative(y5, t)" ; "B*J*a_4*b*sigma_y0_3 - b**2*y2 - 2.0*b*y5" . ### https://w3id.org/tvbo/JansenRit1995/derived_variables/v_pyr rdf:type owl:NamedIndividual , ; "Aggregate pyramidal PSP (EEG-like output)" ; rdfs:label "v_pyr (JansenRit1995 derived variable)" ; "v_pyr" ; "y1 - y2" . ### https://w3id.org/tvbo/JansenRit1995/parameters/A rdf:type owl:NamedIndividual , ; "Maximum amplitude of excitatory PSP (EPSP)" ; "3.25"^^xsd:double ; rdfs:label "A (JansenRit1995 parameter)" ; "A" ; "mV" . ### https://w3id.org/tvbo/JansenRit1995/parameters/B rdf:type owl:NamedIndividual , ; "Maximum amplitude of inhibitory PSP (IPSP)" ; 22 ; rdfs:label "B (JansenRit1995 parameter)" ; "B" ; "mV" . ### https://w3id.org/tvbo/JansenRit1995/parameters/C rdf:type owl:NamedIndividual , ; "Lumped connectivity constant (C = C1)" ; 135 ; rdfs:label "C (JansenRit1995 parameter)" ; "C" . ### https://w3id.org/tvbo/JansenRit1995/parameters/a rdf:type owl:NamedIndividual , ; "Reciprocal of EPSP time constant" ; 100 ; rdfs:label "a (JansenRit1995 parameter)" ; "a" ; "per_s" . ### https://w3id.org/tvbo/JansenRit1995/parameters/b rdf:type owl:NamedIndividual , ; "Reciprocal of IPSP time constant" ; 50 ; rdfs:label "b (JansenRit1995 parameter)" ; "b" ; "per_s" . ### https://w3id.org/tvbo/JansenRit1995/parameters/e0 rdf:type owl:NamedIndividual , ; "Half of maximum firing rate (2*e0 = max rate)" ; "2.5"^^xsd:double ; rdfs:label "e0 (JansenRit1995 parameter)" ; "e0" ; "per_s" . ### https://w3id.org/tvbo/JansenRit1995/parameters/p rdf:type owl:NamedIndividual , ; "Mean external input (afferent pulse density)" ; 220 ; rdfs:label "p (JansenRit1995 parameter)" ; "p" ; "per_s" . ### https://w3id.org/tvbo/JansenRit1995/parameters/r rdf:type owl:NamedIndividual , ; "Steepness of sigmoid transformation" ; "0.56"^^xsd:double ; rdfs:label "r (JansenRit1995 parameter)" ; "r" ; "per_mV" . ### https://w3id.org/tvbo/JansenRit1995/parameters/v0 rdf:type owl:NamedIndividual , ; "PSP for 50% firing rate (sigmoid midpoint)" ; 6 ; rdfs:label "v0 (JansenRit1995 parameter)" ; "v0" ; "mV" . ### https://w3id.org/tvbo/JansenRit1995/state_variables/y0 rdf:type owl:NamedIndividual , ; rdfs:label "y0 (JansenRit1995 state variable)" ; "y0" ; "y3" . ### https://w3id.org/tvbo/JansenRit1995/state_variables/y1 rdf:type owl:NamedIndividual , ; rdfs:label "y1 (JansenRit1995 state variable)" ; "y1" ; "y4" . ### https://w3id.org/tvbo/JansenRit1995/state_variables/y2 rdf:type owl:NamedIndividual , ; rdfs:label "y2 (JansenRit1995 state variable)" ; "y2" ; "y5" . ### https://w3id.org/tvbo/JansenRit1995/state_variables/y3 rdf:type owl:NamedIndividual , ; rdfs:label "y3 (JansenRit1995 state variable)" ; "y3" ; "A*a*Sigm(y1 - y2) - 2*a*y3 - a**2*y0" . ### https://w3id.org/tvbo/JansenRit1995/state_variables/y4 rdf:type owl:NamedIndividual , ; rdfs:label "y4 (JansenRit1995 state variable)" ; "y4" ; "A*a*(p + C2*Sigm(C1*y0) + c_intercolumn) - 2*a*y4 - a**2*y1" . ### https://w3id.org/tvbo/JansenRit1995/state_variables/y5 rdf:type owl:NamedIndividual , ; rdfs:label "y5 (JansenRit1995 state variable)" ; "y5" ; "B*b*(C4*Sigm(C3*y0)) - 2*b*y5 - b**2*y2" . ### https://w3id.org/tvbo/KIonEx/derived_variables/DK_o rdf:type owl:NamedIndividual , ; rdfs:label "DK_o (KIonEx derived variable)" ; "DK_o" ; "DK_o" ; "-DKi*beta" . ### https://w3id.org/tvbo/KIonEx/derived_variables/DNa_i rdf:type owl:NamedIndividual , ; rdfs:label "DNa_i (KIonEx derived variable)" ; "DNa_i" ; "DNa_i" ; "-DKi" . ### https://w3id.org/tvbo/KIonEx/derived_variables/DNa_o rdf:type owl:NamedIndividual , ; rdfs:label "DNa_o (KIonEx derived variable)" ; "DNa_o" ; "DNa_o" ; "-DNa_i*beta" . ### https://w3id.org/tvbo/KIonEx/derived_variables/I_Cl rdf:type owl:NamedIndividual , ; rdfs:label "I_Cl (KIonEx derived variable)" ; "I_Cl" ; "I_Cl" ; "g_Cl*(V + 26.64*log(Cl_o0/Cl_i0))" . ### https://w3id.org/tvbo/KIonEx/derived_variables/I_K rdf:type owl:NamedIndividual , ; rdfs:label "I_K (KIonEx derived variable)" ; "I_K" ; "I_K" ; "(V - 26.64*log(K_o/K_i))*(g_K*n + g_Kl)" . ### https://w3id.org/tvbo/KIonEx/derived_variables/I_Na rdf:type owl:NamedIndividual , ; rdfs:label "I_Na (KIonEx derived variable)" ; "I_Na" ; "I_Na" ; "(V - 26.64*log(Na_o/Na_i))*(g_Na*h*minf + g_Nal)" . ### https://w3id.org/tvbo/KIonEx/derived_variables/I_pump rdf:type owl:NamedIndividual , ; rdfs:label "I_pump (KIonEx derived variable)" ; "I_pump" ; "I_pump" ; "1.0*rho/((exp((Ckp - K_o)/DCkp) + 1.0)*(exp((Cnap - Na_i)/DCnap) + 1.0))" . ### https://w3id.org/tvbo/KIonEx/derived_variables/K_i rdf:type owl:NamedIndividual , ; rdfs:label "K_i (KIonEx derived variable)" ; "K_i" ; "K_i" ; "DKi + K_i0" . ### https://w3id.org/tvbo/KIonEx/derived_variables/K_o rdf:type owl:NamedIndividual , ; rdfs:label "K_o (KIonEx derived variable)" ; "K_o" ; "K_o" ; "DK_o + K_o0 + Kg" . ### https://w3id.org/tvbo/KIonEx/derived_variables/Na_i rdf:type owl:NamedIndividual , ; rdfs:label "Na_i (KIonEx derived variable)" ; "Na_i" ; "Na_i" ; "DNa_i + Na_i0" . ### https://w3id.org/tvbo/KIonEx/derived_variables/Na_o rdf:type owl:NamedIndividual , ; rdfs:label "Na_o (KIonEx derived variable)" ; "Na_o" ; "Na_o" ; "DNa_o + Na_o0" . ### https://w3id.org/tvbo/KIonEx/derived_variables/V_temp rdf:type owl:NamedIndividual , ; rdfs:label "V_temp (KIonEx derived variable)" ; "V_temp" ; "V_temp" ; "-1.0*(I_Cl + I_K + I_Na + I_pump)/Cm" . ### https://w3id.org/tvbo/KIonEx/derived_variables/Vcond rdf:type owl:NamedIndividual , ; rdfs:label "Vcond (KIonEx derived variable)" ; "Vcond" ; "Vcond" ; "Piecewise((R_minus*c_pop0*(-V + E)/pi - R_minus*x**2 + V_temp + eta, V <= Vstar), (R_minus*c_pop0*(-V + E)/pi - R_plus*x**2 + V_temp + eta, True))" . ### https://w3id.org/tvbo/KIonEx/derived_variables/beta rdf:type owl:NamedIndividual , ; rdfs:label "beta (KIonEx derived variable)" ; "beta" ; "beta" ; "w_i/w_o" . ### https://w3id.org/tvbo/KIonEx/derived_variables/h rdf:type owl:NamedIndividual , ; rdfs:label "h (KIonEx derived variable)" ; "h" ; "h" ; "1.1 - 1.0/(1.0 + 24.5325301971094*exp(-8.0*n))" . ### https://w3id.org/tvbo/KIonEx/derived_variables/minf rdf:type owl:NamedIndividual , ; rdfs:label "minf (KIonEx derived variable)" ; "minf" ; "minf" ; "1.0/(exp((Cmna - V)/DCmna) + 1.0)" . ### https://w3id.org/tvbo/KIonEx/derived_variables/ninf rdf:type owl:NamedIndividual , ; rdfs:label "ninf (KIonEx derived variable)" ; "ninf" ; "ninf" ; "1.0/(exp((Cnk - V)/DCnk) + 1.0)" . ### https://w3id.org/tvbo/KIonEx/derived_variables/r rdf:type owl:NamedIndividual , ; rdfs:label "r (KIonEx derived variable)" ; "r" ; "r" ; "R_minus*x/pi" . ### https://w3id.org/tvbo/KIonEx/derived_variables/xcond rdf:type owl:NamedIndividual , ; rdfs:label "xcond (KIonEx derived variable)" ; "xcond" ; "xcond" ; "Piecewise((Delta - J*r*x + 2*R_minus*x*(V - c_minus), V <= Vstar), (Delta - J*r*x + 2*R_plus*x*(V - c_plus), True))" . ### https://w3id.org/tvbo/KIonEx/parameters/Chn rdf:type owl:NamedIndividual , ; "0.4"^^xsd:double ; rdfs:label "Chn (KIonEx parameter)" ; "Chn" . ### https://w3id.org/tvbo/KIonEx/parameters/Ckp rdf:type owl:NamedIndividual , ; "5.5"^^xsd:double ; rdfs:label "Ckp (KIonEx parameter)" ; "Ckp" ; "mol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/Cl_i0 rdf:type owl:NamedIndividual , ; "initial concentration of intracellular Cl" ; "5.0"^^xsd:double ; rdfs:label "Cl_i0 (KIonEx parameter)" ; "initial concentration of intracellular Cl" ; "Cl_i0" ; "mmol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/Cl_o0 rdf:type owl:NamedIndividual , ; "initial concentration of extracellular Cl" ; "112.0"^^xsd:double ; rdfs:label "Cl_o0 (KIonEx parameter)" ; "initial concentration of extracellular Cl" ; "Cl_o0" ; "mmol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/Cm rdf:type owl:NamedIndividual , ; "membrane capacitance" ; "1.0"^^xsd:double ; ; rdfs:label "Cm (KIonEx parameter)" ; "membrane capacitance" ; "Cm" . ### https://w3id.org/tvbo/KIonEx/parameters/Cmna rdf:type owl:NamedIndividual , ; "-24.0"^^xsd:double ; rdfs:label "Cmna (KIonEx parameter)" ; "Cmna" ; "mV" . ### https://w3id.org/tvbo/KIonEx/parameters/Cnap rdf:type owl:NamedIndividual , ; "21.0"^^xsd:double ; rdfs:label "Cnap (KIonEx parameter)" ; "Cnap" ; "mol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/Cnk rdf:type owl:NamedIndividual , ; "-19.0"^^xsd:double ; rdfs:label "Cnk (KIonEx parameter)" ; "Cnk" ; "mV" . ### https://w3id.org/tvbo/KIonEx/parameters/DChn rdf:type owl:NamedIndividual , ; "-8.0"^^xsd:double ; rdfs:label "DChn (KIonEx parameter)" ; "DChn" . ### https://w3id.org/tvbo/KIonEx/parameters/DCkp rdf:type owl:NamedIndividual , ; "1.0"^^xsd:double ; rdfs:label "DCkp (KIonEx parameter)" ; "DCkp" ; "mol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/DCmna rdf:type owl:NamedIndividual , ; "12.0"^^xsd:double ; rdfs:label "DCmna (KIonEx parameter)" ; "DCmna" ; "mV" . ### https://w3id.org/tvbo/KIonEx/parameters/DCnap rdf:type owl:NamedIndividual , ; "2.0"^^xsd:double ; rdfs:label "DCnap (KIonEx parameter)" ; "DCnap" ; "mol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/DCnk rdf:type owl:NamedIndividual , ; "18.0"^^xsd:double ; rdfs:label "DCnk (KIonEx parameter)" ; "DCnk" ; "mV" . ### https://w3id.org/tvbo/KIonEx/parameters/Delta rdf:type owl:NamedIndividual , ; "HWHM heterogeneous noise" ; "1.0"^^xsd:double ; rdfs:label "Delta (KIonEx parameter)" ; "HWHM heterogeneous noise" ; "Delta" . ### https://w3id.org/tvbo/KIonEx/parameters/E rdf:type owl:NamedIndividual , ; "Reversal Potential" ; "0.0"^^xsd:double ; ; rdfs:label "E (KIonEx parameter)" ; "Reversal Potential" ; "E" . ### https://w3id.org/tvbo/KIonEx/parameters/J rdf:type owl:NamedIndividual , ; "Mean Synaptic weight" ; "0.1"^^xsd:double ; ; rdfs:label "J (KIonEx parameter)" ; "Mean Synaptic weight" ; "J" . ### https://w3id.org/tvbo/KIonEx/parameters/K_bath rdf:type owl:NamedIndividual , ; "Potassium concentration in bath" ; "5.5"^^xsd:double ; ; rdfs:label "K_bath (KIonEx parameter)" ; "Potassium concentration in bath" ; "K_bath" . ### https://w3id.org/tvbo/KIonEx/parameters/K_i0 rdf:type owl:NamedIndividual , ; "initial concentration of intracellular K" ; "130.0"^^xsd:double ; rdfs:label "K_i0 (KIonEx parameter)" ; "initial concentration of intracellular K" ; "K_i0" ; "mmol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/K_o0 rdf:type owl:NamedIndividual , ; "initial concentration of extracellular K" ; "4.8"^^xsd:double ; rdfs:label "K_o0 (KIonEx parameter)" ; "initial concentration of extracellular K" ; "K_o0" ; "mmol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/Na_i0 rdf:type owl:NamedIndividual , ; "initial concentration of intracellular Na" ; "16.0"^^xsd:double ; rdfs:label "Na_i0 (KIonEx parameter)" ; "initial concentration of intracellular Na" ; "Na_i0" ; "mmol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/Na_o0 rdf:type owl:NamedIndividual , ; "initial concentration of extracellular Na" ; "138.0"^^xsd:double ; rdfs:label "Na_o0 (KIonEx parameter)" ; "initial concentration of extracellular Na" ; "Na_o0" ; "mmol_per_m3" . ### https://w3id.org/tvbo/KIonEx/parameters/R_minus rdf:type owl:NamedIndividual , ; "curvature left parabola" ; "0.5"^^xsd:double ; rdfs:label "R_minus (KIonEx parameter)" ; "curvature left parabola" ; "R_minus" . ### https://w3id.org/tvbo/KIonEx/parameters/R_plus rdf:type owl:NamedIndividual , ; "curvature right parabola" ; "-0.5"^^xsd:double ; rdfs:label "R_plus (KIonEx parameter)" ; "curvature right parabola" ; "R_plus" . ### https://w3id.org/tvbo/KIonEx/parameters/Vstar rdf:type owl:NamedIndividual , ; "x-coordinate meeting point of parabolas" ; "-31.0"^^xsd:double ; rdfs:label "Vstar (KIonEx parameter)" ; "x-coordinate meeting point of parabolas" ; "Vstar" . ### https://w3id.org/tvbo/KIonEx/parameters/c_minus rdf:type owl:NamedIndividual , ; "x-coordinate left parabola" ; "-40.0"^^xsd:double ; rdfs:label "c_minus (KIonEx parameter)" ; "x-coordinate left parabola" ; "c_minus" . ### https://w3id.org/tvbo/KIonEx/parameters/c_plus rdf:type owl:NamedIndividual , ; "x-coordinate right parabola" ; "-20.0"^^xsd:double ; rdfs:label "c_plus (KIonEx parameter)" ; "x-coordinate right parabola" ; "c_plus" . ### https://w3id.org/tvbo/KIonEx/parameters/epsilon rdf:type owl:NamedIndividual , ; "diffusion rate" ; "0.001"^^xsd:double ; rdfs:label "epsilon (KIonEx parameter)" ; "diffusion rate" ; "epsilon" . ### https://w3id.org/tvbo/KIonEx/parameters/eta rdf:type owl:NamedIndividual , ; "Mean heterogeneous noise" ; "0.0"^^xsd:double ; rdfs:label "eta (KIonEx parameter)" ; "Mean heterogeneous noise" ; "eta" . ### https://w3id.org/tvbo/KIonEx/parameters/g_Cl rdf:type owl:NamedIndividual , ; "chloride conductance" ; "7.5"^^xsd:double ; rdfs:label "g_Cl (KIonEx parameter)" ; "chloride conductance" ; "g_Cl" ; "nS" . ### https://w3id.org/tvbo/KIonEx/parameters/g_K rdf:type owl:NamedIndividual , ; "maximal potassium conductance" ; "22.0"^^xsd:double ; rdfs:label "g_K (KIonEx parameter)" ; "maximal potassium conductance" ; "g_K" ; "nS" . ### https://w3id.org/tvbo/KIonEx/parameters/g_Kl rdf:type owl:NamedIndividual , ; "potassium leak conductance" ; "0.12"^^xsd:double ; rdfs:label "g_Kl (KIonEx parameter)" ; "potassium leak conductance" ; "g_Kl" ; "nS" . ### https://w3id.org/tvbo/KIonEx/parameters/g_Na rdf:type owl:NamedIndividual , ; "maximal sodiumconductance" ; "40.0"^^xsd:double ; rdfs:label "g_Na (KIonEx parameter)" ; "maximal sodiumconductance" ; "g_Na" ; "nS" . ### https://w3id.org/tvbo/KIonEx/parameters/g_Nal rdf:type owl:NamedIndividual , ; "sodium leak conductance" ; "0.02"^^xsd:double ; rdfs:label "g_Nal (KIonEx parameter)" ; "sodium leak conductance" ; "g_Nal" ; "nS" . ### https://w3id.org/tvbo/KIonEx/parameters/gamma rdf:type owl:NamedIndividual , ; "conversion factor" ; "0.04"^^xsd:double ; rdfs:label "gamma (KIonEx parameter)" ; "conversion factor" ; "gamma" . ### https://w3id.org/tvbo/KIonEx/parameters/rho rdf:type owl:NamedIndividual , ; "maximal Na/K pump current" ; "250.0"^^xsd:double ; rdfs:label "rho (KIonEx parameter)" ; "maximal Na/K pump current" ; "rho" ; "pA" . ### https://w3id.org/tvbo/KIonEx/parameters/tau_n rdf:type owl:NamedIndividual , ; "time constant of gating variable" ; "4.0"^^xsd:double ; rdfs:label "tau_n (KIonEx parameter)" ; "time constant of gating variable" ; "tau_n" . ### https://w3id.org/tvbo/KIonEx/parameters/w_i rdf:type owl:NamedIndividual , ; "intracellular volume" ; "2160.0"^^xsd:double ; rdfs:label "w_i (KIonEx parameter)" ; "intracellular volume" ; "w_i" ; "um3" . ### https://w3id.org/tvbo/KIonEx/parameters/w_o rdf:type owl:NamedIndividual , ; "extracellular volume" ; "720.0"^^xsd:double ; rdfs:label "w_o (KIonEx parameter)" ; "extracellular volume" ; "w_o" ; "um3" . ### https://w3id.org/tvbo/KIonEx/state_variables/DKi rdf:type owl:NamedIndividual , ; rdfs:label "DKi (KIonEx state variable)" ; "DKi" ; "Derivative(DKi, t)" ; "-gamma*(I_K - 2.0*I_pump)/w_i" . ### https://w3id.org/tvbo/KIonEx/state_variables/Kg rdf:type owl:NamedIndividual , ; rdfs:label "Kg (KIonEx state variable)" ; "Kg" ; "Derivative(Kg, t)" ; "epsilon*(K_bath - K_o)" . ### https://w3id.org/tvbo/KIonEx/state_variables/V rdf:type owl:NamedIndividual , ; rdfs:label "V (KIonEx state variable)" ; "V" ; "Derivative(V, t)" ; "Vcond" . ### https://w3id.org/tvbo/KIonEx/state_variables/n rdf:type owl:NamedIndividual , ; rdfs:label "n (KIonEx state variable)" ; "n" ; "Derivative(n, t)" ; "(-n + ninf)/tau_n" . ### https://w3id.org/tvbo/KIonEx/state_variables/x rdf:type owl:NamedIndividual , ; rdfs:label "x (KIonEx state variable)" ; "x" ; "Derivative(x, t)" ; "xcond" . ### https://w3id.org/tvbo/Kuramoto/derived_variables/I rdf:type owl:NamedIndividual , ; "Input via local and long range connectivity, passing first through the Kuramoto coupling function" ; rdfs:label "I (Kuramoto derived variable)" ; "I" ; "I" ; "c_pop0 + lc_0" . ### https://w3id.org/tvbo/Kuramoto/derived_variables/lc_0 rdf:type owl:NamedIndividual , ; rdfs:label "lc_0 (Kuramoto derived variable)" ; "lc_0" ; "lc_0" ; "sin(local_coupling*theta)" . ### https://w3id.org/tvbo/Kuramoto/parameters/omega rdf:type owl:NamedIndividual , ; "Sets the base line frequency for the Kuramoto oscillator" ; "1.0"^^xsd:double ; rdfs:label "omega (Kuramoto parameter)" ; "Sets the base line frequency for the Kuramoto oscillator." ; "omega" ; "rad_per_ms" . ### https://w3id.org/tvbo/Kuramoto/state_variables/theta rdf:type owl:NamedIndividual , ; "The Kuramoto model has only one state variable representing oscillations in general" ; rdfs:label "theta (Kuramoto state variable)" ; "theta" ; "Derivative(theta, t)" ; "I + omega" . ### https://w3id.org/tvbo/KuramotoModel2/derived_variables/I rdf:type owl:NamedIndividual , ; "`I` is the input via local and long range connectivity, passing first through the Kuramoto coupling function" ; rdfs:label "I (KuramotoModel2 derived variable)" ; "I" ; "I" ; "c_glob+lc_0" . ### https://w3id.org/tvbo/KuramotoModel2/derived_variables/lc_0 rdf:type owl:NamedIndividual , ; rdfs:label "lc_0 (KuramotoModel2 derived variable)" ; "lc_0" ; "lc_0" ; "sin(local_coupling*theta)" . ### https://w3id.org/tvbo/KuramotoModel2/derived_variables/phase rdf:type owl:NamedIndividual , ; "Normalized phase output" ; rdfs:label "phase (KuramotoModel2 derived variable)" ; "phase" ; "theta / (2*pi)" . ### https://w3id.org/tvbo/KuramotoModel2/derived_variables/signal rdf:type owl:NamedIndividual , ; "Sinusoidal signal output" ; rdfs:label "signal (KuramotoModel2 derived variable)" ; "signal" ; "sin(theta)" . ### https://w3id.org/tvbo/KuramotoModel2/parameters/omega rdf:type owl:NamedIndividual , ; "1.0"^^xsd:double ; rdfs:label "omega (KuramotoModel2 parameter)" ; "Sets the base line frequency for the Kuramoto oscillator in [rad/ms]." ; "omega" . ### https://w3id.org/tvbo/KuramotoModel2/state_variables/theta rdf:type owl:NamedIndividual , ; "The Kuramoto model has only one state variable representing oscillations in general" ; rdfs:label "theta (KuramotoModel2 state variable)" ; "theta" ; "thetadot" ; "omega + I" . ### https://w3id.org/tvbo/LarterBreakspear/derived_variables/Q_V rdf:type owl:NamedIndividual , ; "Average firing rate of the population of PCs, V." ; ; rdfs:label "Q_V (LarterBreakspear derived variable)" ; "Q_V" ; "Q_V" ; "0.5*Q_Vmax*(tanh((V - V_T)/delta_V) + 1)" . ### https://w3id.org/tvbo/LarterBreakspear/derived_variables/Q_Z rdf:type owl:NamedIndividual , ; "Average firing rate of the population of IINs, Z." ; ; rdfs:label "Q_Z (LarterBreakspear derived variable)" ; "Q_Z" ; "Q_Z" ; "0.5*Q_Zmax*(tanh((Z - Z_T)/delta_Z) + 1)" . ### https://w3id.org/tvbo/LarterBreakspear/derived_variables/lc_0 rdf:type owl:NamedIndividual , ; rdfs:label "lc_0 (LarterBreakspear derived variable)" ; "lc_0" ; "lc_0" ; "Q_V*local_coupling" . ### https://w3id.org/tvbo/LarterBreakspear/derived_variables/m_Ca rdf:type owl:NamedIndividual , ; """Fraction of open calcium channels (Breakspear et al., 2003b). Describes relationship between membrane voltage and channel conductance.""" ; ; rdfs:label "m_Ca (LarterBreakspear derived variable)" ; "m_Ca" ; "m_Ca" ; "0.5*tanh((-T_Ca + V)/delta_Ca) + 0.5" . ### https://w3id.org/tvbo/LarterBreakspear/derived_variables/m_K rdf:type owl:NamedIndividual , ; """Fraction of open potassium channels (Breakspear et al., 2003b). Describes relationship between membrane voltage and channel conductance.""" ; ; rdfs:label "m_K (LarterBreakspear derived variable)" ; "m_K" ; "m_K" ; "0.5*tanh((-T_K + V)/delta_K) + 0.5" . ### https://w3id.org/tvbo/LarterBreakspear/derived_variables/m_Na rdf:type owl:NamedIndividual , ; """Fraction of open sodium channels (Breakspear et al., 2003b). Describes relationship between membrane voltage and channel conductance.""" ; ; rdfs:label "m_Na (LarterBreakspear derived variable)" ; "m_Na" ; "m_Na" ; "0.5*tanh((-T_Na + V)/delta_Na) + 0.5" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/C rdf:type owl:NamedIndividual , ; "Coupling scaling factor" ; "0.1"^^xsd:double ; ; rdfs:label "C (LarterBreakspear parameter)" ; "Coupling scaling factor. Strength of excitatory coupling and balance between internal and local/global coupling strength." ; "C" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/I_ext rdf:type owl:NamedIndividual , ; "Subcortical input current" ; "0.3"^^xsd:double ; ; rdfs:label "I_ext (LarterBreakspear parameter)" ; "Subcortical input current. Represents a non-specific excitation or thalamic inputs." ; "I_ext" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/Q_Vmax rdf:type owl:NamedIndividual , ; "Maximal firing rate for excitatory populations" ; "1.0"^^xsd:double ; , ; rdfs:label "Q_Vmax (LarterBreakspear parameter)" ; "Maximal firing rate for excitatory populations." ; "Q_Vmax" ; "kHz" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/Q_Zmax rdf:type owl:NamedIndividual , ; "Maximal firing rate for inhibitory population" ; "1.0"^^xsd:double ; ; rdfs:label "Q_Zmax (LarterBreakspear parameter)" ; "Maximal firing rate for inhibitory population." ; "Q_Zmax" ; "kHz" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/T_Ca rdf:type owl:NamedIndividual , ; "Threshold value for Ca channels" ; "-0.01"^^xsd:double ; , ; rdfs:label "T_Ca (LarterBreakspear parameter)" ; "Threshold value for Ca channels." ; "T_Ca" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/T_K rdf:type owl:NamedIndividual , ; "Threshold value for K channels" ; "0.0"^^xsd:double ; ; rdfs:label "T_K (LarterBreakspear parameter)" ; "Threshold value for K channels." ; "T_K" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/T_Na rdf:type owl:NamedIndividual , ; "Threshold value for sodium channels" ; "0.3"^^xsd:double ; ; rdfs:label "T_Na (LarterBreakspear parameter)" ; "Threshold value for sodium channels." ; "T_Na" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/V_Ca rdf:type owl:NamedIndividual , ; "Calcium Nernst potential" ; "1.0"^^xsd:double ; ; rdfs:label "V_Ca (LarterBreakspear parameter)" ; "Calcium Nernst potential." ; "V_Ca" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/V_K rdf:type owl:NamedIndividual , ; "K Nernst potential" ; "-0.7"^^xsd:double ; ; rdfs:label "V_K (LarterBreakspear parameter)" ; "K Nernst potential." ; "V_K" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/V_L rdf:type owl:NamedIndividual , ; "Nernst potential leak channels" ; "-0.5"^^xsd:double ; ; rdfs:label "V_L (LarterBreakspear parameter)" ; "Nernst potential leak channels." ; "V_L" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/V_Na rdf:type owl:NamedIndividual , ; "Na Nernst potential" ; "0.53"^^xsd:double ; ; rdfs:label "V_Na (LarterBreakspear parameter)" ; "Na Nernst potential." ; "V_Na" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/V_T rdf:type owl:NamedIndividual , ; "Threshold potential for excitatory neurons" ; "0.0"^^xsd:double ; ; rdfs:label "V_T (LarterBreakspear parameter)" ; "Threshold potential for excitatory neurons. Describes the mean potential of the excitatory population." ; "V_T" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/Z_T rdf:type owl:NamedIndividual , ; "Threshold potential (mean) for inihibtory neurons" ; "0.0"^^xsd:double ; ; rdfs:label "Z_T (LarterBreakspear parameter)" ; "Threshold potential (mean) for inihibtory neurons." ; "Z_T" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/a_ee rdf:type owl:NamedIndividual , ; "Excitatory-to-excitatory synaptic strength" ; "0.4"^^xsd:double ; ; rdfs:label "a_ee (LarterBreakspear parameter)" ; "Excitatory-to-excitatory synaptic strength." ; "a_ee" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/a_ei rdf:type owl:NamedIndividual , ; "Excitatory-to-inhibitory synaptic strength" ; "2.0"^^xsd:double ; ; rdfs:label "a_ei (LarterBreakspear parameter)" ; "Excitatory-to-inhibitory synaptic strength." ; "a_ei" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/a_ie rdf:type owl:NamedIndividual , ; "Inhibitory-to-excitatory synaptic strength" ; "2.0"^^xsd:double ; ; rdfs:label "a_ie (LarterBreakspear parameter)" ; "Inhibitory-to-excitatory synaptic strength." ; "a_ie" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/a_ne rdf:type owl:NamedIndividual , ; "Non-specific-to-excitatory synaptic strength" ; "1.0"^^xsd:double ; ; rdfs:label "a_ne (LarterBreakspear parameter)" ; "Non-specific-to-excitatory synaptic strength." ; "a_ne" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/a_ni rdf:type owl:NamedIndividual , ; "Non-specific-to-inhibitory synaptic strength" ; "0.4"^^xsd:double ; ; rdfs:label "a_ni (LarterBreakspear parameter)" ; "Non-specific-to-inhibitory synaptic strength." ; "a_ni" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/b rdf:type owl:NamedIndividual , ; "Time constant scaling factor" ; "0.1"^^xsd:double ; rdfs:label "b (LarterBreakspear parameter)" ; "Time constant scaling factor." ; "b" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/delta_Ca rdf:type owl:NamedIndividual , ; "Variance of Calcium channel threshold" ; "0.15"^^xsd:double ; ; rdfs:label "delta_Ca (LarterBreakspear parameter)" ; "Variance of Calcium channel threshold. Defines the steepness of the sigmoid $m_{Ca}$." ; "delta_Ca" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/delta_K rdf:type owl:NamedIndividual , ; "Variance of Potassium channel threshold" ; "0.3"^^xsd:double ; ; rdfs:label "delta_K (LarterBreakspear parameter)" ; "Variance of Potassium channel threshold. Defines the steepness of the sigmoid $m_K$." ; "delta_K" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/delta_Na rdf:type owl:NamedIndividual , ; "Variance of sodium channel threshold" ; "0.15"^^xsd:double ; ; rdfs:label "delta_Na (LarterBreakspear parameter)" ; "Variance of sodium channel threshold. Defines the steepness of the sigmoid $m_{Na}$." ; "delta_Na" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/delta_V rdf:type owl:NamedIndividual , ; "Variance of excitatory threshold" ; "0.65"^^xsd:double ; , ; rdfs:label "delta_V (LarterBreakspear parameter)" ; "Variance of excitatory threshold. Defines the steepness of sigmoid $Q_V$." ; "delta_V" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/delta_Z rdf:type owl:NamedIndividual , ; "Variance of inhibitory threshold" ; "0.7"^^xsd:double ; ; rdfs:label "delta_Z (LarterBreakspear parameter)" ; "Variance of inhibitory threshold. Defines the steepness of sigmoid $Q_Z$." ; "delta_Z" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/g_Ca rdf:type owl:NamedIndividual , ; "Conductance of population of calcium (Ca++) channels" ; "1.1"^^xsd:double ; ; rdfs:label "g_Ca (LarterBreakspear parameter)" ; "Conductance of population of calcium (Ca++) channels. Describes the maximal conductance if all channels are open." ; "g_Ca" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/g_K rdf:type owl:NamedIndividual , ; "Conductance of population of potassium (K) channels" ; "2.0"^^xsd:double ; ; rdfs:label "g_K (LarterBreakspear parameter)" ; "Conductance of population of potassium (K) channels. Describes the maximal conductance if all channels are open." ; "g_K" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/g_L rdf:type owl:NamedIndividual , ; "Conductance of population of leak channels" ; "0.5"^^xsd:double ; ; rdfs:label "g_L (LarterBreakspear parameter)" ; "Conductance of population of leak channels." ; "g_L" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/g_Na rdf:type owl:NamedIndividual , ; "Conductance of population of Na channels" ; "6.7"^^xsd:double ; ; rdfs:label "g_Na (LarterBreakspear parameter)" ; "Conductance of population of Na channels." ; "g_Na" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/phi rdf:type owl:NamedIndividual , ; "Temperature scaling factor" ; "0.7"^^xsd:double ; rdfs:label "phi (LarterBreakspear parameter)" ; "Temperature scaling factor." ; "phi" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/r_NMDA rdf:type owl:NamedIndividual , ; "Ratio of NMDA to AMPA receptors" ; "0.25"^^xsd:double ; ; rdfs:label "r_NMDA (LarterBreakspear parameter)" ; "Ratio of NMDA to AMPA receptors." ; "r_NMDA" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/t_scale rdf:type owl:NamedIndividual , ; "Time scale factor" ; "1.0"^^xsd:double ; rdfs:label "t_scale (LarterBreakspear parameter)" ; "Time scale factor" ; "t_scale" . ### https://w3id.org/tvbo/LarterBreakspear/parameters/tau_K rdf:type owl:NamedIndividual , ; "Time constant for K relaxation time (ms)" ; "1.0"^^xsd:double ; ; rdfs:label "tau_K (LarterBreakspear parameter)" ; "Time constant for K relaxation time (ms)" ; "tau_K" . ### https://w3id.org/tvbo/LarterBreakspear/state_variables/V rdf:type owl:NamedIndividual , ; "First state-variable of the Larter-Breakspear (Breakspear et al" ; ; rdfs:label "V (LarterBreakspear state variable)" ; "V" ; "Derivative(V, t)" ; "t_scale*(I_ext*a_ne - Q_Z*Z*a_ie - W*g_K*(V - V_K) - g_L*(V - V_L) + m_Ca*(V - V_Ca)*(-C*a_ee*c_pop0*r_NMDA - a_ee*r_NMDA*(1.0 - C)*(Q_V + lc_0) - g_Ca) - (V - V_Na)*(C*a_ee*c_pop0 + a_ee*(1.0 - C)*(Q_V + lc_0) + g_Na*m_Na))" . ### https://w3id.org/tvbo/LarterBreakspear/state_variables/W rdf:type owl:NamedIndividual , ; "Second state-variable of the Larter-Breakspear (Breakspear et al" ; ; rdfs:label "W (LarterBreakspear state variable)" ; "W" ; "Derivative(W, t)" ; "phi*t_scale*(-W + m_K)/tau_K" . ### https://w3id.org/tvbo/LarterBreakspear/state_variables/Z rdf:type owl:NamedIndividual , ; "Third state-variable of the Larter-Breakspear (Breakspear et al" ; , ; rdfs:label "Z (LarterBreakspear state variable)" ; "Z" ; "Derivative(Z, t)" ; "b*t_scale*(I_ext*a_ni + Q_V*V*a_ei)" . ### https://w3id.org/tvbo/ModelJansen1995/derived_variables/v_pyr rdf:type owl:NamedIndividual , ; "EEG-like output: pyramidal potential difference" ; rdfs:label "v_pyr (ModelJansen1995 derived variable)" ; "v_pyr" ; "y1 - y2" . ### https://w3id.org/tvbo/ModelJansen1995/parameters/A rdf:type owl:NamedIndividual , ; "3.25"^^xsd:double ; rdfs:label "A (ModelJansen1995 parameter)" ; "A" ; "mV" . ### https://w3id.org/tvbo/ModelJansen1995/parameters/B rdf:type owl:NamedIndividual , ; 22 ; rdfs:label "B (ModelJansen1995 parameter)" ; "B" ; "mV" . ### https://w3id.org/tvbo/ModelJansen1995/parameters/C rdf:type owl:NamedIndividual , ; 135 ; rdfs:label "C (ModelJansen1995 parameter)" ; "C" . ### https://w3id.org/tvbo/ModelJansen1995/parameters/a rdf:type owl:NamedIndividual , ; "0.1"^^xsd:double ; rdfs:label "a (ModelJansen1995 parameter)" ; "a" ; "per_ms" . ### https://w3id.org/tvbo/ModelJansen1995/parameters/b rdf:type owl:NamedIndividual , ; "0.05"^^xsd:double ; rdfs:label "b (ModelJansen1995 parameter)" ; "b" ; "per_ms" . ### https://w3id.org/tvbo/ModelJansen1995/parameters/e0 rdf:type owl:NamedIndividual , ; "0.0025"^^xsd:double ; rdfs:label "e0 (ModelJansen1995 parameter)" ; "e0" ; "per_ms" . ### https://w3id.org/tvbo/ModelJansen1995/parameters/p rdf:type owl:NamedIndividual , ; "0.24"^^xsd:double ; rdfs:label "p (ModelJansen1995 parameter)" ; "p" ; "per_ms" . ### https://w3id.org/tvbo/ModelJansen1995/parameters/r rdf:type owl:NamedIndividual , ; "0.56"^^xsd:double ; rdfs:label "r (ModelJansen1995 parameter)" ; "r" ; "per_mV" . ### https://w3id.org/tvbo/ModelJansen1995/parameters/v0 rdf:type owl:NamedIndividual , ; 6 ; rdfs:label "v0 (ModelJansen1995 parameter)" ; "v0" ; "mV" . ### https://w3id.org/tvbo/ModelJansen1995/state_variables/y0 rdf:type owl:NamedIndividual , ; rdfs:label "y0 (ModelJansen1995 state variable)" ; "y0" ; "y3" . ### https://w3id.org/tvbo/ModelJansen1995/state_variables/y1 rdf:type owl:NamedIndividual , ; rdfs:label "y1 (ModelJansen1995 state variable)" ; "y1" ; "y4" . ### https://w3id.org/tvbo/ModelJansen1995/state_variables/y2 rdf:type owl:NamedIndividual , ; rdfs:label "y2 (ModelJansen1995 state variable)" ; "y2" ; "y5" . ### https://w3id.org/tvbo/ModelJansen1995/state_variables/y3 rdf:type owl:NamedIndividual , ; rdfs:label "y3 (ModelJansen1995 state variable)" ; "y3" ; "A*a*Sigm(y1 - y2) - 2*a*y3 - a**2*y0" . ### https://w3id.org/tvbo/ModelJansen1995/state_variables/y4 rdf:type owl:NamedIndividual , ; rdfs:label "y4 (ModelJansen1995 state variable)" ; "y4" ; "A*a*(p + C2*Sigm(C1*y0) + c_glob) - 2*a*y4 - a**2*y1" . ### https://w3id.org/tvbo/ModelJansen1995/state_variables/y5 rdf:type owl:NamedIndividual , ; rdfs:label "y5 (ModelJansen1995 state variable)" ; "y5" ; "B*b*(C4*Sigm(C3*y0)) - 2*b*y5 - b**2*y2" . ### https://w3id.org/tvbo/MontbrioPazoRoxin/parameters/Delta rdf:type owl:NamedIndividual , ; "Mean heterogeneous noise" ; "1.0"^^xsd:double ; ; rdfs:label "Delta (MontbrioPazoRoxin parameter)" ; "Mean heterogeneous noise" ; "Delta" . ### https://w3id.org/tvbo/MontbrioPazoRoxin/parameters/I rdf:type owl:NamedIndividual , ; "External Current" ; "0.0"^^xsd:double ; rdfs:label "I (MontbrioPazoRoxin parameter)" ; "External Current" ; "I" . ### https://w3id.org/tvbo/MontbrioPazoRoxin/parameters/J rdf:type owl:NamedIndividual , ; "Mean Synaptic weight" ; "15.0"^^xsd:double ; , ; rdfs:label "J (MontbrioPazoRoxin parameter)" ; "Mean Synaptic weight." ; "J" . ### https://w3id.org/tvbo/MontbrioPazoRoxin/parameters/cr rdf:type owl:NamedIndividual , ; "It is the weight on Coupling through variable r" ; "1.0"^^xsd:double ; rdfs:label "cr (MontbrioPazoRoxin parameter)" ; "It is the weight on Coupling through variable r." ; "cr" . ### https://w3id.org/tvbo/MontbrioPazoRoxin/parameters/cv rdf:type owl:NamedIndividual , ; "It is the weight on Coupling through variable V" ; "0.0"^^xsd:double ; rdfs:label "cv (MontbrioPazoRoxin parameter)" ; "It is the weight on Coupling through variable V." ; "cv" . ### https://w3id.org/tvbo/MontbrioPazoRoxin/parameters/eta rdf:type owl:NamedIndividual , ; "Constant parameter to scale the rate of feedback from the firing rate variable to itself" ; "-5.0"^^xsd:double ; ; rdfs:label "eta (MontbrioPazoRoxin parameter)" ; "Constant parameter to scale the rate of feedback from the firing rate variable to itself" ; "eta" . ### https://w3id.org/tvbo/MontbrioPazoRoxin/parameters/tau rdf:type owl:NamedIndividual , ; "Membrane time constant" ; "1.0"^^xsd:double ; rdfs:label "tau (MontbrioPazoRoxin parameter)" ; "Membrane time constant" ; "tau" . ### https://w3id.org/tvbo/MontbrioPazoRoxin/state_variables/V rdf:type owl:NamedIndividual , ; rdfs:label "V (MontbrioPazoRoxin state variable)" ; "V" ; "Derivative(V, t)" ; "(I + J*r*tau + V**2 + c_pop0*cr*tau + c_pop1*cv + eta - pi**2*r**2*tau**2)/tau" . ### https://w3id.org/tvbo/MontbrioPazoRoxin/state_variables/r rdf:type owl:NamedIndividual , ; rdfs:label "r (MontbrioPazoRoxin state variable)" ; "r" ; "Derivative(r, t)" ; "(Delta/(pi*tau) + 2*V*r)/tau" . ### https://w3id.org/tvbo/ReducedWongWang/derived_variables/H rdf:type owl:NamedIndividual , ; "Sigmoid input-output function of the synaptic input current, x_RWW, that computes the averaged firing rate of the neurons population (Deco et al., 2013)." ; ; rdfs:label "H (ReducedWongWang derived variable)" ; "H" ; "H" ; "(a*x - b)/(1 - exp(-d*(a*x - b)))" . ### https://w3id.org/tvbo/ReducedWongWang/derived_variables/x rdf:type owl:NamedIndividual , ; "(NMDAR)-mediated synaptic input current to the neurons population (Deco et al., 2013)." ; rdfs:label "x (ReducedWongWang derived variable)" ; "x" ; "x" ; "I_o + J_N*S*local_coupling + J_N*S*w + J_N*c_pop0" . ### https://w3id.org/tvbo/ReducedWongWang/parameters/I_o rdf:type owl:NamedIndividual , ; "External input current to the neurons population (Deco et al" ; "0.33"^^xsd:double ; rdfs:label "I_o (ReducedWongWang parameter)" ; """External input current to the neurons population (Deco et al., 2013). Note: ------ In TVB, the default value is set to 0.33 (instead of 0.30 as in Deco et al. (2013)) for setting the system is bistability (see Hansen et al., 2015).""" ; "I_o" ; "nA" . ### https://w3id.org/tvbo/ReducedWongWang/parameters/J_N rdf:type owl:NamedIndividual , ; "Excitatory recurrence" ; "0.2609"^^xsd:double ; ; rdfs:label "J_N (ReducedWongWang parameter)" ; "Excitatory recurrence" ; "J_N" ; "nA" . ### https://w3id.org/tvbo/ReducedWongWang/parameters/a rdf:type owl:NamedIndividual , ; "Slope (or gain) parameter of the sigmoid input-output function H_RWW (Deco et al" ; "0.27"^^xsd:double ; rdfs:label "a (ReducedWongWang parameter)" ; """Slope (or gain) parameter of the sigmoid input-output function H_RWW (Deco et al., 2013). Note: ----- In the original publication, the parameter 'a' is set in (nC)^-1 (i.e., equivalent to (nA.s)^-1). In TVB, the parameter has been converted in (pC)^-1 for setting the system in millisecond.""" ; "a" ; "per_pC" . ### https://w3id.org/tvbo/ReducedWongWang/parameters/b rdf:type owl:NamedIndividual , ; "Shift parameter of the sigmoid input-output function H_RWW (Deco et al" ; "0.108"^^xsd:double ; rdfs:label "b (ReducedWongWang parameter)" ; """Shift parameter of the sigmoid input-output function H_RWW (Deco et al., 2013). Note: ------ In the original publication, the parameter 'b' is set in Hz. In TVB, the parameter has been converted in kHz for setting the system in millisecond.""" ; "b" ; "kHz" . ### https://w3id.org/tvbo/ReducedWongWang/parameters/d rdf:type owl:NamedIndividual , ; "Scaling parameter of the sigmoid input-output function H_RWW (Deco et al" ; "154.0"^^xsd:double ; rdfs:label "d (ReducedWongWang parameter)" ; """Scaling parameter of the sigmoid input-output function H_RWW (Deco et al., 2013). Note: ------ In the original publication, the parameter 'd' is set in second. In TVB, the parameter has been converted in millisecond for setting the system in millisecond.""" ; "d" ; "ms" . ### https://w3id.org/tvbo/ReducedWongWang/parameters/gamma rdf:type owl:NamedIndividual , ; "Kinetic parameter" ; "0.641"^^xsd:double ; rdfs:label "gamma (ReducedWongWang parameter)" ; "Kinetic parameter" ; "gamma" . ### https://w3id.org/tvbo/ReducedWongWang/parameters/tau_s rdf:type owl:NamedIndividual , ; "Kinetic parameter" ; "100.0"^^xsd:double ; rdfs:label "tau_s (ReducedWongWang parameter)" ; "Kinetic parameter. Decay time constant for the NMDA synapses of the neurons population (Deco et al., 2013)." ; "tau_s" ; "ms" . ### https://w3id.org/tvbo/ReducedWongWang/parameters/w rdf:type owl:NamedIndividual , ; "Excitatory recurrence" ; "0.6"^^xsd:double ; rdfs:label "w (ReducedWongWang parameter)" ; "Excitatory recurrence" ; "w" ; "dimensionless" . ### https://w3id.org/tvbo/ReducedWongWang/state_variables/S rdf:type owl:NamedIndividual , ; "State-variable of the Reduced WongWang model, denoting the average, (NMDAR)-mediated synaptic gating, i" ; rdfs:label "S (ReducedWongWang state variable)" ; "S" ; "Derivative(S, t)" ; "H*gamma*(1 - S) - S/tau_s" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/derived_variables/H_e rdf:type owl:NamedIndividual , ; "Sigmoid function that computes the averaged firing rate of the excitatory neuron population IE_RWW_EI (Deco et al., 2014; Abbott & Chance, 2005)." ; , ; rdfs:label "H_e (ReducedWongWangExcInh derived variable)" ; "H_e" ; "H_e" ; "x_e/(1 - exp(-d_e*x_e))" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/derived_variables/H_i rdf:type owl:NamedIndividual , ; "Sigmoid function that computes the averaged firing rate of the inhibitory neuron population II_RWW (Deco et al., 2014; Abbott & Chance, 2005)." ; , ; rdfs:label "H_i (ReducedWongWangExcInh derived variable)" ; "H_i" ; "H_i" ; "x_i/(1 - exp(-d_i*x_i))" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/derived_variables/J_N_S_e rdf:type owl:NamedIndividual , ; rdfs:label "J_N_S_e (ReducedWongWangExcInh derived variable)" ; "J_N_S_e" ; "J_N_S_e" ; "J_N*S_e" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/derived_variables/coupling rdf:type owl:NamedIndividual , ; rdfs:label "coupling (ReducedWongWangExcInh derived variable)" ; "coupling" ; "coupling" ; "G*J_N*(S_e*local_coupling + c_glob)" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/derived_variables/x_e rdf:type owl:NamedIndividual , ; "Input current to the excitatory population (Deco et al., 2014)." ; ; rdfs:label "x_e (ReducedWongWangExcInh derived variable)" ; "x_e" ; "x_e" ; "a_e*(I_ext + I_o*W_e + J_N_S_e*w_p - J_i*S_i + coupling) - b_e" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/derived_variables/x_i rdf:type owl:NamedIndividual , ; "Input current to the inhibitory population (Deco et al., 2014)." ; ; rdfs:label "x_i (ReducedWongWangExcInh derived variable)" ; "x_i" ; "x_i" ; "a_i*(I_o*W_i + J_N_S_e - S_i + coupling*lamda) - b_i" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/G rdf:type owl:NamedIndividual , ; "Global coupling scaling" ; "2.0"^^xsd:double ; rdfs:label "G (ReducedWongWangExcInh parameter)" ; "Global coupling scaling" ; "G" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/I_ext rdf:type owl:NamedIndividual , ; "External stimulation parameter for evoked potential simulated activity applied to the excitatory population firing rate IE (Deco et al" ; "0.0"^^xsd:double ; , ; rdfs:label "I_ext (ReducedWongWangExcInh parameter)" ; "External stimulation parameter for evoked potential simulated activity applied to the excitatory population firing rate IE (Deco et al., 2014)." ; "I_ext" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/I_o rdf:type owl:NamedIndividual , ; "Effective external input parameter to the excitatory E and inhibitory I population (Deco et al" ; "0.382"^^xsd:double ; , ; rdfs:label "I_o (ReducedWongWangExcInh parameter)" ; "Effective external input parameter to the excitatory E and inhibitory I population (Deco et al., 2014)." ; "I_o" ; "nA" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/J_N rdf:type owl:NamedIndividual , ; "Excitatory synaptic coupling parameter (Deco et al" ; "0.15"^^xsd:double ; ; rdfs:label "J_N (ReducedWongWangExcInh parameter)" ; "Excitatory synaptic coupling parameter (Deco et al., 2014)." ; "J_N" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/J_i rdf:type owl:NamedIndividual , ; "Local feedback inhibitory synaptic coupling to the excitatory population firing rate IE (Deco et al" ; "1.0"^^xsd:double ; , ; rdfs:label "J_i (ReducedWongWangExcInh parameter)" ; "Local feedback inhibitory synaptic coupling to the excitatory population firing rate IE (Deco et al., 2014)." ; "J_i" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/W_e rdf:type owl:NamedIndividual , ; "Excitatory population external input scaling weight" ; "1.0"^^xsd:double ; , ; rdfs:label "W_e (ReducedWongWangExcInh parameter)" ; "Excitatory population external input scaling weight" ; "W_e" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/W_i rdf:type owl:NamedIndividual , ; "Inhibitory population external input scaling weight" ; "0.7"^^xsd:double ; ; rdfs:label "W_i (ReducedWongWangExcInh parameter)" ; "Inhibitory population external input scaling weight" ; "W_i" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/a_e rdf:type owl:NamedIndividual , ; "Slope (or gain) parameter of the sigmoid function HE_RWW_EI (Deco et al" ; "310.0"^^xsd:double ; rdfs:label "a_e (ReducedWongWangExcInh parameter)" ; "Slope (or gain) parameter of the sigmoid function HE_RWW_EI (Deco et al., 2014)." ; "a_e" ; "per_nC" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/a_i rdf:type owl:NamedIndividual , ; "Slope (or gain) parameter of the sigmoid function HI_RWW_EI of the inhibitory population (Deco et al" ; "615.0"^^xsd:double ; rdfs:label "a_i (ReducedWongWangExcInh parameter)" ; "Slope (or gain) parameter of the sigmoid function HI_RWW_EI of the inhibitory population (Deco et al., 2014)." ; "a_i" ; "per_nC" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/b_e rdf:type owl:NamedIndividual , ; "Shift parameter of the sigmoid function HE_RWW_EI of the excitatory population (Deco et al" ; "125.0"^^xsd:double ; rdfs:label "b_e (ReducedWongWangExcInh parameter)" ; "Shift parameter of the sigmoid function HE_RWW_EI of the excitatory population (Deco et al., 2014)." ; "b_e" ; "Hz" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/b_i rdf:type owl:NamedIndividual , ; "Shift parameter of the sigmoid function HI_RWW_EI of the inhibitory population (Deco et al" ; "177.0"^^xsd:double ; rdfs:label "b_i (ReducedWongWangExcInh parameter)" ; "Shift parameter of the sigmoid function HI_RWW_EI of the inhibitory population (Deco et al., 2014)." ; "b_i" ; "Hz" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/d_e rdf:type owl:NamedIndividual , ; "Scaling parameter of the sigmoid function HE_RWW_EI of the excitatory population (Deco et al" ; "0.16"^^xsd:double ; rdfs:label "d_e (ReducedWongWangExcInh parameter)" ; "Scaling parameter of the sigmoid function HE_RWW_EI of the excitatory population (Deco et al., 2014)." ; "d_e" ; "s" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/d_i rdf:type owl:NamedIndividual , ; "Scaling parameter of the sigmoid function HI_RWW_EI of the inhibitory population (Deco et al" ; "0.087"^^xsd:double ; rdfs:label "d_i (ReducedWongWangExcInh parameter)" ; "Scaling parameter of the sigmoid function HI_RWW_EI of the inhibitory population (Deco et al., 2014)." ; "d_i" ; "s" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/gamma_e rdf:type owl:NamedIndividual , ; "Excitatory population kinetic parameter" ; "6.41E-4"^^xsd:double ; ; rdfs:label "gamma_e (ReducedWongWangExcInh parameter)" ; "Excitatory population kinetic parameter" ; "gamma_e" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/gamma_i rdf:type owl:NamedIndividual , ; "Inhibitory population kinetic parameter" ; "0.001"^^xsd:double ; ; rdfs:label "gamma_i (ReducedWongWangExcInh parameter)" ; "Inhibitory population kinetic parameter" ; "gamma_i" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/lamda rdf:type owl:NamedIndividual , ; "Inhibitory global coupling scaling" ; "0.0"^^xsd:double ; ; rdfs:label "lamda (ReducedWongWangExcInh parameter)" ; "Inhibitory global coupling scaling" ; "lamda" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/tau_e rdf:type owl:NamedIndividual , ; "Kinetic parameter that represents the decay times for NMDA synapses (Deco et al" ; "100.0"^^xsd:double ; rdfs:label "tau_e (ReducedWongWangExcInh parameter)" ; "Kinetic parameter that represents the decay times for NMDA synapses (Deco et al., 2014). Excitatory population NMDA decay time constant." ; "tau_e" ; "ms" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/tau_i rdf:type owl:NamedIndividual , ; "Kinetic parameter that represents the decay times for inhibitory GABA synapses (Deco et al" ; "10.0"^^xsd:double ; ; rdfs:label "tau_i (ReducedWongWangExcInh parameter)" ; "Kinetic parameter that represents the decay times for inhibitory GABA synapses (Deco et al., 2014)." ; "tau_i" ; "ms" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/parameters/w_p rdf:type owl:NamedIndividual , ; "Excitatory population recurrence weight" ; "1.4"^^xsd:double ; ; rdfs:label "w_p (ReducedWongWangExcInh parameter)" ; "Excitatory population recurrence weight" ; "w_p" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/state_variables/S_e rdf:type owl:NamedIndividual , ; "State-variable of the Reduced WongWang_EI model (Deco et al" ; , ; rdfs:label "S_e (ReducedWongWangExcInh state variable)" ; "S_e" ; "Derivative(S_e, t)" ; "H_e*gamma_e*(1 - S_e) - S_e/tau_e" . ### https://w3id.org/tvbo/ReducedWongWangExcInh/state_variables/S_i rdf:type owl:NamedIndividual , ; "State-variable of the Reduced WongWang_EI model (Deco et al" ; , ; rdfs:label "S_i (ReducedWongWangExcInh state variable)" ; "S_i" ; "Derivative(S_i, t)" ; "H_i*gamma_i - S_i/tau_i" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/derived_variables/H_x rdf:type owl:NamedIndividual , ; "Average population firing rate H evaluated at the total synaptic input x." ; rdfs:label "H_x (ReducedWongWangTvboptim derived variable)" ; "H_x" ; "H_x" ; "H(x)" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/derived_variables/x rdf:type owl:NamedIndividual , ; "Total synaptic input current combining local recurrence, external input, and network coupling (instant and delayed) scaled by J_N." ; rdfs:label "x (ReducedWongWangTvboptim derived variable)" ; "x" ; "x" ; "w*J_N*S + I_o + J_N*instant + J_N*delayed" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/parameters/I_o rdf:type owl:NamedIndividual , ; "External input current" ; "0.34"^^xsd:double ; rdfs:label "I_o (ReducedWongWangTvboptim parameter)" ; "Effective external input current to each cortical population. Default 0.34 nA sets the system in bistability (Hansen et al., 2015). Together with w, this is a key parameter for fitting functional connectivity." ; "I_o" ; "nA" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/parameters/J_N rdf:type owl:NamedIndividual , ; "NMDA synaptic coupling strength" ; "0.2609"^^xsd:double ; rdfs:label "J_N (ReducedWongWangTvboptim parameter)" ; "NMDA synaptic coupling strength. Scales both local recurrence and long-range network coupling inputs." ; "J_N" ; "nA" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/parameters/a rdf:type owl:NamedIndividual , ; "Input gain parameter" ; "0.27"^^xsd:double ; rdfs:label "a (ReducedWongWangTvboptim parameter)" ; "Input gain parameter of the sigmoid transfer function H(x)." ; "a" ; "per_pC" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/parameters/b rdf:type owl:NamedIndividual , ; "Input shift parameter" ; "0.108"^^xsd:double ; rdfs:label "b (ReducedWongWangTvboptim parameter)" ; "Input shift parameter of the sigmoid transfer function H(x)." ; "b" ; "kHz" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/parameters/d rdf:type owl:NamedIndividual , ; "Scaling parameter" ; "154.0"^^xsd:double ; rdfs:label "d (ReducedWongWangTvboptim parameter)" ; "Scaling parameter of the sigmoid transfer function H(x)." ; "d" ; "ms" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/parameters/gamma rdf:type owl:NamedIndividual , ; "Kinetic parameter" ; "0.641"^^xsd:double ; rdfs:label "gamma (ReducedWongWangTvboptim parameter)" ; "Kinetic parameter governing the rate of NMDA channel dynamics." ; "gamma" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/parameters/tau_s rdf:type owl:NamedIndividual , ; "NMDA decay time constant" ; "100.0"^^xsd:double ; rdfs:label "tau_s (ReducedWongWangTvboptim parameter)" ; "NMDA decay time constant for the synaptic gating variable S." ; "tau_s" ; "ms" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/parameters/w rdf:type owl:NamedIndividual , ; "Excitatory recurrence strength (local feedback)" ; "0.5"^^xsd:double ; rdfs:label "w (ReducedWongWangTvboptim parameter)" ; "Local excitatory recurrence strength. Controls the positive feedback within each cortical population. Higher values increase local excitation and push the system toward higher firing rates." ; "w" ; "dimensionless" . ### https://w3id.org/tvbo/ReducedWongWangTvboptim/state_variables/S rdf:type owl:NamedIndividual , ; "Average NMDA synaptic gating variable, representing the fraction of open NMDA channels at each network node." ; rdfs:label "S (ReducedWongWangTvboptim state variable)" ; "S" ; "Derivative(S, t)" ; "-S/tau_s + (1 - S)*H(x)*gamma" . ### https://w3id.org/tvbo/StefanescuJirsa2D/derived_variables/Aik rdf:type owl:NamedIndividual , ; "Excitatory-to-excitatory mode-coupling matrix derived from Gaussian quadrature over N(mu, sigma); computed offline at `update_derived_parameters`." ; ; rdfs:label "Aik (StefanescuJirsa2D derived variable)" ; "Aik" ; "Aik" ; "0.5" . ### https://w3id.org/tvbo/StefanescuJirsa2D/derived_variables/Bik rdf:type owl:NamedIndividual , ; "Inhibitory-to-excitatory mode-coupling matrix." ; ; rdfs:label "Bik (StefanescuJirsa2D derived variable)" ; "Bik" ; "Bik" ; "0.5" . ### https://w3id.org/tvbo/StefanescuJirsa2D/derived_variables/Cik rdf:type owl:NamedIndividual , ; "Excitatory-to-inhibitory mode-coupling matrix." ; ; rdfs:label "Cik (StefanescuJirsa2D derived variable)" ; "Cik" ; "Cik" ; "0.5" . ### https://w3id.org/tvbo/StefanescuJirsa2D/derived_variables/IE_i rdf:type owl:NamedIndividual , ; "Per-mode constant excitatory input from the heterogeneity distribution." ; ; rdfs:label "IE_i (StefanescuJirsa2D derived variable)" ; "IE_i" ; "IE_i" ; "0.0" . ### https://w3id.org/tvbo/StefanescuJirsa2D/derived_variables/II_i rdf:type owl:NamedIndividual , ; "Per-mode constant inhibitory input from the heterogeneity distribution." ; ; rdfs:label "II_i (StefanescuJirsa2D derived variable)" ; "II_i" ; "II_i" ; "0.0" . ### https://w3id.org/tvbo/StefanescuJirsa2D/derived_variables/e_i rdf:type owl:NamedIndividual , ; "Per-mode cubic-coefficient projection for the excitatory subnetwork." ; rdfs:label "e_i (StefanescuJirsa2D derived variable)" ; "e_i" ; "e_i" ; "1.0" . ### https://w3id.org/tvbo/StefanescuJirsa2D/derived_variables/f_i rdf:type owl:NamedIndividual , ; "Per-mode cubic-coefficient projection for the inhibitory subnetwork." ; rdfs:label "f_i (StefanescuJirsa2D derived variable)" ; "f_i" ; "f_i" ; "1.0" . ### https://w3id.org/tvbo/StefanescuJirsa2D/derived_variables/m_i rdf:type owl:NamedIndividual , ; "Per-mode offset entering the eta dynamics." ; rdfs:label "m_i (StefanescuJirsa2D derived variable)" ; "m_i" ; "m_i" ; "a" . ### https://w3id.org/tvbo/StefanescuJirsa2D/derived_variables/n_i rdf:type owl:NamedIndividual , ; "Per-mode offset entering the beta dynamics." ; rdfs:label "n_i (StefanescuJirsa2D derived variable)" ; "n_i" ; "n_i" ; "a" . ### https://w3id.org/tvbo/StefanescuJirsa2D/parameters/K11 rdf:type owl:NamedIndividual , ; "0.5"^^xsd:double ; ; rdfs:label "K11 (StefanescuJirsa2D parameter)" ; "Internal coupling, excitatory to excitatory." ; "K11" . ### https://w3id.org/tvbo/StefanescuJirsa2D/parameters/K12 rdf:type owl:NamedIndividual , ; "0.15"^^xsd:double ; ; rdfs:label "K12 (StefanescuJirsa2D parameter)" ; "Internal coupling, inhibitory to excitatory." ; "K12" . ### https://w3id.org/tvbo/StefanescuJirsa2D/parameters/K21 rdf:type owl:NamedIndividual , ; "0.15"^^xsd:double ; ; rdfs:label "K21 (StefanescuJirsa2D parameter)" ; "Internal coupling, excitatory to inhibitory." ; "K21" . ### https://w3id.org/tvbo/StefanescuJirsa2D/parameters/a rdf:type owl:NamedIndividual , ; "0.45"^^xsd:double ; rdfs:label "a (StefanescuJirsa2D parameter)" ; "Heterogeneity scale parameter entering the m_i, n_i offsets." ; "a" . ### https://w3id.org/tvbo/StefanescuJirsa2D/parameters/b rdf:type owl:NamedIndividual , ; "0.9"^^xsd:double ; rdfs:label "b (StefanescuJirsa2D parameter)" ; "FitzHugh-Nagumo recovery decay rate." ; "b" . ### https://w3id.org/tvbo/StefanescuJirsa2D/parameters/mu rdf:type owl:NamedIndividual , ; "0.0"^^xsd:double ; ; rdfs:label "mu (StefanescuJirsa2D parameter)" ; "Mean of the Gaussian heterogeneity distribution." ; "mu" . ### https://w3id.org/tvbo/StefanescuJirsa2D/parameters/sigma rdf:type owl:NamedIndividual , ; "0.35"^^xsd:double ; ; rdfs:label "sigma (StefanescuJirsa2D parameter)" ; "Standard deviation of the Gaussian heterogeneity distribution." ; "sigma" . ### https://w3id.org/tvbo/StefanescuJirsa2D/parameters/tau rdf:type owl:NamedIndividual , ; "Timescale separation" ; "3.0"^^xsd:double ; rdfs:label "tau (StefanescuJirsa2D parameter)" ; "Timescale separation between fast (xi, alpha) and slow (eta, beta) variables." ; "tau" . ### https://w3id.org/tvbo/StefanescuJirsa2D/state_variables/alpha rdf:type owl:NamedIndividual , ; "Inhibitory fast variable (per mode)." ; ; rdfs:label "alpha (StefanescuJirsa2D state variable)" ; "alpha" ; "Derivative(alpha, t)" ; "tau*(alpha - f_i*alpha**3/3 - beta) + K21*(Cik*xi - alpha) + tau*(II_i + c_pop0 + local_coupling*xi)" . ### https://w3id.org/tvbo/StefanescuJirsa2D/state_variables/beta rdf:type owl:NamedIndividual , ; "Inhibitory slow recovery variable (per mode)." ; ; rdfs:label "beta (StefanescuJirsa2D state variable)" ; "beta" ; "Derivative(beta, t)" ; "(alpha - b*beta + n_i)/tau" . ### https://w3id.org/tvbo/StefanescuJirsa2D/state_variables/eta rdf:type owl:NamedIndividual , ; "Excitatory slow recovery variable (per mode)." ; ; rdfs:label "eta (StefanescuJirsa2D state variable)" ; "eta" ; "Derivative(eta, t)" ; "(xi - b*eta + m_i)/tau" . ### https://w3id.org/tvbo/StefanescuJirsa2D/state_variables/xi rdf:type owl:NamedIndividual , ; "Excitatory fast variable (per mode)." ; ; rdfs:label "xi (StefanescuJirsa2D state variable)" ; "xi" ; "Derivative(xi, t)" ; "tau*(xi - e_i*xi**3/3 - eta) + K11*(Aik*xi - xi) - K12*(Bik*alpha - xi) + tau*(IE_i + c_pop0 + local_coupling*xi)" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/A_ik rdf:type owl:NamedIndividual , ; "Excitatory-to-excitatory mode-coupling matrix from Gaussian quadrature." ; ; rdfs:label "A_ik (StefanescuJirsa3D derived variable)" ; "A_ik" ; "A_ik" ; "0.5" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/B_ik rdf:type owl:NamedIndividual , ; "Inhibitory-to-excitatory mode-coupling matrix." ; ; rdfs:label "B_ik (StefanescuJirsa3D derived variable)" ; "B_ik" ; "B_ik" ; "0.5" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/C_ik rdf:type owl:NamedIndividual , ; "Excitatory-to-inhibitory mode-coupling matrix." ; ; rdfs:label "C_ik (StefanescuJirsa3D derived variable)" ; "C_ik" ; "C_ik" ; "0.5" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/IE_i rdf:type owl:NamedIndividual , ; "Per-mode constant excitatory input." ; ; rdfs:label "IE_i (StefanescuJirsa3D derived variable)" ; "IE_i" ; "IE_i" ; "0.0" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/II_i rdf:type owl:NamedIndividual , ; "Per-mode constant inhibitory input." ; ; rdfs:label "II_i (StefanescuJirsa3D derived variable)" ; "II_i" ; "II_i" ; "0.0" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/a_i rdf:type owl:NamedIndividual , ; "Per-mode cubic coefficient for the excitatory xi dynamics (a * )." ; rdfs:label "a_i (StefanescuJirsa3D derived variable)" ; "a_i" ; "a_i" ; "a" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/b_i rdf:type owl:NamedIndividual , ; "Per-mode quadratic coefficient for the excitatory xi dynamics." ; rdfs:label "b_i (StefanescuJirsa3D derived variable)" ; "b_i" ; "b_i" ; "b" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/c_i rdf:type owl:NamedIndividual , ; "Per-mode constant for the excitatory eta dynamics." ; rdfs:label "c_i (StefanescuJirsa3D derived variable)" ; "c_i" ; "c_i" ; "c" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/d_i rdf:type owl:NamedIndividual , ; "Per-mode quadratic coefficient for the excitatory eta dynamics." ; ; rdfs:label "d_i (StefanescuJirsa3D derived variable)" ; "d_i" ; "d_i" ; "d" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/e_i rdf:type owl:NamedIndividual , ; "Per-mode cubic coefficient for the inhibitory alpha dynamics." ; rdfs:label "e_i (StefanescuJirsa3D derived variable)" ; "e_i" ; "e_i" ; "a" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/f_i rdf:type owl:NamedIndividual , ; "Per-mode quadratic coefficient for the inhibitory alpha dynamics." ; rdfs:label "f_i (StefanescuJirsa3D derived variable)" ; "f_i" ; "f_i" ; "b" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/h_i rdf:type owl:NamedIndividual , ; "Per-mode constant for the inhibitory beta dynamics." ; rdfs:label "h_i (StefanescuJirsa3D derived variable)" ; "h_i" ; "h_i" ; "c" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/m_i rdf:type owl:NamedIndividual , ; "Per-mode adaptation offset entering the tau dynamics." ; rdfs:label "m_i (StefanescuJirsa3D derived variable)" ; "m_i" ; "m_i" ; "r*s*x_0" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/n_i rdf:type owl:NamedIndividual , ; "Per-mode adaptation offset entering the gamma dynamics." ; rdfs:label "n_i (StefanescuJirsa3D derived variable)" ; "n_i" ; "n_i" ; "r*s*x_0" . ### https://w3id.org/tvbo/StefanescuJirsa3D/derived_variables/p_i rdf:type owl:NamedIndividual , ; "Per-mode quadratic coefficient for the inhibitory beta dynamics." ; ; rdfs:label "p_i (StefanescuJirsa3D derived variable)" ; "p_i" ; "p_i" ; "d" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/K_11 rdf:type owl:NamedIndividual , ; "0.5"^^xsd:double ; ; rdfs:label "K_11 (StefanescuJirsa3D parameter)" ; "Internal coupling, excitatory to excitatory." ; "K_11" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/K_12 rdf:type owl:NamedIndividual , ; "0.1"^^xsd:double ; ; rdfs:label "K_12 (StefanescuJirsa3D parameter)" ; "Internal coupling, inhibitory to excitatory." ; "K_12" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/K_21 rdf:type owl:NamedIndividual , ; "0.15"^^xsd:double ; ; rdfs:label "K_21 (StefanescuJirsa3D parameter)" ; "Internal coupling, excitatory to inhibitory." ; "K_21" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/a rdf:type owl:NamedIndividual , ; "1.0"^^xsd:double ; rdfs:label "a (StefanescuJirsa3D parameter)" ; "Hindmarsh-Rose dimensionless coefficient a." ; "a" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/b rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "b (StefanescuJirsa3D parameter)" ; "Hindmarsh-Rose dimensionless coefficient b." ; "b" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/c rdf:type owl:NamedIndividual , ; "1.0"^^xsd:double ; rdfs:label "c (StefanescuJirsa3D parameter)" ; "Hindmarsh-Rose dimensionless coefficient c." ; "c" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/d rdf:type owl:NamedIndividual , ; "5.0"^^xsd:double ; rdfs:label "d (StefanescuJirsa3D parameter)" ; "Hindmarsh-Rose dimensionless coefficient d." ; "d" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/mu rdf:type owl:NamedIndividual , ; "3.3"^^xsd:double ; ; rdfs:label "mu (StefanescuJirsa3D parameter)" ; "Mean of the Gaussian heterogeneity distribution." ; "mu" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/r rdf:type owl:NamedIndividual , ; "0.006"^^xsd:double ; rdfs:label "r (StefanescuJirsa3D parameter)" ; "Adaptation parameter (Hindmarsh-Rose r)." ; "r" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/s rdf:type owl:NamedIndividual , ; "4.0"^^xsd:double ; rdfs:label "s (StefanescuJirsa3D parameter)" ; "Adaptation feedback parameter." ; "s" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/sigma rdf:type owl:NamedIndividual , ; "0.3"^^xsd:double ; ; rdfs:label "sigma (StefanescuJirsa3D parameter)" ; "Standard deviation of the Gaussian heterogeneity distribution." ; "sigma" . ### https://w3id.org/tvbo/StefanescuJirsa3D/parameters/x_0 rdf:type owl:NamedIndividual , ; "-1.6"^^xsd:double ; ; rdfs:label "x_0 (StefanescuJirsa3D parameter)" ; "Leftmost equilibrium point of x in the Hindmarsh-Rose oscillator." ; "x_0" . ### https://w3id.org/tvbo/StefanescuJirsa3D/state_variables/alpha rdf:type owl:NamedIndividual , ; "Inhibitory fast variable (per mode)." ; ; rdfs:label "alpha (StefanescuJirsa3D state variable)" ; "alpha" ; "Derivative(alpha, t)" ; "beta - e_i*alpha**3 + f_i*alpha**2 - gamma + K_21*(C_ik*xi - alpha) + II_i + c_pop0 + local_coupling*xi" . ### https://w3id.org/tvbo/StefanescuJirsa3D/state_variables/beta rdf:type owl:NamedIndividual , ; "Inhibitory recovery variable (per mode)." ; ; rdfs:label "beta (StefanescuJirsa3D state variable)" ; "beta" ; "Derivative(beta, t)" ; "h_i - p_i*alpha**2 - beta" . ### https://w3id.org/tvbo/StefanescuJirsa3D/state_variables/eta rdf:type owl:NamedIndividual , ; "Excitatory recovery variable (per mode)." ; ; rdfs:label "eta (StefanescuJirsa3D state variable)" ; "eta" ; "Derivative(eta, t)" ; "c_i - d_i*xi**2 - eta" . ### https://w3id.org/tvbo/StefanescuJirsa3D/state_variables/gamma rdf:type owl:NamedIndividual , ; "Inhibitory slow adaptation variable (per mode)." ; ; rdfs:label "gamma (StefanescuJirsa3D state variable)" ; "gamma" ; "Derivative(gamma, t)" ; "r*s*alpha - r*gamma - n_i" . ### https://w3id.org/tvbo/StefanescuJirsa3D/state_variables/tau rdf:type owl:NamedIndividual , ; "Excitatory slow adaptation variable (per mode)." ; ; rdfs:label "tau (StefanescuJirsa3D state variable)" ; "tau" ; "Derivative(tau, t)" ; "r*s*xi - r*tau - m_i" . ### https://w3id.org/tvbo/StefanescuJirsa3D/state_variables/xi rdf:type owl:NamedIndividual , ; "Excitatory fast variable (per mode)." ; ; rdfs:label "xi (StefanescuJirsa3D state variable)" ; "xi" ; "Derivative(xi, t)" ; "eta - a_i*xi**3 + b_i*xi**2 - tau + K_11*(A_ik*xi - xi) - K_12*(B_ik*alpha - xi) + IE_i + c_pop0 + local_coupling*xi" . ### https://w3id.org/tvbo/SupHopf/derived_variables/lc_0 rdf:type owl:NamedIndividual , ; rdfs:label "lc_0 (SupHopf derived variable)" ; "lc_0" ; "lc_0" ; "local_coupling*x" . ### https://w3id.org/tvbo/SupHopf/parameters/a rdf:type owl:NamedIndividual , ; "Local bifurcation parameter" ; "-0.5"^^xsd:double ; rdfs:label "a (SupHopf parameter)" ; "Local bifurcation parameter." ; "a" . ### https://w3id.org/tvbo/SupHopf/parameters/omega rdf:type owl:NamedIndividual , ; "Angular frequency" ; "1.0"^^xsd:double ; rdfs:label "omega (SupHopf parameter)" ; "Angular frequency." ; "omega" . ### https://w3id.org/tvbo/SupHopf/state_variables/x rdf:type owl:NamedIndividual , ; "First state-variable of the Supercritical Hopf model" ; rdfs:label "x (SupHopf state variable)" ; "x" ; "Derivative(x, t)" ; "c_pop0 + lc_0 - omega*y + x*(a - x**2 - y**2)" . ### https://w3id.org/tvbo/SupHopf/state_variables/y rdf:type owl:NamedIndividual , ; "Second state-variable of the Supercritical Hopf model" ; rdfs:label "y (SupHopf state variable)" ; "y" ; "Derivative(y, t)" ; "c_pop1 + omega*x + y*(a - x**2 - y**2)" . ### https://w3id.org/tvbo/TsodyksMarkram/derived_variables/SS0 rdf:type owl:NamedIndividual , ; "Total synaptic input (recurrent + external)" ; rdfs:label "SS0 (TsodyksMarkram derived variable)" ; "SS0" ; "SS0" ; "J*u*x*E + E0" . ### https://w3id.org/tvbo/TsodyksMarkram/derived_variables/SS1 rdf:type owl:NamedIndividual , ; "Softplus transfer function output" ; rdfs:label "SS1 (TsodyksMarkram derived variable)" ; "SS1" ; "SS1" ; "alpha*log(1 + exp(SS0/alpha))" . ### https://w3id.org/tvbo/TsodyksMarkram/parameters/E0 rdf:type owl:NamedIndividual , ; "External input (baseline excitability)" ; "-2.0"^^xsd:double ; rdfs:label "E0 (TsodyksMarkram parameter)" ; "E0" . ### https://w3id.org/tvbo/TsodyksMarkram/parameters/J rdf:type owl:NamedIndividual , ; "Synaptic coupling strength" ; "3.07"^^xsd:double ; rdfs:label "J (TsodyksMarkram parameter)" ; "J" . ### https://w3id.org/tvbo/TsodyksMarkram/parameters/U0 rdf:type owl:NamedIndividual , ; "Baseline release probability" ; "0.3"^^xsd:double ; rdfs:label "U0 (TsodyksMarkram parameter)" ; "U0" . ### https://w3id.org/tvbo/TsodyksMarkram/parameters/alpha rdf:type owl:NamedIndividual , ; "Softplus nonlinearity steepness (smoothed threshold gain)" ; "1.5"^^xsd:double ; rdfs:label "alpha (TsodyksMarkram parameter)" ; "alpha" . ### https://w3id.org/tvbo/TsodyksMarkram/parameters/tau rdf:type owl:NamedIndividual , ; "Membrane time constant (firing rate relaxation)" ; "0.013"^^xsd:double ; rdfs:label "tau (TsodyksMarkram parameter)" ; "tau" . ### https://w3id.org/tvbo/TsodyksMarkram/parameters/tauD rdf:type owl:NamedIndividual , ; "Synaptic depression recovery time constant" ; "0.2"^^xsd:double ; rdfs:label "tauD (TsodyksMarkram parameter)" ; "tauD" . ### https://w3id.org/tvbo/TsodyksMarkram/parameters/tauF rdf:type owl:NamedIndividual , ; "Synaptic facilitation decay time constant" ; "1.5"^^xsd:double ; rdfs:label "tauF (TsodyksMarkram parameter)" ; "tauF" . ### https://w3id.org/tvbo/TsodyksMarkram/state_variables/E rdf:type owl:NamedIndividual , ; "Mean firing rate of the excitatory population" ; rdfs:label "E (TsodyksMarkram state variable)" ; "E" ; "Derivative(E, t)" ; "(-E + SS1)/tau" . ### https://w3id.org/tvbo/TsodyksMarkram/state_variables/u rdf:type owl:NamedIndividual , ; "Synaptic facilitation variable (release probability). Decays to U0 with time constant tauF and is enhanced proportionally to firing." ; rdfs:label "u (TsodyksMarkram state variable)" ; "u" ; "Derivative(u, t)" ; "(U0 - u)/tauF + U0*(1 - u)*E" . ### https://w3id.org/tvbo/TsodyksMarkram/state_variables/x rdf:type owl:NamedIndividual , ; "Synaptic depression variable (fraction of available neurotransmitter). Recovers to 1 with time constant tauD and is depleted proportionally to firing." ; rdfs:label "x (TsodyksMarkram state variable)" ; "x" ; "Derivative(x, t)" ; "(1 - x)/tauD - u*x*E" . ### https://w3id.org/tvbo/WilsonCowan/derived_variables/lc_0 rdf:type owl:NamedIndividual , ; rdfs:label "lc_0 (WilsonCowan derived variable)" ; "lc_0" ; "lc_0" ; "local_coupling*E" . ### https://w3id.org/tvbo/WilsonCowan/derived_variables/lc_1 rdf:type owl:NamedIndividual , ; rdfs:label "lc_1 (WilsonCowan derived variable)" ; "lc_1" ; "lc_1" ; "I*local_coupling" . ### https://w3id.org/tvbo/WilsonCowan/derived_variables/s_e rdf:type owl:NamedIndividual , ; rdfs:label "s_e (WilsonCowan derived variable)" ; "s_e" ; "s_e" ; "c_e/(1.0 + exp(-a_e*(-b_e + x_e))) - 1.0*shift_sigmoid/(exp(a_e*b_e) + 1.0)" . ### https://w3id.org/tvbo/WilsonCowan/derived_variables/s_i rdf:type owl:NamedIndividual , ; rdfs:label "s_i (WilsonCowan derived variable)" ; "s_i" ; "s_i" ; "c_i/(1.0 + exp(-a_i*(-b_i + x_i))) - 1.0*shift_sigmoid/(exp(a_i*b_i) + 1.0)" . ### https://w3id.org/tvbo/WilsonCowan/derived_variables/x_e rdf:type owl:NamedIndividual , ; "Average level of excitation in excitatory neuron at time t. Can be interpreted as membrane potential (Sanz-Leon et al., 2015)." ; ; rdfs:label "x_e (WilsonCowan derived variable)" ; "x_e" ; "x_e" ; "alpha_e*(-I*c_ei + P + c_ee*E + c_pop0 + lc_0 + lc_1 - theta_e)" . ### https://w3id.org/tvbo/WilsonCowan/derived_variables/x_i rdf:type owl:NamedIndividual , ; "Average level of excitation in inhibitory neuron at time t. Can be interpreted as membrane potential. (Sanz-Leon et al., 2015)." ; ; rdfs:label "x_i (WilsonCowan derived variable)" ; "x_i" ; "x_i" ; "alpha_i*(-I*c_ii + Q + c_ie*E + lc_0 + lc_1 - theta_i)" . ### https://w3id.org/tvbo/WilsonCowan/parameters/P rdf:type owl:NamedIndividual , ; "External stimulus to the excitatory population (Wilson and Cowan, 1972)" ; "0.0"^^xsd:double ; ; rdfs:label "P (WilsonCowan parameter)" ; "External stimulus to the excitatory population (Wilson and Cowan, 1972)." ; "P" . ### https://w3id.org/tvbo/WilsonCowan/parameters/Q rdf:type owl:NamedIndividual , ; "External stimulus to the inhibitory population (Wilson and Cowan, 1972)" ; "0.0"^^xsd:double ; ; rdfs:label "Q (WilsonCowan parameter)" ; "External stimulus to the inhibitory population (Wilson and Cowan, 1972)." ; "Q" . ### https://w3id.org/tvbo/WilsonCowan/parameters/a_e rdf:type owl:NamedIndividual , ; "Steepness of the excitatory response function S_e_WC (Wilson and Cowan, 1972)" ; "1.2"^^xsd:double ; ; rdfs:label "a_e (WilsonCowan parameter)" ; "Steepness of the excitatory response function S_e_WC (Wilson and Cowan, 1972)." ; "a_e" . ### https://w3id.org/tvbo/WilsonCowan/parameters/a_i rdf:type owl:NamedIndividual , ; "Steepness of the excitatory response function S_i_WC (Wilson and Cowan, 1972)" ; "1.0"^^xsd:double ; ; rdfs:label "a_i (WilsonCowan parameter)" ; "Steepness of the excitatory response function S_i_WC (Wilson and Cowan, 1972)." ; "a_i" . ### https://w3id.org/tvbo/WilsonCowan/parameters/alpha_e rdf:type owl:NamedIndividual , ; "Balance parameter between excitatory and inhibitory masses (Sanz-Leon et al" ; "1.0"^^xsd:double ; rdfs:label "alpha_e (WilsonCowan parameter)" ; "Balance parameter between excitatory and inhibitory masses (Sanz-Leon et al., 2015)." ; "alpha_e" . ### https://w3id.org/tvbo/WilsonCowan/parameters/alpha_i rdf:type owl:NamedIndividual , ; "Balance parameter between excitatory and inhibitory masses (Sanz-Leon et al" ; "1.0"^^xsd:double ; rdfs:label "alpha_i (WilsonCowan parameter)" ; "Balance parameter between excitatory and inhibitory masses (Sanz-Leon et al., 2015)." ; "alpha_i" . ### https://w3id.org/tvbo/WilsonCowan/parameters/b_e rdf:type owl:NamedIndividual , ; "Position of the maximum slope of the excitatory response function S_e_WC (Sanz-Leon et al" ; "2.8"^^xsd:double ; ; rdfs:label "b_e (WilsonCowan parameter)" ; "Position of the maximum slope of the excitatory response function S_e_WC (Sanz-Leon et al., 2015)." ; "b_e" . ### https://w3id.org/tvbo/WilsonCowan/parameters/b_i rdf:type owl:NamedIndividual , ; "Position of the maximum slope of a sigmoid function [in threshold units]" ; "4.0"^^xsd:double ; ; rdfs:label "b_i (WilsonCowan parameter)" ; """Position of the maximum slope of a sigmoid function [in threshold units]""" ; "b_i" . ### https://w3id.org/tvbo/WilsonCowan/parameters/c_e rdf:type owl:NamedIndividual , ; "The amplitude parameter for the excitatory response function" ; "1.0"^^xsd:double ; ; rdfs:label "c_e (WilsonCowan parameter)" ; "The amplitude parameter for the excitatory response function" ; "c_e" . ### https://w3id.org/tvbo/WilsonCowan/parameters/c_ee rdf:type owl:NamedIndividual , ; "Excitatory to excitatory coupling coefficient" ; "12.0"^^xsd:double ; ; rdfs:label "c_ee (WilsonCowan parameter)" ; "Excitatory to excitatory coupling coefficient" ; "c_ee" . ### https://w3id.org/tvbo/WilsonCowan/parameters/c_ei rdf:type owl:NamedIndividual , ; "Inhibitory to excitatory coupling coefficient" ; "4.0"^^xsd:double ; ; rdfs:label "c_ei (WilsonCowan parameter)" ; "Inhibitory to excitatory coupling coefficient" ; "c_ei" . ### https://w3id.org/tvbo/WilsonCowan/parameters/c_i rdf:type owl:NamedIndividual , ; "The amplitude parameter for the excitatory response function S_i_WC (Sanz-Leon et al" ; "1.0"^^xsd:double ; ; rdfs:label "c_i (WilsonCowan parameter)" ; "The amplitude parameter for the excitatory response function S_i_WC (Sanz-Leon et al., 2015)." ; "c_i" . ### https://w3id.org/tvbo/WilsonCowan/parameters/c_ie rdf:type owl:NamedIndividual , ; "Excitatory to inhibitory coupling coefficient (Sanz-Leon et al" ; "13.0"^^xsd:double ; ; rdfs:label "c_ie (WilsonCowan parameter)" ; "Excitatory to inhibitory coupling coefficient (Sanz-Leon et al., 2015)" ; "c_ie" . ### https://w3id.org/tvbo/WilsonCowan/parameters/c_ii rdf:type owl:NamedIndividual , ; "Inhibitory to inhibitory coupling coefficient (Sanz-Leon et al" ; "11.0"^^xsd:double ; ; rdfs:label "c_ii (WilsonCowan parameter)" ; "Inhibitory to inhibitory coupling coefficient (Sanz-Leon et al., 2015)" ; "c_ii" . ### https://w3id.org/tvbo/WilsonCowan/parameters/k_e rdf:type owl:NamedIndividual , ; "Maximum value of the excitatory response function" ; "1.0"^^xsd:double ; ; rdfs:label "k_e (WilsonCowan parameter)" ; "Maximum value of the excitatory response function" ; "k_e" . ### https://w3id.org/tvbo/WilsonCowan/parameters/k_i rdf:type owl:NamedIndividual , ; "Maximum value of the inhibitory response function" ; "1.0"^^xsd:double ; ; rdfs:label "k_i (WilsonCowan parameter)" ; "Maximum value of the inhibitory response function" ; "k_i" . ### https://w3id.org/tvbo/WilsonCowan/parameters/r_e rdf:type owl:NamedIndividual , ; "Excitatory refractory period" ; "1.0"^^xsd:double ; ; rdfs:label "r_e (WilsonCowan parameter)" ; "Excitatory refractory period" ; "r_e" . ### https://w3id.org/tvbo/WilsonCowan/parameters/r_i rdf:type owl:NamedIndividual , ; "Inhibitory refractory period" ; "1.0"^^xsd:double ; ; rdfs:label "r_i (WilsonCowan parameter)" ; "Inhibitory refractory period" ; "r_i" . ### https://w3id.org/tvbo/WilsonCowan/parameters/shift_sigmoid rdf:type owl:NamedIndividual , ; "In order to have resting state (E=0 and I=0) in absence of external input, the logistic curve are translated downward S(0)=0" ; "1.0"^^xsd:double ; rdfs:label "shift_sigmoid (WilsonCowan parameter)" ; """In order to have resting state (E=0 and I=0) in absence of external input, the logistic curve are translated downward S(0)=0""" ; "shift_sigmoid" . ### https://w3id.org/tvbo/WilsonCowan/parameters/tau_e rdf:type owl:NamedIndividual , ; "Excitatory population, membrane time-constant (Wilson and Cowan, 1972)" ; "10.0"^^xsd:double ; ; rdfs:label "tau_e (WilsonCowan parameter)" ; "Excitatory population, membrane time-constant (Wilson and Cowan, 1972)." ; "tau_e" ; "ms" . ### https://w3id.org/tvbo/WilsonCowan/parameters/tau_i rdf:type owl:NamedIndividual , ; "Inhibitory population, membrane time-constant (Wilson and Cowan, 1972)" ; "10.0"^^xsd:double ; ; rdfs:label "tau_i (WilsonCowan parameter)" ; "Inhibitory population, membrane time-constant (Wilson and Cowan, 1972)." ; "tau_i" ; "ms" . ### https://w3id.org/tvbo/WilsonCowan/parameters/theta_e rdf:type owl:NamedIndividual , ; "Excitation threshold of excitatory population (Sanz-Leon et al" ; "0.0"^^xsd:double ; rdfs:label "theta_e (WilsonCowan parameter)" ; "Excitation threshold of excitatory population (Sanz-Leon et al., 2015)." ; "theta_e" . ### https://w3id.org/tvbo/WilsonCowan/parameters/theta_i rdf:type owl:NamedIndividual , ; "Excitation threshold of inhibitory population (Sanz-Leon et al" ; "0.0"^^xsd:double ; ; rdfs:label "theta_i (WilsonCowan parameter)" ; "Excitation threshold of inhibitory population (Sanz-Leon et al., 2015)." ; "theta_i" . ### https://w3id.org/tvbo/WilsonCowan/state_variables/E rdf:type owl:NamedIndividual , ; "State-variable of the Wilson and Cowan model (Wilson and Cowan, 1973), denoting the mean firing rate of all excitatory neurons of the population" ; ; rdfs:label "E (WilsonCowan state variable)" ; "E" ; "Derivative(E, t)" ; "(-E + s_e*(-E*r_e + k_e))/tau_e" . ### https://w3id.org/tvbo/WilsonCowan/state_variables/I rdf:type owl:NamedIndividual , ; "State-variable of the Wilson and Cowan model (Wilson and Cowan, 1973), denoting the mean firing rate of all inhibitory neurons of the population" ; ; rdfs:label "I (WilsonCowan state variable)" ; "I" ; "Derivative(I, t)" ; "(-I + s_i*(-I*r_i + k_i))/tau_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/Fe_ext rdf:type owl:NamedIndividual , ; rdfs:label "Fe_ext (ZerlautAdaptationFirstOrder derived variable)" ; "Fe_ext" ; "Fe_ext" ; "Piecewise((0, K_ext_e*(c_pop0 + lc_E + ou_drift*weight_noise) < 0), (c_pop0 + lc_E + ou_drift*weight_noise, True))" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/Fi_ext rdf:type owl:NamedIndividual , ; rdfs:label "Fi_ext (ZerlautAdaptationFirstOrder derived variable)" ; "Fi_ext" ; "Fi_ext" ; "lc_I" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/S_e rdf:type owl:NamedIndividual , ; rdfs:label "S_e (ZerlautAdaptationFirstOrder derived variable)" ; "S_e" ; "S_e" ; "(-sV0 + sigma_V_e)/DsV0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/S_i rdf:type owl:NamedIndividual , ; """Scaling of the remote input for the inhibitory population with respect to the excitatory population.""" ; rdfs:label "S_i (ZerlautAdaptationFirstOrder derived variable)" ; "S_i" ; "S_i" ; "(-sV0 + sigma_V_i)/DsV0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/T_V_e rdf:type owl:NamedIndividual , ; rdfs:label "T_V_e (ZerlautAdaptationFirstOrder derived variable)" ; "T_V_e" ; "T_V_e" ; "(U_e_e**2*fe_e*tau_e**2 + U_i_e**2*fi_e*tau_i**2)/(U_e_e**2*fe_e*tau_e**2/(T_m_e + tau_e) + U_i_e**2*fi_e*tau_i**2/(T_m_e + tau_i))" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/T_V_i rdf:type owl:NamedIndividual , ; rdfs:label "T_V_i (ZerlautAdaptationFirstOrder derived variable)" ; "T_V_i" ; "T_V_i" ; "(U_e_i**2*fe_i*tau_e**2 + U_i_i**2*fi_i*tau_i**2)/(U_e_i**2*fe_i*tau_e**2/(T_m_i + tau_e) + U_i_i**2*fi_i*tau_i**2/(T_m_i + tau_i))" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/T_e rdf:type owl:NamedIndividual , ; rdfs:label "T_e (ZerlautAdaptationFirstOrder derived variable)" ; "T_e" ; "T_e" ; "(-TvN0 + T_V_e*g_L/C_m)/DTvN0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/T_i rdf:type owl:NamedIndividual , ; rdfs:label "T_i (ZerlautAdaptationFirstOrder derived variable)" ; "T_i" ; "T_i" ; "(-TvN0 + T_V_i*g_L/C_m)/DTvN0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/T_m_e rdf:type owl:NamedIndividual , ; rdfs:label "T_m_e (ZerlautAdaptationFirstOrder derived variable)" ; "T_m_e" ; "T_m_e" ; "C_m/mu_G_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/T_m_i rdf:type owl:NamedIndividual , ; rdfs:label "T_m_i (ZerlautAdaptationFirstOrder derived variable)" ; "T_m_i" ; "T_m_i" ; "C_m/mu_G_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/U_e_e rdf:type owl:NamedIndividual , ; rdfs:label "U_e_e (ZerlautAdaptationFirstOrder derived variable)" ; "U_e_e" ; "U_e_e" ; "Q_e*(E_e - mu_V_e)/mu_G_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/U_e_i rdf:type owl:NamedIndividual , ; rdfs:label "U_e_i (ZerlautAdaptationFirstOrder derived variable)" ; "U_e_i" ; "U_e_i" ; "Q_e*(E_e - mu_V_i)/mu_G_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/U_i_e rdf:type owl:NamedIndividual , ; rdfs:label "U_i_e (ZerlautAdaptationFirstOrder derived variable)" ; "U_i_e" ; "U_i_e" ; "Q_i*(E_i - mu_V_e)/mu_G_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/U_i_i rdf:type owl:NamedIndividual , ; rdfs:label "U_i_i (ZerlautAdaptationFirstOrder derived variable)" ; "U_i_i" ; "U_i_i" ; "Q_i*(E_i - mu_V_i)/mu_G_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/V_e rdf:type owl:NamedIndividual , ; rdfs:label "V_e (ZerlautAdaptationFirstOrder derived variable)" ; "V_e" ; "V_e" ; "(-muV0 + mu_V_e)/DmuV0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/V_i rdf:type owl:NamedIndividual , ; rdfs:label "V_i (ZerlautAdaptationFirstOrder derived variable)" ; "V_i" ; "V_i" ; "(-muV0 + mu_V_i)/DmuV0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/V_thre_e rdf:type owl:NamedIndividual , ; rdfs:label "V_thre_e (ZerlautAdaptationFirstOrder derived variable)" ; "V_thre_e" ; "V_thre_e" ; "1000.0*P0_e + 1000.0*P1_e*V_e + 1000.0*P2_e*S_e + 1000.0*P3_e*T_e + 1000.0*P4_e*V_e**2 + 1000.0*P5_e*S_e**2 + 1000.0*P6_e*T_e**2 + 1000.0*P7_e*S_e*V_e + 1000.0*P8_e*T_e*V_e + 1000.0*P9_e*S_e*T_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/V_thre_i rdf:type owl:NamedIndividual , ; rdfs:label "V_thre_i (ZerlautAdaptationFirstOrder derived variable)" ; "V_thre_i" ; "V_thre_i" ; "1000.0*P0_i + 1000.0*P1_i*V_i + 1000.0*P2_i*S_i + 1000.0*P3_i*T_i + 1000.0*P4_i*V_i**2 + 1000.0*P5_i*S_i**2 + 1000.0*P6_i*T_i**2 + 1000.0*P7_i*S_i*V_i + 1000.0*P8_i*T_i*V_i + 1000.0*P9_i*S_i*T_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/f_out_e rdf:type owl:NamedIndividual , ; rdfs:label "f_out_e (ZerlautAdaptationFirstOrder derived variable)" ; "f_out_e" ; "f_out_e" ; "erfc(sqrt(2)*(V_thre_e - mu_V_e)/(2*sigma_V_e))/(2*T_V_e)" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/f_out_i rdf:type owl:NamedIndividual , ; rdfs:label "f_out_i (ZerlautAdaptationFirstOrder derived variable)" ; "f_out_i" ; "f_out_i" ; "erfc(sqrt(2)*(V_thre_i - mu_V_i)/(2*sigma_V_i))/(2*T_V_i)" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/fe_e rdf:type owl:NamedIndividual , ; rdfs:label "fe_e (ZerlautAdaptationFirstOrder derived variable)" ; "fe_e" ; "fe_e" ; "K_ext_e*(Fe_ext + external_input_ex_ex) + N_tot*p_connect_e*(1.0 - g)*(E + 1/1000000)" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/fe_i rdf:type owl:NamedIndividual , ; rdfs:label "fe_i (ZerlautAdaptationFirstOrder derived variable)" ; "fe_i" ; "fe_i" ; "K_ext_e*(Fe_ext + external_input_in_ex) + N_tot*p_connect_e*(1.0 - g)*(E + 1/1000000)" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/fi_e rdf:type owl:NamedIndividual , ; rdfs:label "fi_e (ZerlautAdaptationFirstOrder derived variable)" ; "fi_e" ; "fi_e" ; "K_ext_i*(Fi_ext + external_input_ex_in) + N_tot*g*p_connect_i*(I + 1/1000000)" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/fi_i rdf:type owl:NamedIndividual , ; rdfs:label "fi_i (ZerlautAdaptationFirstOrder derived variable)" ; "fi_i" ; "fi_i" ; "K_ext_i*(Fi_ext + external_input_in_in) + N_tot*g*p_connect_i*(I + 1/1000000)" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/lc_E rdf:type owl:NamedIndividual , ; rdfs:label "lc_E (ZerlautAdaptationFirstOrder derived variable)" ; "lc_E" ; "lc_E" ; "local_coupling*E" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/lc_I rdf:type owl:NamedIndividual , ; rdfs:label "lc_I (ZerlautAdaptationFirstOrder derived variable)" ; "lc_I" ; "lc_I" ; "I*local_coupling" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/mu_G_e rdf:type owl:NamedIndividual , ; rdfs:label "mu_G_e (ZerlautAdaptationFirstOrder derived variable)" ; "mu_G_e" ; "mu_G_e" ; "g_L + mu_Ge_e + mu_Gi_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/mu_G_i rdf:type owl:NamedIndividual , ; rdfs:label "mu_G_i (ZerlautAdaptationFirstOrder derived variable)" ; "mu_G_i" ; "mu_G_i" ; "g_L + mu_Ge_i + mu_Gi_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/mu_Ge_e rdf:type owl:NamedIndividual , ; rdfs:label "mu_Ge_e (ZerlautAdaptationFirstOrder derived variable)" ; "mu_Ge_e" ; "mu_Ge_e" ; "Q_e*fe_e*tau_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/mu_Ge_i rdf:type owl:NamedIndividual , ; rdfs:label "mu_Ge_i (ZerlautAdaptationFirstOrder derived variable)" ; "mu_Ge_i" ; "mu_Ge_i" ; "Q_e*fe_i*tau_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/mu_Gi_e rdf:type owl:NamedIndividual , ; rdfs:label "mu_Gi_e (ZerlautAdaptationFirstOrder derived variable)" ; "mu_Gi_e" ; "mu_Gi_e" ; "Q_i*fi_e*tau_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/mu_Gi_i rdf:type owl:NamedIndividual , ; rdfs:label "mu_Gi_i (ZerlautAdaptationFirstOrder derived variable)" ; "mu_Gi_i" ; "mu_Gi_i" ; "Q_i*fi_i*tau_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/mu_V_e rdf:type owl:NamedIndividual , ; rdfs:label "mu_V_e (ZerlautAdaptationFirstOrder derived variable)" ; "mu_V_e" ; "mu_V_e" ; "(E_L_e*g_L + E_e*mu_Ge_e + E_i*mu_Gi_e - W_e)/mu_G_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/mu_V_i rdf:type owl:NamedIndividual , ; rdfs:label "mu_V_i (ZerlautAdaptationFirstOrder derived variable)" ; "mu_V_i" ; "mu_V_i" ; "(E_L_i*g_L + E_e*mu_Ge_i + E_i*mu_Gi_i - W_i)/mu_G_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/sigma_V_e rdf:type owl:NamedIndividual , ; rdfs:label "sigma_V_e (ZerlautAdaptationFirstOrder derived variable)" ; "sigma_V_e" ; "sigma_V_e" ; "sqrt(U_e_e**2*fe_e*tau_e**2/(2.0*T_m_e + 2.0*tau_e) + U_i_e**2*fi_e*tau_i**2/(2.0*T_m_e + 2.0*tau_i))" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/derived_variables/sigma_V_i rdf:type owl:NamedIndividual , ; rdfs:label "sigma_V_i (ZerlautAdaptationFirstOrder derived variable)" ; "sigma_V_i" ; "sigma_V_i" ; "sqrt(U_e_i**2*fe_i*tau_e**2/(2.0*T_m_i + 2.0*tau_e) + U_i_i**2*fi_i*tau_i**2/(2.0*T_m_i + 2.0*tau_i))" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/C_m rdf:type owl:NamedIndividual , ; "membrane capacitance [pF]" ; "200.0"^^xsd:double ; ; rdfs:label "C_m (ZerlautAdaptationFirstOrder parameter)" ; "membrane capacitance [pF]" ; "C_m" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/DTvN0 rdf:type owl:NamedIndividual , ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "1.0"^^xsd:double ; rdfs:label "DTvN0 (ZerlautAdaptationFirstOrder parameter)" ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "DTvN0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/DmuV0 rdf:type owl:NamedIndividual , ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "10.0"^^xsd:double ; rdfs:label "DmuV0 (ZerlautAdaptationFirstOrder parameter)" ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "DmuV0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/DsV0 rdf:type owl:NamedIndividual , ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "6.0"^^xsd:double ; rdfs:label "DsV0 (ZerlautAdaptationFirstOrder parameter)" ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "DsV0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/E_L_e rdf:type owl:NamedIndividual , ; "leak reversal potential for excitatory [mV]" ; "-65.0"^^xsd:double ; ; rdfs:label "E_L_e (ZerlautAdaptationFirstOrder parameter)" ; "leak reversal potential for excitatory [mV]" ; "E_L_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/E_L_i rdf:type owl:NamedIndividual , ; "leak reversal potential for inhibitory [mV]" ; "-65.0"^^xsd:double ; ; rdfs:label "E_L_i (ZerlautAdaptationFirstOrder parameter)" ; "leak reversal potential for inhibitory [mV]" ; "E_L_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/E_e rdf:type owl:NamedIndividual , ; "excitatory reversal potential [mV]" ; "0.0"^^xsd:double ; ; rdfs:label "E_e (ZerlautAdaptationFirstOrder parameter)" ; "excitatory reversal potential [mV]" ; "E_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/E_i rdf:type owl:NamedIndividual , ; "inhibitory reversal potential [mV]" ; "-80.0"^^xsd:double ; ; rdfs:label "E_i (ZerlautAdaptationFirstOrder parameter)" ; "inhibitory reversal potential [mV]" ; "E_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/K_ext_e rdf:type owl:NamedIndividual , ; "Number of excitatory connexions from external population" ; "400.0"^^xsd:double ; rdfs:label "K_ext_e (ZerlautAdaptationFirstOrder parameter)" ; "Number of excitatory connexions from external population" ; "K_ext_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/K_ext_i rdf:type owl:NamedIndividual , ; "Number of inhibitory connexions from external population" ; "0.0"^^xsd:double ; rdfs:label "K_ext_i (ZerlautAdaptationFirstOrder parameter)" ; "Number of inhibitory connexions from external population" ; "K_ext_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/N_tot rdf:type owl:NamedIndividual , ; "cell number" ; "10000.0"^^xsd:double ; rdfs:label "N_tot (ZerlautAdaptationFirstOrder parameter)" ; "cell number" ; "N_tot" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P0_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "-0.04983106"^^xsd:double ; rdfs:label "P0_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P0_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P0_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "-0.05149122"^^xsd:double ; rdfs:label "P0_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P0_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P1_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "0.005063551"^^xsd:double ; rdfs:label "P1_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P1_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P1_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "0.004003689"^^xsd:double ; rdfs:label "P1_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P1_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P2_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "-0.02347012"^^xsd:double ; rdfs:label "P2_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P2_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P2_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "-0.008352014"^^xsd:double ; rdfs:label "P2_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P2_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P3_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "0.002295151"^^xsd:double ; rdfs:label "P3_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P3_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P3_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "2.414238E-4"^^xsd:double ; rdfs:label "P3_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P3_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P4_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "-4.105303E-4"^^xsd:double ; rdfs:label "P4_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P4_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P4_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "-5.070645E-4"^^xsd:double ; rdfs:label "P4_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P4_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P5_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "0.01054705"^^xsd:double ; rdfs:label "P5_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P5_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P5_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "0.001434539"^^xsd:double ; rdfs:label "P5_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P5_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P6_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "-0.03659253"^^xsd:double ; rdfs:label "P6_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P6_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P6_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "-0.01468669"^^xsd:double ; rdfs:label "P6_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P6_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P7_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "0.007437488"^^xsd:double ; rdfs:label "P7_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P7_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P7_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "0.004502706"^^xsd:double ; rdfs:label "P7_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P7_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P8_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "0.001265065"^^xsd:double ; rdfs:label "P8_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P8_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P8_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "0.002847219"^^xsd:double ; rdfs:label "P8_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P8_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P9_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "-0.04072161"^^xsd:double ; rdfs:label "P9_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P9_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P9_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "-0.0153578"^^xsd:double ; rdfs:label "P9_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P9_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P_e rdf:type owl:NamedIndividual , ; "Polynome of excitatory phenomenological threshold (order 9)" ; "-0.04983106"^^xsd:double ; rdfs:label "P_e (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of excitatory phenomenological threshold (order 9)" ; "P_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/P_i rdf:type owl:NamedIndividual , ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "-0.05149122"^^xsd:double ; rdfs:label "P_i (ZerlautAdaptationFirstOrder parameter)" ; "Polynome of inhibitory phenomenological threshold (order 9)" ; "P_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/Q_e rdf:type owl:NamedIndividual , ; "excitatory quantal conductance [nS]" ; "1.5"^^xsd:double ; ; rdfs:label "Q_e (ZerlautAdaptationFirstOrder parameter)" ; "excitatory quantal conductance [nS]" ; "Q_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/Q_i rdf:type owl:NamedIndividual , ; "inhibitory quantal conductance [nS]" ; "5.0"^^xsd:double ; ; rdfs:label "Q_i (ZerlautAdaptationFirstOrder parameter)" ; "inhibitory quantal conductance [nS]" ; "Q_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/S_i rdf:type owl:NamedIndividual , ; "Scaling of the remote input for the inhibitory population with respect to the excitatory population" ; "1.0"^^xsd:double ; ; rdfs:label "S_i (ZerlautAdaptationFirstOrder parameter)" ; """Scaling of the remote input for the inhibitory population with respect to the excitatory population.""" ; "S_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/T rdf:type owl:NamedIndividual , ; "Time scale of describing network activity" ; "20.0"^^xsd:double ; rdfs:label "T (ZerlautAdaptationFirstOrder parameter)" ; "Time scale of describing network activity" ; "T" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/TvN0 rdf:type owl:NamedIndividual , ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "0.5"^^xsd:double ; rdfs:label "TvN0 (ZerlautAdaptationFirstOrder parameter)" ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "TvN0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/a_e rdf:type owl:NamedIndividual , ; "Excitatory adaptation conductance [nS]" ; "4.0"^^xsd:double ; ; rdfs:label "a_e (ZerlautAdaptationFirstOrder parameter)" ; "Excitatory adaptation conductance [nS]" ; "a_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/a_i rdf:type owl:NamedIndividual , ; "Inhibitory adaptation conductance [nS]" ; "0.0"^^xsd:double ; ; rdfs:label "a_i (ZerlautAdaptationFirstOrder parameter)" ; "Inhibitory adaptation conductance [nS]" ; "a_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/b_e rdf:type owl:NamedIndividual , ; "Excitatory adaptation current increment [pA]" ; "60.0"^^xsd:double ; ; rdfs:label "b_e (ZerlautAdaptationFirstOrder parameter)" ; "Excitatory adaptation current increment [pA]" ; "b_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/b_i rdf:type owl:NamedIndividual , ; "Inhibitory adaptation current increment [pA]" ; "0.0"^^xsd:double ; ; rdfs:label "b_i (ZerlautAdaptationFirstOrder parameter)" ; "Inhibitory adaptation current increment [pA]" ; "b_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/external_input_ex_ex rdf:type owl:NamedIndividual , ; "external drive" ; "0.0"^^xsd:double ; rdfs:label "external_input_ex_ex (ZerlautAdaptationFirstOrder parameter)" ; "external drive" ; "external_input_ex_ex" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/external_input_ex_in rdf:type owl:NamedIndividual , ; "external drive" ; "0.0"^^xsd:double ; rdfs:label "external_input_ex_in (ZerlautAdaptationFirstOrder parameter)" ; "external drive" ; "external_input_ex_in" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/external_input_in_ex rdf:type owl:NamedIndividual , ; "external drive" ; "0.0"^^xsd:double ; rdfs:label "external_input_in_ex (ZerlautAdaptationFirstOrder parameter)" ; "external drive" ; "external_input_in_ex" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/external_input_in_in rdf:type owl:NamedIndividual , ; "external drive" ; "0.0"^^xsd:double ; rdfs:label "external_input_in_in (ZerlautAdaptationFirstOrder parameter)" ; "external drive" ; "external_input_in_in" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/g rdf:type owl:NamedIndividual , ; "fraction of inhibitory cells" ; "0.2"^^xsd:double ; ; rdfs:label "g (ZerlautAdaptationFirstOrder parameter)" ; "fraction of inhibitory cells" ; "g" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/g_L rdf:type owl:NamedIndividual , ; "leak conductance [nS]" ; "10.0"^^xsd:double ; ; rdfs:label "g_L (ZerlautAdaptationFirstOrder parameter)" ; "leak conductance [nS]" ; "g_L" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/muV0 rdf:type owl:NamedIndividual , ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "-60.0"^^xsd:double ; rdfs:label "muV0 (ZerlautAdaptationFirstOrder parameter)" ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "muV0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/p_connect_e rdf:type owl:NamedIndividual , ; "connectivity probability" ; "0.05"^^xsd:double ; rdfs:label "p_connect_e (ZerlautAdaptationFirstOrder parameter)" ; "connectivity probability" ; "p_connect_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/p_connect_i rdf:type owl:NamedIndividual , ; "connectivity probability" ; "0.05"^^xsd:double ; rdfs:label "p_connect_i (ZerlautAdaptationFirstOrder parameter)" ; "connectivity probability" ; "p_connect_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/sV0 rdf:type owl:NamedIndividual , ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "4.0"^^xsd:double ; rdfs:label "sV0 (ZerlautAdaptationFirstOrder parameter)" ; "Normalization factors page 48 after the equation 4 from [ZD_2018]" ; "sV0" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/tau_OU rdf:type owl:NamedIndividual , ; "time constant noise" ; "5.0"^^xsd:double ; rdfs:label "tau_OU (ZerlautAdaptationFirstOrder parameter)" ; "time constant noise" ; "tau_OU" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/tau_e rdf:type owl:NamedIndividual , ; "excitatory decay [ms]" ; "5.0"^^xsd:double ; ; rdfs:label "tau_e (ZerlautAdaptationFirstOrder parameter)" ; "excitatory decay [ms]" ; "tau_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/tau_i rdf:type owl:NamedIndividual , ; "inhibitory decay [ms]" ; "5.0"^^xsd:double ; ; rdfs:label "tau_i (ZerlautAdaptationFirstOrder parameter)" ; "inhibitory decay [ms]" ; "tau_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/tau_w_e rdf:type owl:NamedIndividual , ; "Adaptation time constant of excitatory neurons [ms]" ; "500.0"^^xsd:double ; ; rdfs:label "tau_w_e (ZerlautAdaptationFirstOrder parameter)" ; "Adaptation time constant of excitatory neurons [ms]" ; "tau_w_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/tau_w_i rdf:type owl:NamedIndividual , ; "Adaptation time constant of inhibitory neurons [ms]" ; "1.0"^^xsd:double ; ; rdfs:label "tau_w_i (ZerlautAdaptationFirstOrder parameter)" ; "Adaptation time constant of inhibitory neurons [ms]" ; "tau_w_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/parameters/weight_noise rdf:type owl:NamedIndividual , ; "weight noise" ; "10.5"^^xsd:double ; rdfs:label "weight_noise (ZerlautAdaptationFirstOrder parameter)" ; "weight noise" ; "weight_noise" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/state_variables/E rdf:type owl:NamedIndividual , ; "Firing rate of excitatory population in KHz" ; rdfs:label "E (ZerlautAdaptationFirstOrder state variable)" ; "E" ; "Derivative(E, t)" ; "(-E + f_out_e)/T" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/state_variables/I rdf:type owl:NamedIndividual , ; "Firing rate of inhibitory population in KHz" ; rdfs:label "I (ZerlautAdaptationFirstOrder state variable)" ; "I" ; "Derivative(I, t)" ; "(-I + f_out_i)/T" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/state_variables/W_e rdf:type owl:NamedIndividual , ; "Level of adaptation of excitatory in pA" ; rdfs:label "W_e (ZerlautAdaptationFirstOrder state variable)" ; "W_e" ; "Derivative(W_e, t)" ; "E*b_e - W_e/tau_w_e + a_e*(-E_L_e + mu_V_e)/tau_w_e" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/state_variables/W_i rdf:type owl:NamedIndividual , ; "Level of adaptation of inhibitory in pA" ; rdfs:label "W_i (ZerlautAdaptationFirstOrder state variable)" ; "W_i" ; "Derivative(W_i, t)" ; "I*b_i - W_i/tau_w_i + a_i*(-E_L_i + mu_V_i)/tau_w_i" . ### https://w3id.org/tvbo/ZerlautAdaptationFirstOrder/state_variables/ou_drift rdf:type owl:NamedIndividual , ; rdfs:label "ou_drift (ZerlautAdaptationFirstOrder state variable)" ; "ou_drift" ; "Derivative(ou_drift, t)" ; "-ou_drift/tau_OU" . ### https://w3id.org/tvbo/ZetterbergJansen/derived_variables/coupled_input rdf:type owl:NamedIndividual , ; rdfs:label "coupled_input (ZetterbergJansen derived variable)" ; "coupled_input" ; "coupled_input" ; "2*e0/(exp(rho_1*(-c_pop0 - local_coupling*v6 + rho_2)) + 1)" . ### https://w3id.org/tvbo/ZetterbergJansen/derived_variables/sigma_v1 rdf:type owl:NamedIndividual , ; rdfs:label "sigma_v1 (ZetterbergJansen derived variable)" ; "sigma_v1" ; "sigma_v1" ; "Piecewise((0, rho_1*(rho_2 - v1) > 709), (2*e0/(exp(rho_1*(rho_2 - v1)) + 1), True))" . ### https://w3id.org/tvbo/ZetterbergJansen/derived_variables/sigma_v23 rdf:type owl:NamedIndividual , ; rdfs:label "sigma_v23 (ZetterbergJansen derived variable)" ; "sigma_v23" ; "sigma_v23" ; "Piecewise((0, rho_1*(rho_2 - (v2 - v3)) > 709), (2*e0/(exp(rho_1*(rho_2 - (v2 - v3))) + 1), True))" . ### https://w3id.org/tvbo/ZetterbergJansen/derived_variables/sigma_v45 rdf:type owl:NamedIndividual , ; rdfs:label "sigma_v45 (ZetterbergJansen derived variable)" ; "sigma_v45" ; "sigma_v45" ; "Piecewise((0, rho_1*(rho_2 - (v4 - v5)) > 709), (2*e0/(exp(rho_1*(rho_2 - (v4 - v5))) + 1), True))" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/He rdf:type owl:NamedIndividual , ; "Maximum amplitude of EPSP [mV]" ; "3.25"^^xsd:double ; , ; rdfs:label "He (ZetterbergJansen parameter)" ; "Maximum amplitude of EPSP [mV]. Also called average synaptic gain." ; "He" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/Hi rdf:type owl:NamedIndividual , ; "Maximum amplitude of IPSP [mV]" ; "22.0"^^xsd:double ; , ; rdfs:label "Hi (ZetterbergJansen parameter)" ; "Maximum amplitude of IPSP [mV]. Also called average synaptic gain." ; "Hi" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/P rdf:type owl:NamedIndividual , ; "Maximum firing rate to the pyramidal population [ms^-1]" ; "0.12"^^xsd:double ; , ; rdfs:label "P (ZetterbergJansen parameter)" ; """Maximum firing rate to the pyramidal population [ms^-1]. (External stimulus. Constant intensity.Entry point for coupling.)""" ; "P" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/Q rdf:type owl:NamedIndividual , ; "Maximum firing rate to the interneurons population [ms^-1]" ; "0.12"^^xsd:double ; , ; rdfs:label "Q (ZetterbergJansen parameter)" ; """Maximum firing rate to the interneurons population [ms^-1]. (External stimulus. Constant intensity.Entry point for coupling.)""" ; "Q" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/U rdf:type owl:NamedIndividual , ; "Maximum firing rate to the stellate population [ms^-1]" ; "0.12"^^xsd:double ; ; rdfs:label "U (ZetterbergJansen parameter)" ; """Maximum firing rate to the stellate population [ms^-1]. (External stimulus. Constant intensity.Entry point for coupling.)""" ; "U" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/e0 rdf:type owl:NamedIndividual , ; "Half of the maximum population mean firing rate [ms^-1]" ; "0.0025"^^xsd:double ; ; rdfs:label "e0 (ZetterbergJansen parameter)" ; "Half of the maximum population mean firing rate [ms^-1]." ; "e0" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/gamma_1 rdf:type owl:NamedIndividual , ; "Average number of synapses between populations (pyramidal to stellate)" ; "135.0"^^xsd:double ; , ; rdfs:label "gamma_1 (ZetterbergJansen parameter)" ; "Average number of synapses between populations (pyramidal to stellate)." ; "gamma_1" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/gamma_1T rdf:type owl:NamedIndividual , ; "Coupling factor from the extrinisic input to the spiny stellate population" ; "1.0"^^xsd:double ; ; rdfs:label "gamma_1T (ZetterbergJansen parameter)" ; "Coupling factor from the extrinisic input to the spiny stellate population." ; "gamma_1T" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/gamma_2 rdf:type owl:NamedIndividual , ; "Average number of synapses between populations (stellate to pyramidal)" ; "108.0"^^xsd:double ; ; rdfs:label "gamma_2 (ZetterbergJansen parameter)" ; "Average number of synapses between populations (stellate to pyramidal)." ; "gamma_2" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/gamma_2T rdf:type owl:NamedIndividual , ; "Coupling factor from the extrinisic input to the pyramidal population" ; "1.0"^^xsd:double ; , ; rdfs:label "gamma_2T (ZetterbergJansen parameter)" ; "Coupling factor from the extrinisic input to the pyramidal population." ; "gamma_2T" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/gamma_3 rdf:type owl:NamedIndividual , ; "Connectivity constant (pyramidal to interneurons)" ; "33.75"^^xsd:double ; , , ; rdfs:label "gamma_3 (ZetterbergJansen parameter)" ; "Connectivity constant (pyramidal to interneurons)" ; "gamma_3" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/gamma_3T rdf:type owl:NamedIndividual , ; "Coupling factor from the extrinisic input to the inhibitory population" ; "1.0"^^xsd:double ; ; rdfs:label "gamma_3T (ZetterbergJansen parameter)" ; "Coupling factor from the extrinisic input to the inhibitory population." ; "gamma_3T" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/gamma_4 rdf:type owl:NamedIndividual , ; "Connectivity constant (interneurons to pyramidal)" ; "33.75"^^xsd:double ; , ; rdfs:label "gamma_4 (ZetterbergJansen parameter)" ; "Connectivity constant (interneurons to pyramidal)" ; "gamma_4" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/gamma_5 rdf:type owl:NamedIndividual , ; "Connectivity constant (interneurons to interneurons)" ; "15.0"^^xsd:double ; ; rdfs:label "gamma_5 (ZetterbergJansen parameter)" ; "Connectivity constant (interneurons to interneurons)" ; "gamma_5" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/ke rdf:type owl:NamedIndividual , ; "Reciprocal of the time constant of passive membrane and all other spatially distributed delays in the dendritic network [ms^-1]" ; "0.1"^^xsd:double ; rdfs:label "ke (ZetterbergJansen parameter)" ; """Reciprocal of the time constant of passive membrane and all other spatially distributed delays in the dendritic network [ms^-1]. Also called average synaptic time constant.""" ; "ke" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/ki rdf:type owl:NamedIndividual , ; "Reciprocal of the time constant of passive membrane and all other spatially distributed delays in the dendritic network [ms^-1]" ; "0.05"^^xsd:double ; rdfs:label "ki (ZetterbergJansen parameter)" ; """Reciprocal of the time constant of passive membrane and all other spatially distributed delays in the dendritic network [ms^-1]. Also called average synaptic time constant.""" ; "ki" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/rho_1 rdf:type owl:NamedIndividual , ; "Steepness of the sigmoidal transformation [mV^-1]" ; "0.56"^^xsd:double ; rdfs:label "rho_1 (ZetterbergJansen parameter)" ; "Steepness of the sigmoidal transformation [mV^-1]." ; "rho_1" . ### https://w3id.org/tvbo/ZetterbergJansen/parameters/rho_2 rdf:type owl:NamedIndividual , ; "Firing threshold (PSP) for which a 50% firing rate is achieved" ; "6.0"^^xsd:double ; rdfs:label "rho_2 (ZetterbergJansen parameter)" ; """Firing threshold (PSP) for which a 50% firing rate is achieved. In other words, it is the value of the average membrane potential corresponding to the inflection point of the sigmoid [mV]. Population mean firing threshold.""" ; "rho_2" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/v1 rdf:type owl:NamedIndividual , ; rdfs:label "v1 (ZetterbergJansen state variable)" ; "v1" ; "Derivative(v1, t)" ; "y1" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/v2 rdf:type owl:NamedIndividual , ; rdfs:label "v2 (ZetterbergJansen state variable)" ; "v2" ; "Derivative(v2, t)" ; "y2" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/v3 rdf:type owl:NamedIndividual , ; rdfs:label "v3 (ZetterbergJansen state variable)" ; "v3" ; "Derivative(v3, t)" ; "y3" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/v4 rdf:type owl:NamedIndividual , ; rdfs:label "v4 (ZetterbergJansen state variable)" ; "v4" ; "Derivative(v4, t)" ; "y4" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/v5 rdf:type owl:NamedIndividual , ; rdfs:label "v5 (ZetterbergJansen state variable)" ; "v5" ; "Derivative(v5, t)" ; "y5" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/v6 rdf:type owl:NamedIndividual , ; rdfs:label "v6 (ZetterbergJansen state variable)" ; "v6" ; "Derivative(v6, t)" ; "y2 - y3" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/v7 rdf:type owl:NamedIndividual , ; rdfs:label "v7 (ZetterbergJansen state variable)" ; "v7" ; "Derivative(v7, t)" ; "y4 - y5" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/y1 rdf:type owl:NamedIndividual , ; rdfs:label "y1 (ZetterbergJansen state variable)" ; "y1" ; "Derivative(y1, t)" ; "He*ke*(gamma_1*sigma_v23 + gamma_1T*(U + coupled_input)) - ke**2*v1 - 2*ke*y1" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/y2 rdf:type owl:NamedIndividual , ; rdfs:label "y2 (ZetterbergJansen state variable)" ; "y2" ; "Derivative(y2, t)" ; "He*ke*(gamma_2*sigma_v1 + gamma_2T*(P + coupled_input)) - ke**2*v2 - 2*ke*y2" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/y3 rdf:type owl:NamedIndividual , ; rdfs:label "y3 (ZetterbergJansen state variable)" ; "y3" ; "Derivative(y3, t)" ; "Hi*gamma_4*ki*sigma_v45 - ki**2*v3 - 2*ki*y3" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/y4 rdf:type owl:NamedIndividual , ; rdfs:label "y4 (ZetterbergJansen state variable)" ; "y4" ; "Derivative(y4, t)" ; "He*ke*(gamma_3*sigma_v23 + gamma_3T*(Q + coupled_input)) - ke**2*v4 - 2*ke*y4" . ### https://w3id.org/tvbo/ZetterbergJansen/state_variables/y5 rdf:type owl:NamedIndividual , ; rdfs:label "y5 (ZetterbergJansen state variable)" ; "y5" ; "Derivative(y5, t)" ; "Hi*gamma_5*ki*sigma_v45 - ke**2*v5 - 2*ki*y5" . ### https://w3id.org/tvbo/atlases/space-MNI152_atlas-Yeo17_res-1_dseg rdf:type owl:NamedIndividual , ; rdfs:label "space-MNI152_atlas-Yeo17_res-1_dseg" ; "Yeo17" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-1000_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-1000_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-100_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-100_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-200_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-200_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-300_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-300_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-400_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-400_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-500_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-500_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-600_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-600_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-700_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-700_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-800_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-800_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-900_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-17Networks_scale-900_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-1000_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-1000_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-100_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-100_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-200_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-200_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-300_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-300_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-400_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-400_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-500_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-500_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-600_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-600_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-700_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-700_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-800_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-800_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-900_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_atlas-Schaefer2018_seg-7Networks_scale-900_dseg" ; "Schaefer2018" . ### https://w3id.org/tvbo/atlases/tpl-MNI152NLin2009b_atlas-hcpmmp1_desc-ordered_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009b_atlas-hcpmmp1_desc-ordered_dseg" ; "hcpmmp1" . ### https://w3id.org/tvbo/atlases/tpl-MNI152NLin2009c_atlas-DesikanKilliany_desc-ranked_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009c_atlas-DesikanKilliany_desc-ranked_dseg" ; "DesikanKilliany" . ### https://w3id.org/tvbo/atlases/tpl-MNI152Nlin2009c_atlas-Destrieux_desc-ranked_dseg rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152Nlin2009c_atlas-Destrieux_desc-ranked_dseg" ; "Destrieux" . ### https://w3id.org/tvbo/continuations/Generic2dOscillator-bifurcation rdf:type owl:NamedIndividual , ; "Continue the equilibrium branch of the Generic2dOscillator as parameter a is varied. Detect Hopf bifurcations and continue periodic orbits from all Hopf points." ; rdfs:label "eq_in_a" . ### https://w3id.org/tvbo/continuations/Generic2dOscillator-bifurcation-full rdf:type owl:NamedIndividual , ; "Comprehensive bifurcation analysis of the Generic2dOscillator. Continues the equilibrium branch as parameter a is varied, detects fold and Hopf bifurcations, then branches to periodic orbits from both Hopf points with fine-tuned solver settings." ; rdfs:label "eq_in_a_full" . ### https://w3id.org/tvbo/coordinate_spaces/MNI152NLin2009b rdf:type owl:NamedIndividual , ; "Nonlinear 6th-generation MNI152 average, 2009b release (symmetric variant). Produced by the McConnell Brain Imaging Centre (Fonov et al., 2011)." ; rdfs:label "MNI152NLin2009b" ; "MNI152NLin2009b" , "MNI152NLin2009bSym" , "tpl-MNI152NLin2009bSym" ; "RAS" ; "anterior commissure" ; "mm" . ### https://w3id.org/tvbo/coordinate_spaces/MNI152NLin2009c rdf:type owl:NamedIndividual , ; "Nonlinear 6th-generation MNI152 average, 2009c release (symmetric variant). Produced by the McConnell Brain Imaging Centre (Fonov et al., 2011)." ; rdfs:label "MNI152NLin2009c" ; "MNI152NLin2009c" , "MNI152NLin2009cSym" , "tpl-MNI152NLin2009cSym" ; "RAS" ; "anterior commissure" ; "mm" . ### https://w3id.org/tvbo/coordinate_spaces/MNI152NLin2009cAsym rdf:type owl:NamedIndividual , ; "Nonlinear 6th-generation MNI152 average, 2009c release, asymmetric variant (Fonov et al., 2011). Default template space for fMRIPrep and many modern BIDS pipelines. TemplateFlow id: `tpl-MNI152NLin2009cAsym`." ; rdfs:label "MNI152NLin2009cAsym" ; "MNI152NLin2009cAsym" , "MNI152_2009c_asym" , "tpl-MNI152NLin2009cAsym" ; "RAS" ; "anterior commissure" ; "mm" . ### https://w3id.org/tvbo/coordinate_spaces/MNI152NLin6Asym rdf:type owl:NamedIndividual , ; "Sixth-generation nonlinear ICBM152 average (Mazziotta et al., 2001), asymmetric variant. This is the template shipped with FSL as `MNI152_T1_*mm.nii.gz` (commonly referred to as \"FSLMNI152\" or generic \"MNI152\" in older literature). TemplateFlow id: `tpl-MNI152NLin6Asym`." ; rdfs:label "MNI152NLin6Asym" ; "FSLMNI152" , "MNI152" , "MNI152NLin6" , "MNI152NLin6Asym" ; "RAS" ; "anterior commissure" ; "mm" . ### https://w3id.org/tvbo/coupling_functions/Difference rdf:type owl:NamedIndividual , ; rdfs:label "Difference" ; . ### https://w3id.org/tvbo/coupling_functions/FastLinearCoupling rdf:type owl:NamedIndividual , ; "Instantaneous linear coupling using vectorized matrix multiplication. Applies global coupling strength G to the weighted sum of source states. Faster than element-wise LinearCoupling for dense all-to-all connectivity." ; rdfs:label "FastLinearCoupling" ; , . ### https://w3id.org/tvbo/coupling_functions/HyperbolicTangent rdf:type owl:NamedIndividual , ; rdfs:label "HyperbolicTangent" ; , , , . ### https://w3id.org/tvbo/coupling_functions/KuramotoCoupling rdf:type owl:NamedIndividual , ; rdfs:label "KuramotoCoupling" ; , . ### https://w3id.org/tvbo/coupling_functions/Linear rdf:type owl:NamedIndividual , ; rdfs:label "Linear" ; , . ### https://w3id.org/tvbo/coupling_functions/PreSigmoidal rdf:type owl:NamedIndividual , ; rdfs:label "PreSigmoidal" ; , , , , . ### https://w3id.org/tvbo/coupling_functions/Scaling rdf:type owl:NamedIndividual , ; rdfs:label "Scaling" ; . ### https://w3id.org/tvbo/coupling_functions/Sigmoidal rdf:type owl:NamedIndividual , ; rdfs:label "Sigmoidal" ; , , , , . ### https://w3id.org/tvbo/coupling_functions/SigmoidalJansenRit rdf:type owl:NamedIndividual , ; rdfs:label "SigmoidalJansenRit" ; , , , , . ### https://w3id.org/tvbo/coupling_functions/Difference/parameters/a rdf:type owl:NamedIndividual , ; "0.1"^^xsd:double ; rdfs:label "a (Difference parameter)" ; "a" . ### https://w3id.org/tvbo/coupling_functions/FastLinearCoupling/parameters/G rdf:type owl:NamedIndividual , ; "Global coupling strength scaling long-range connections" ; "0.1"^^xsd:double ; rdfs:label "G (FastLinearCoupling parameter)" ; "G" . ### https://w3id.org/tvbo/coupling_functions/FastLinearCoupling/parameters/b rdf:type owl:NamedIndividual , ; "Offset/bias added to coupling signal" ; "0.0"^^xsd:double ; rdfs:label "b (FastLinearCoupling parameter)" ; "b" . ### https://w3id.org/tvbo/coupling_functions/HyperbolicTangent/parameters/a rdf:type owl:NamedIndividual , ; "Minimum of the sigmoid function" ; "1.0"^^xsd:double ; rdfs:label "a (HyperbolicTangent parameter)" ; "a" . ### https://w3id.org/tvbo/coupling_functions/HyperbolicTangent/parameters/b rdf:type owl:NamedIndividual , ; "Scaling factor for the variable" ; "1.0"^^xsd:double ; rdfs:label "b (HyperbolicTangent parameter)" ; "b" . ### https://w3id.org/tvbo/coupling_functions/HyperbolicTangent/parameters/midpoint rdf:type owl:NamedIndividual , ; "Midpoint of the linear portion of the sigmoid" ; "0.0"^^xsd:double ; rdfs:label "midpoint (HyperbolicTangent parameter)" ; "midpoint" . ### https://w3id.org/tvbo/coupling_functions/HyperbolicTangent/parameters/sigma rdf:type owl:NamedIndividual , ; "Standard deviation of the coupling" ; "1.0"^^xsd:double ; rdfs:label "sigma (HyperbolicTangent parameter)" ; "sigma" . ### https://w3id.org/tvbo/coupling_functions/KuramotoCoupling/parameters/N rdf:type owl:NamedIndividual , ; "Number of nodes, i.e., size of network." ; "1.0"^^xsd:double ; rdfs:label "N (KuramotoCoupling parameter)" ; "N" . ### https://w3id.org/tvbo/coupling_functions/KuramotoCoupling/parameters/a rdf:type owl:NamedIndividual , ; "Rescales the connection strength." ; "1.0"^^xsd:double ; rdfs:label "a (KuramotoCoupling parameter)" ; "a" . ### https://w3id.org/tvbo/coupling_functions/Linear/parameters/a rdf:type owl:NamedIndividual , ; "Linear scaling factor of the coupled (delayed) input." ; "0.00390625"^^xsd:double ; rdfs:label "a (Linear parameter)" ; "a" . ### https://w3id.org/tvbo/coupling_functions/Linear/parameters/b rdf:type owl:NamedIndividual , ; "Shifts the base of the connection strength while maintaining the absolute difference between different values." ; "0.0"^^xsd:double ; rdfs:label "b (Linear parameter)" ; "b" . ### https://w3id.org/tvbo/coupling_functions/PreSigmoidal/parameters/G rdf:type owl:NamedIndividual , ; "Gain" ; "60.0"^^xsd:double ; rdfs:label "G (PreSigmoidal parameter)" ; "G" . ### https://w3id.org/tvbo/coupling_functions/PreSigmoidal/parameters/H rdf:type owl:NamedIndividual , ; "Global Factor" ; "0.5"^^xsd:double ; rdfs:label "H (PreSigmoidal parameter)" ; "H" . ### https://w3id.org/tvbo/coupling_functions/PreSigmoidal/parameters/P rdf:type owl:NamedIndividual , ; "Excitation-Inhibition ratio" ; "1.0"^^xsd:double ; rdfs:label "P (PreSigmoidal parameter)" ; "P" . ### https://w3id.org/tvbo/coupling_functions/PreSigmoidal/parameters/Q rdf:type owl:NamedIndividual , ; "Average" ; "1.0"^^xsd:double ; rdfs:label "Q (PreSigmoidal parameter)" ; "Q" . ### https://w3id.org/tvbo/coupling_functions/PreSigmoidal/parameters/theta rdf:type owl:NamedIndividual , ; "Threshold" ; "0.5"^^xsd:double ; rdfs:label "theta (PreSigmoidal parameter)" ; "theta" . ### https://w3id.org/tvbo/coupling_functions/Scaling/parameters/a rdf:type owl:NamedIndividual , ; "Linear scaling factor of the coupled (delayed) input." ; "0.00390625"^^xsd:double ; rdfs:label "a (Scaling parameter)" ; "a" . ### https://w3id.org/tvbo/coupling_functions/Sigmoidal/parameters/a rdf:type owl:NamedIndividual , ; "Scaling of sigmoidal" ; "1.0"^^xsd:double ; rdfs:label "a (Sigmoidal parameter)" ; "a" . ### https://w3id.org/tvbo/coupling_functions/Sigmoidal/parameters/cmax rdf:type owl:NamedIndividual , ; "Maximum of the sigmoid function" ; "1.0"^^xsd:double ; rdfs:label "cmax (Sigmoidal parameter)" ; "cmax" . ### https://w3id.org/tvbo/coupling_functions/Sigmoidal/parameters/cmin rdf:type owl:NamedIndividual , ; "Minimum of sigmoid function" ; "-1.0"^^xsd:double ; rdfs:label "cmin (Sigmoidal parameter)" ; "cmin" . ### https://w3id.org/tvbo/coupling_functions/Sigmoidal/parameters/midpoint rdf:type owl:NamedIndividual , ; "0.0"^^xsd:double ; rdfs:label "midpoint (Sigmoidal parameter)" ; "midpoint" . ### https://w3id.org/tvbo/coupling_functions/Sigmoidal/parameters/sigma rdf:type owl:NamedIndividual , ; "230.0"^^xsd:double ; rdfs:label "sigma (Sigmoidal parameter)" ; "sigma" . ### https://w3id.org/tvbo/coupling_functions/SigmoidalJansenRit/parameters/a rdf:type owl:NamedIndividual , ; "Scaling of the coupling term" ; "1.0"^^xsd:double ; rdfs:label "a (SigmoidalJansenRit parameter)" ; "a" . ### https://w3id.org/tvbo/coupling_functions/SigmoidalJansenRit/parameters/cmax rdf:type owl:NamedIndividual , ; "Maximum of the Sigmoid function" ; "0.005"^^xsd:double ; rdfs:label "cmax (SigmoidalJansenRit parameter)" ; "cmax" . ### https://w3id.org/tvbo/coupling_functions/SigmoidalJansenRit/parameters/cmin rdf:type owl:NamedIndividual , ; "minimum of the Sigmoid function" ; "0.0"^^xsd:double ; rdfs:label "cmin (SigmoidalJansenRit parameter)" ; "cmin" . ### https://w3id.org/tvbo/coupling_functions/SigmoidalJansenRit/parameters/midpoint rdf:type owl:NamedIndividual , ; "Midpoint of the linear portion of the sigmoid" ; "6.0"^^xsd:double ; rdfs:label "midpoint (SigmoidalJansenRit parameter)" ; "midpoint" . ### https://w3id.org/tvbo/coupling_functions/SigmoidalJansenRit/parameters/r rdf:type owl:NamedIndividual , ; "The steepness of the sigmoidal transformation" ; "0.56"^^xsd:double ; rdfs:label "r (SigmoidalJansenRit parameter)" ; "r" . ### https://w3id.org/tvbo/experiments/EI_Tuning_FIC_EIB_Optimization rdf:type owl:NamedIndividual , ; """Fitting functional connectivity using the two-population Reduced Wong-Wang model with explicit excitatory and inhibitory populations. Combines Feedback Inhibition Control (FIC) to maintain local E-I balance with EIB tuning to globally optimize network connectivity. Supports both iterative (FIC+EIB) and gradient-based optimization approaches. """ ; rdfs:label "EI Tuning: Functional Connectivity Fitting" . ### https://w3id.org/tvbo/experiments/JR_MEG_FrequencyGradient_Optimization rdf:type owl:NamedIndividual , ; """Reproducing MEG Resting-State Frequency Gradients with Network Dynamics. This experiment fits region-specific Jansen-Rit parameters to reproduce the empirical frequency gradient from visual cortex (11 Hz) to association areas (7 Hz). """ ; rdfs:label "JR Peak Frequency Optimization" . ### https://w3id.org/tvbo/experiments/RWW_BOLD_FC_Optimization rdf:type owl:NamedIndividual , ; """Fitting functional connectivity using the Reduced Wong-Wang model. Two-stage optimization: global parameters first, then regional heterogeneity. Based on tvboptim RWW.qmd tutorial. """ ; rdfs:label "RWW Functional Connectivity Fitting" . ### https://w3id.org/tvbo/experiments/RateML_ReducedWongWang rdf:type owl:NamedIndividual , ; rdfs:label "RateML rwongwang ground truth" . ### https://w3id.org/tvbo/experiments/Schirner2023_MultiscaleBNM_DM rdf:type owl:NamedIndividual , ; """Multiscale brain network model coupling large-scale structural connectivity with a small-scale frontoparietal circuit for decision-making (DM) and working memory (WM). The large-scale model uses the Reduced Wong-Wang model (Deco et al., 2014, JNeurosci) with explicit excitatory and inhibitory populations. The functional circuit implements winner-take-all DM and persistent-activity WM based on Murray, Jaramillo & Wang (2017, JNeurosci). Key innovation: The ratio of long-range excitation (LRE) to feedforward inhibition (FFI) controls functional connectivity between brain regions. This E/I balance tuning enables fitting personalized brain network models to empirical functional connectivity and explains individual differences in cognitive performance (speed-accuracy trade-off in intelligence tests). """ ; rdfs:label "Multiscale BNM: Decision-Making with E/I Balance Tuning" . ### https://w3id.org/tvbo/integrators/Dopri5 rdf:type owl:NamedIndividual , ; rdfs:label "Dopri5" . ### https://w3id.org/tvbo/integrators/Dopri853 rdf:type owl:NamedIndividual , ; rdfs:label "Dopri853" . ### https://w3id.org/tvbo/integrators/Euler rdf:type owl:NamedIndividual , ; rdfs:label "Euler" . ### https://w3id.org/tvbo/integrators/Heun rdf:type owl:NamedIndividual , ; rdfs:label "Heun" . ### https://w3id.org/tvbo/integrators/Identity rdf:type owl:NamedIndividual , ; rdfs:label "Identity" . ### https://w3id.org/tvbo/integrators/RungeKutta4thOrder rdf:type owl:NamedIndividual , ; rdfs:label "RungeKutta4thOrder" . ### https://w3id.org/tvbo/integrators/VODE rdf:type owl:NamedIndividual , ; rdfs:label "VODE" . ### https://w3id.org/tvbo/networks/SmileyNetwork rdf:type owl:NamedIndividual , ; rdfs:label "SmileyNetwork" ; . ### https://w3id.org/tvbo/networks/acq-EEGBrainstorm65_sensors rdf:type owl:NamedIndividual , ; "65-channel EEG sensor array (Brainstorm default). Positions in mm, Brainstorm coordinate space." ; rdfs:label "acq-EEGBrainstorm65_sensors" ; "EEG Brainstorm 65" ; . ### https://w3id.org/tvbo/networks/acq-MEGBrainstorm276_sensors rdf:type owl:NamedIndividual , ; "276-channel MEG sensor array (Brainstorm default). Positions and orientations in mm." ; rdfs:label "acq-MEGBrainstorm276_sensors" ; "MEG Brainstorm 276" ; . ### https://w3id.org/tvbo/networks/acq-SEEG588_sensors rdf:type owl:NamedIndividual , ; "588-contact stereo-EEG array (TVB default). Intracranial depth electrodes. No precomputed projection — gain is computed analytically." ; rdfs:label "acq-SEEG588_sensors" ; "SEEG 588 contacts" ; . ### https://w3id.org/tvbo/networks/example_3node_network rdf:type owl:NamedIndividual , ; "Example network with 3 nodes and two different coupling types (excitatory and inhibitory)" ; rdfs:label "example_3node_network" ; "Simple 3-Node Network Example" ; , . ### https://w3id.org/tvbo/networks/sensors_eeg_standard1005_fsaverage_aparc_projection rdf:type owl:NamedIndividual , ; "MNE standard_1005 EEG sensors (MNI, mm) with fsaverage aparc projection gain matrix (sensors x regions)." ; rdfs:label "sensors_eeg_standard1005_fsaverage_aparc_projection" ; "EEG standard_1005 fsaverage projection" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-Hansen2022_atlas-Schaefer2018_seg-7Networks_scale-100_desc-SCFC_relmat rdf:type owl:NamedIndividual , ; "Schaefer2018 100-parcel 7Networks multi-graph network from Hansen et al. (2022). Contains structural connectivity (SC) from diffusion MRI tractography and functional connectivity (FC) from resting-state fMRI, both derived from the HCP Young Adult cohort. SC edge weights are log-transformed streamline counts normalized to [0, 1]. FC edge weights are Pearson correlations." ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-Hansen2022_atlas-Schaefer2018_seg-7Networks_scale-100_desc-SCFC_relmat" ; "Schaefer2018_100_7Networks_Hansen2022_SCFC" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_scale-1000_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_scale-1000_desc-SC_relmat" ; "Schaefer1000 (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat" ; "Schaefer2018_1000_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-100_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-100_desc-SC_relmat" ; "Schaefer2018_100_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-200_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-200_desc-SC_relmat" ; "Schaefer2018_200_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-300_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-300_desc-SC_relmat" ; "Schaefer2018_300_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-400_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-400_desc-SC_relmat" ; "Schaefer2018_400_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-500_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-500_desc-SC_relmat" ; "Schaefer2018_500_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-600_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-600_desc-SC_relmat" ; "Schaefer2018_600_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-700_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-700_desc-SC_relmat" ; "Schaefer2018_700_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-800_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-800_desc-SC_relmat" ; "Schaefer2018_800_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-900_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-900_desc-SC_relmat" ; "Schaefer2018_900_17Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-1000_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-1000_desc-SC_relmat" ; "Schaefer2018_1000_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-100_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-100_desc-SC_relmat" ; "Schaefer2018_100_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-200_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-200_desc-SC_relmat" ; "Schaefer2018_200_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-300_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-300_desc-SC_relmat" ; "Schaefer2018_300_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-400_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-400_desc-SC_relmat" ; "Schaefer2018_400_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-500_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-500_desc-SC_relmat" ; "Schaefer2018_500_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-600_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-600_desc-SC_relmat" ; "Schaefer2018_600_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-700_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-700_desc-SC_relmat" ; "Schaefer2018_700_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-800_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-800_desc-SC_relmat" ; "Schaefer2018_800_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-900_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-900_desc-SC_relmat" ; "Schaefer2018_900_7Networks_dTOR" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Schaefer2018_scale-1000_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Schaefer2018_scale-1000_desc-SC_relmat" ; "Schaefer1000 (MghUscHcp32)" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat" ; "Schaefer100017Networks (MghUscHcp32)" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-PPMI85_rec-PPMI85_atlas-Schaefer2018_scale-1000_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-PPMI85_rec-PPMI85_atlas-Schaefer2018_scale-1000_desc-SC_relmat" ; "Schaefer1000 (PPMI85)" ; . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-PPMI85_rec-PPMI85_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-FSLMNI152_cohort-PPMI85_rec-PPMI85_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat" ; "Schaefer100017Networks (PPMI85)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-HCPYA_rec-dTOR_atlas-HCPMMP1_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009bAsym_cohort-HCPYA_rec-dTOR_atlas-HCPMMP1_desc-SC_relmat" ; "hcpmmp1 (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-HCPYA_rec-dTOR_atlas-HCPMMP1_seg-ordered_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009bAsym_cohort-HCPYA_rec-dTOR_atlas-HCPMMP1_seg-ordered_desc-SC_relmat" ; "hcpmmp1ordered (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HCPMMP1_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009bAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HCPMMP1_desc-SC_relmat" ; "hcpmmp1 (MghUscHcp32)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HCPMMP1_seg-ordered_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009bAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HCPMMP1_seg-ordered_desc-SC_relmat" ; "hcpmmp1ordered (MghUscHcp32)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-PPMI85_rec-PPMI85_atlas-HCPMMP1_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009bAsym_cohort-PPMI85_rec-PPMI85_atlas-HCPMMP1_desc-SC_relmat" ; "hcpmmp1 (PPMI85)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-PPMI85_rec-PPMI85_atlas-HCPMMP1_seg-ordered_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009bAsym_cohort-PPMI85_rec-PPMI85_atlas-HCPMMP1_seg-ordered_desc-SC_relmat" ; "hcpmmp1ordered (PPMI85)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_desc-surf_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_desc-surf_relmat" ; "Lobar8 surface (fsaverage 164k, 327684 vertices)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_hemi-L_desc-surf_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_hemi-L_desc-surf_relmat" ; "Lobar8 LH surface (fsaverage 164k, 163842 vertices)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_hemi-R_desc-surf_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_hemi-R_desc-surf_relmat" ; "Lobar8 RH surface (fsaverage 164k, 163842 vertices)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-DesikanKilliany_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-DesikanKilliany_desc-SC_relmat" ; "DesikanKilliany (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Destrieux_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Destrieux_desc-SC_relmat" ; "Destrieux (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-HCPex_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-HCPex_desc-SC_relmat" ; "HCPex (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar8_desc-SCFC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar8_desc-SCFC_relmat" ; "Lobar8 (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar_desc-SC_relmat" ; "Lobar (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar_desc-surf_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar_desc-surf_relmat" ; "Lobar surface (fsLR 32k, 64984 vertices)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Yeo17_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Yeo17_desc-SC_relmat" ; "Yeo17 (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-virtualdbs_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-virtualdbs_desc-SC_relmat" ; "virtualdbs (dTOR)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-DesikanKilliany_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-DesikanKilliany_desc-SC_relmat" ; "DesikanKilliany (MghUscHcp32)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Destrieux_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Destrieux_desc-SC_relmat" ; "Destrieux (MghUscHcp32)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HOCPA_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HOCPA_desc-SC_relmat" ; "HOCPA (MghUscHcp32)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Yeo17_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Yeo17_desc-SC_relmat" ; "Yeo17 (MghUscHcp32)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-virtualdbs_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-virtualdbs_desc-SC_relmat" ; "virtualdbs (MghUscHcp32)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-DesikanKilliany_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-DesikanKilliany_desc-SC_relmat" ; "DesikanKilliany (PPMI85)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-Destrieux_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-Destrieux_desc-SC_relmat" ; "Destrieux (PPMI85)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-Yeo17_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-Yeo17_desc-SC_relmat" ; "Yeo17 (PPMI85)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-virtualdbs_desc-SC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-virtualdbs_desc-SC_relmat" ; "virtualdbs (PPMI85)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_rec-avgMatrix_atlas-DesikanKilliany_desc-SCFC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_rec-avgMatrix_atlas-DesikanKilliany_desc-SCFC_relmat" ; "DesikanKilliany (avgMatrix SC+FC)" ; . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_rec-avgMatrix_atlas-Lobar8_desc-SCFC_relmat rdf:type owl:NamedIndividual , ; rdfs:label "tpl-MNI152NLin2009cAsym_rec-avgMatrix_atlas-Lobar8_desc-SCFC_relmat" ; "Lobar8 (avgMatrix)" ; . ### https://w3id.org/tvbo/networks/tpl-fsaverage_acq-EEGstandard1005_atlas-DesikanKilliany_desc-projection_sensors rdf:type owl:NamedIndividual , ; "MNE standard_1005 EEG sensors (MNI, mm) with fsaverage aparc projection gain matrix (sensors x regions)." ; rdfs:label "tpl-fsaverage_acq-EEGstandard1005_atlas-DesikanKilliany_desc-projection_sensors" ; "EEG standard_1005 fsaverage projection" ; . ### https://w3id.org/tvbo/networks/SmileyNetwork/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (SmileyNetwork parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/acq-EEGBrainstorm65_sensors/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (acq-EEGBrainstorm65_sensors parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/acq-MEGBrainstorm276_sensors/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (acq-MEGBrainstorm276_sensors parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/acq-SEEG588_sensors/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (acq-SEEG588_sensors parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/example_3node_network/parameters/G rdf:type owl:NamedIndividual , ; "1.0"^^xsd:double ; rdfs:label "G (example_3node_network parameter)" ; "G" . ### https://w3id.org/tvbo/networks/example_3node_network/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (example_3node_network parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/sensors_eeg_standard1005_fsaverage_aparc_projection/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (sensors_eeg_standard1005_fsaverage_aparc_projection parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-Hansen2022_atlas-Schaefer2018_seg-7Networks_scale-100_desc-SCFC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-Hansen2022_atlas-Schaefer2018_seg-7Networks_scale-100_desc-SCFC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_scale-1000_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_scale-1000_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-100_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-100_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-200_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-200_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-300_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-300_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-400_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-400_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-500_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-500_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-600_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-600_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-700_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-700_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-800_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-800_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-900_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-17Networks_scale-900_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-1000_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-1000_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-100_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-100_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-200_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-200_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-300_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-300_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-400_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-400_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-500_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-500_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-600_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-600_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-700_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-700_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-800_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-800_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-900_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-HCPYA_rec-dTOR_atlas-Schaefer2018_seg-7Networks_scale-900_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Schaefer2018_scale-1000_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Schaefer2018_scale-1000_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-PPMI85_rec-PPMI85_atlas-Schaefer2018_scale-1000_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-PPMI85_rec-PPMI85_atlas-Schaefer2018_scale-1000_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-FSLMNI152_cohort-PPMI85_rec-PPMI85_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-FSLMNI152_cohort-PPMI85_rec-PPMI85_atlas-Schaefer2018_seg-17Networks_scale-1000_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-HCPYA_rec-dTOR_atlas-HCPMMP1_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009bAsym_cohort-HCPYA_rec-dTOR_atlas-HCPMMP1_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-HCPYA_rec-dTOR_atlas-HCPMMP1_seg-ordered_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009bAsym_cohort-HCPYA_rec-dTOR_atlas-HCPMMP1_seg-ordered_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HCPMMP1_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009bAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HCPMMP1_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HCPMMP1_seg-ordered_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009bAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HCPMMP1_seg-ordered_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-PPMI85_rec-PPMI85_atlas-HCPMMP1_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009bAsym_cohort-PPMI85_rec-PPMI85_atlas-HCPMMP1_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009bAsym_cohort-PPMI85_rec-PPMI85_atlas-HCPMMP1_seg-ordered_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009bAsym_cohort-PPMI85_rec-PPMI85_atlas-HCPMMP1_seg-ordered_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_desc-surf_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_desc-surf_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_hemi-L_desc-surf_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_hemi-L_desc-surf_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_hemi-R_desc-surf_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_atlas-Lobar8_hemi-R_desc-surf_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-DesikanKilliany_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-DesikanKilliany_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Destrieux_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Destrieux_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-HCPex_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-HCPex_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar8_desc-SCFC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar8_desc-SCFC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar_desc-surf_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Lobar_desc-surf_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Yeo17_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-Yeo17_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-virtualdbs_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-HCPYA_rec-dTOR_atlas-virtualdbs_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-DesikanKilliany_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-DesikanKilliany_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Destrieux_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Destrieux_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HOCPA_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-HOCPA_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Yeo17_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-Yeo17_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-virtualdbs_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-MghUscHcp32_rec-MghUscHcp32_atlas-virtualdbs_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-DesikanKilliany_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-DesikanKilliany_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-Destrieux_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-Destrieux_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-Yeo17_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-Yeo17_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-virtualdbs_desc-SC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_cohort-PPMI85_rec-PPMI85_atlas-virtualdbs_desc-SC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_rec-avgMatrix_atlas-DesikanKilliany_desc-SCFC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_rec-avgMatrix_atlas-DesikanKilliany_desc-SCFC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-MNI152NLin2009cAsym_rec-avgMatrix_atlas-Lobar8_desc-SCFC_relmat/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-MNI152NLin2009cAsym_rec-avgMatrix_atlas-Lobar8_desc-SCFC_relmat parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/networks/tpl-fsaverage_acq-EEGstandard1005_atlas-DesikanKilliany_desc-projection_sensors/parameters/conduction_speed rdf:type owl:NamedIndividual , ; "3.0"^^xsd:double ; rdfs:label "conduction_speed (tpl-fsaverage_acq-EEGstandard1005_atlas-DesikanKilliany_desc-projection_sensors parameter)" ; "conduction_speed" ; "mm_per_ms" . ### https://w3id.org/tvbo/observation_models/FC rdf:type owl:NamedIndividual , ; "Functional Connectivity (FC) observation model that computes pairwise Pearson correlation coefficients between regional time series. Commonly used to characterize the statistical dependencies between brain regions from fMRI or simulated neural activity." ; rdfs:label "FunctionalConnectivity" ; , . ### https://w3id.org/tvbo/observation_models/afferent_coupling rdf:type owl:NamedIndividual , ; "Records the afferent (incoming) coupling term at each network node at every integration step. Records the coupling input that drives the dynamics rather than the model state itself." ; rdfs:label "AfferentCoupling" . ### https://w3id.org/tvbo/observation_models/afferent_coupling_temporal_average rdf:type owl:NamedIndividual , ; "Temporally averaged afferent coupling input at each node. Combines coupling input recording with temporal averaging." ; rdfs:label "AfferentCouplingTemporalAverage" . ### https://w3id.org/tvbo/observation_models/bold_double_exponential rdf:type owl:NamedIndividual , ; "BOLD fMRI observation model using a Double Exponential hemodynamic response function." ; rdfs:label "BOLD_DoubleExponential" ; . ### https://w3id.org/tvbo/observation_models/bold_gamma rdf:type owl:NamedIndividual , ; "BOLD fMRI observation model using a Gamma-shaped hemodynamic response function. Provides a simpler, unimodal HRF shape." ; rdfs:label "BOLD_Gamma" ; . ### https://w3id.org/tvbo/observation_models/bold_mixture_of_gammas rdf:type owl:NamedIndividual , ; "BOLD fMRI observation model using the canonical double-gamma hemodynamic response function (Glover 1999). Standard HRF used in most fMRI analysis packages (SPM, FSL, AFNI)." ; rdfs:label "BOLD_MixtureOfGammas" ; . ### https://w3id.org/tvbo/observation_models/bold_region_roi rdf:type owl:NamedIndividual , ; "BOLD fMRI observation model that computes the hemodynamic response at each source location and spatially averages within brain regions using a parcellation mapping. Produces per-region BOLD signals suitable for comparison with parcellated empirical data." ; rdfs:label "BOLD_RegionROI" ; . ### https://w3id.org/tvbo/observation_models/bold_tvb rdf:type owl:NamedIndividual , ; "BOLD fMRI observation model using the Balloon-Windkessel hemodynamic model. Transforms neural activity into simulated BOLD signal via convolution with a hemodynamic response function (First Order Volterra kernel), followed by a nonlinear Volterra transformation." ; rdfs:label "BOLD_TVB" ; . ### https://w3id.org/tvbo/observation_models/eeg rdf:type owl:NamedIndividual , ; "Forward solution for scalp electroencephalography. Projects source neural activity through a lead field (gain) matrix to electrode locations on the scalp. If no precomputed gain is available, uses a single-sphere analytic approximation (Sarvas 1987, Eq. 12). Supports re-referencing: common average, single-electrode, or ideal reference-free recording." ; rdfs:label "EEG" ; , . ### https://w3id.org/tvbo/observation_models/global_average rdf:type owl:NamedIndividual , ; "Spatial mean across all network nodes at each sampling period. Reduces spatial dimension to a single global signal per state variable." ; rdfs:label "GlobalAverage" . ### https://w3id.org/tvbo/observation_models/ieeg rdf:type owl:NamedIndividual , ; "Forward solution for intracranial/stereoelectroencephalography (SEEG). Projects source activity through a lead field matrix to implanted depth electrode contacts. Uses the same single-sphere analytic formula as scalp EEG (Sarvas 1987, Eq. 12), but with electrode positions inside the brain volume." ; rdfs:label "iEEG" ; . ### https://w3id.org/tvbo/observation_models/meg rdf:type owl:NamedIndividual , ; "Forward solution for magnetoencephalography. Projects source neural activity through a lead field matrix to MEG sensor locations using oriented gradiometers. If no precomputed gain is available, uses the single-sphere analytic formula (Sarvas 1987, Eq. 25) for the magnetic field produced by current dipoles in a conducting sphere." ; rdfs:label "MEG" ; . ### https://w3id.org/tvbo/observation_models/raw rdf:type owl:NamedIndividual , ; "Records all state variables at every integration step without any transformation. Identity passthrough of the full simulation state." ; rdfs:label "Raw" . ### https://w3id.org/tvbo/observation_models/spatial_average rdf:type owl:NamedIndividual , ; "Computes spatially averaged signals within regions defined by a spatial mask (node-to-region assignment). The mask assigns each node to a region index, and the output is the mean signal per region." ; rdfs:label "SpatialAverage" ; . ### https://w3id.org/tvbo/observation_models/subsample rdf:type owl:NamedIndividual , ; "Temporal decimation of selected state variables. Records every N-th integration step without any averaging or smoothing." ; rdfs:label "SubSample" . ### https://w3id.org/tvbo/observation_models/temporal_average rdf:type owl:NamedIndividual , ; "Running temporal mean over a sliding window of configurable length. Returns one averaged sample per period." ; rdfs:label "TemporalAverage" . ### https://w3id.org/tvbo/observation_models/FC/parameters/TR rdf:type owl:NamedIndividual , ; "Repetition time" ; "720.0"^^xsd:double ; rdfs:label "TR (FC parameter)" ; "TR" ; "ms" . ### https://w3id.org/tvbo/observation_models/FC/parameters/fisher_z rdf:type owl:NamedIndividual , ; "Apply Fisher z-transformation to correlations" ; "true"^^xsd:boolean ; rdfs:label "fisher_z (FC parameter)" ; "fisher_z" . ### https://w3id.org/tvbo/observation_models/bold_double_exponential/parameters/TR rdf:type owl:NamedIndividual , ; "2000.0"^^xsd:double ; rdfs:label "TR (bold_double_exponential parameter)" ; "TR" ; "ms" . ### https://w3id.org/tvbo/observation_models/bold_gamma/parameters/TR rdf:type owl:NamedIndividual , ; "2000.0"^^xsd:double ; rdfs:label "TR (bold_gamma parameter)" ; "TR" ; "ms" . ### https://w3id.org/tvbo/observation_models/bold_mixture_of_gammas/parameters/TR rdf:type owl:NamedIndividual , ; "2000.0"^^xsd:double ; rdfs:label "TR (bold_mixture_of_gammas parameter)" ; "TR" ; "ms" . ### https://w3id.org/tvbo/observation_models/bold_region_roi/parameters/hrf_length rdf:type owl:NamedIndividual , ; "20000.0"^^xsd:double ; rdfs:label "hrf_length (bold_region_roi parameter)" ; "hrf_length" ; "ms" . ### https://w3id.org/tvbo/observation_models/bold_tvb/parameters/TR rdf:type owl:NamedIndividual , ; "Repetition time (sampling period)" ; "720.0"^^xsd:double ; rdfs:label "TR (bold_tvb parameter)" ; "TR" ; "ms" . ### https://w3id.org/tvbo/observation_models/eeg/parameters/conductivity rdf:type owl:NamedIndividual , ; "Volume conductor conductivity for the single-sphere analytic approximation. Only used when no precomputed gain is available." ; "1.0"^^xsd:double ; rdfs:label "conductivity (eeg parameter)" ; "conductivity" ; "S_per_m" . ### https://w3id.org/tvbo/observation_models/eeg/parameters/reference_electrode rdf:type owl:NamedIndividual , ; "Re-referencing scheme. Options: - Electrode label (e.g. \"Cz\"): subtract that electrode signal - \"average\": subtract mean across all channels - null: ideal reference-free recording" ; rdfs:label "reference_electrode (eeg parameter)" ; "reference_electrode" . ### https://w3id.org/tvbo/observation_models/ieeg/parameters/conductivity rdf:type owl:NamedIndividual , ; "Tissue conductivity for the analytic point-dipole approximation. Only used when no precomputed gain is available." ; "1.0"^^xsd:double ; rdfs:label "conductivity (ieeg parameter)" ; "conductivity" ; "S_per_m" . ### https://w3id.org/tvbo/observation_models/meg/parameters/permeability rdf:type owl:NamedIndividual , ; "Magnetic constant (permeability of free space)" ; "1.256637E-6"^^xsd:double ; rdfs:label "permeability (meg parameter)" ; "permeability" ; "H_per_m" . ### https://w3id.org/tvbo/observation_models/spatial_average/parameters/spatial_mask rdf:type owl:NamedIndividual , ; "Vector of length N_nodes mapping each node to a region index (0-indexed). Inferred from network topology if not provided." ; rdfs:label "spatial_mask (spatial_average parameter)" ; "spatial_mask" . ### https://w3id.org/tvbo/software/AUTO-07p rdf:type owl:NamedIndividual , ; "A software package for continuation and bifurcation problems in ordinary differential equations. The standard tool for numerical continuation in dynamical systems since 1980." ; "BSD-2-Clause" ; "https://github.com/auto-07p/auto-07p" ; "10.1007/978-1-4614-6141-2_3" ; "https://github.com/auto-07p/auto-07p" ; rdfs:label "AUTO-07p" . ### https://w3id.org/tvbo/software/Arbor rdf:type owl:NamedIndividual , ; "A high-performance library for computational neuroscience simulation with native support for morphologically detailed neuron models on modern hardware including GPUs and many-core CPUs." ; "BSD-2-Clause" ; "https://github.com/arbor-sim/arbor" ; "10.5281/zenodo.1459679" ; "https://arbor-sim.org" ; rdfs:label "Arbor" . ### https://w3id.org/tvbo/software/BSB rdf:type owl:NamedIndividual , ; "Brain Scaffold Builder — a framework for reconstructing and simulating data-driven brain tissue models using morphological and connectivity scaffolds." ; "Apache-2.0" ; "https://github.com/dbbs-lab/bsb-core" ; "https://bsb.readthedocs.io" ; rdfs:label "BSB" . ### https://w3id.org/tvbo/software/BifurcationKit.jl rdf:type owl:NamedIndividual , ; "A Julia package for bifurcation analysis of large-dimensional equations. Supports continuation of equilibria, periodic orbits, and detection of bifurcation points for ODE and PDE systems." ; "MIT" ; "https://github.com/bifurcationkit/BifurcationKit.jl" ; "10.21105/joss.06316" ; "https://bifurcationkit.github.io/BifurcationKitDocs.jl/stable/" ; rdfs:label "BifurcationKit.jl" . ### https://w3id.org/tvbo/software/BluePyOpt rdf:type owl:NamedIndividual , ; "Blue Brain Python Optimisation Library — a framework for data-driven model parameter optimisation using multi-objective evolutionary algorithms on NEURON models." ; "LGPL-3.0-only" ; "https://github.com/BlueBrain/BluePyOpt" ; "10.3389/fninf.2016.00017" ; "https://bluepyopt.readthedocs.io" ; rdfs:label "BluePyOpt" . ### https://w3id.org/tvbo/software/BrainBrowser rdf:type owl:NamedIndividual , ; "A set of JavaScript visualization tools for rendering brain surfaces, volumes, and connectivity data in the browser using WebGL." ; "MIT" ; "https://github.com/aces/brainbrowser" ; "https://brainbrowser.cbrain.mcgill.ca" ; rdfs:label "BrainBrowser" . ### https://w3id.org/tvbo/software/BrainPy rdf:type owl:NamedIndividual , ; "A flexible, efficient, and extensible framework for computational neuroscience and brain-inspired computation built on JAX. Supports spiking, rate-based, and mean-field models at all scales." ; "Apache-2.0" ; "https://github.com/brainpy/BrainPy" ; "10.7554/eLife.86365" ; "https://brainpy.readthedocs.io" ; rdfs:label "BrainPy" . ### https://w3id.org/tvbo/software/BrainSimII rdf:type owl:NamedIndividual , ; "A neural simulator exploring AGI-inspired approaches to brain simulation, with a focus on large-scale spiking neuron models and real-time interaction." ; "MIT" ; "https://github.com/FutureAIGuru/BrainSimII" ; rdfs:label "BrainSimII" . ### https://w3id.org/tvbo/software/Brainstorm rdf:type owl:NamedIndividual , ; "A collaborative, open-source application for MEG/EEG/sEEG/ECoG/fNIRS data analysis, visualization, and source localization." ; "GPL-3.0-only" ; "https://github.com/brainstorm-tools/brainstorm3" ; "10.1155/2011/879716" ; "https://neuroimage.usc.edu/brainstorm/" ; rdfs:label "Brainstorm" . ### https://w3id.org/tvbo/software/Brian2 rdf:type owl:NamedIndividual , ; "A simulator for spiking neural networks. Equations are specified in standard mathematical notation, and Brian2 automatically generates efficient C++ code for numerical integration." ; "CeCILL-2.1" ; "https://github.com/brian-team/brian2" ; "10.7554/eLife.47314" ; "https://brian2.readthedocs.io" ; rdfs:label "Brian2" . ### https://w3id.org/tvbo/software/CARLsim rdf:type owl:NamedIndividual , ; "An efficient, easy-to-use, GPU-accelerated library for simulating large-scale spiking neural network models with conductance-based synapses, STDP, and neuromodulation." ; "MIT" ; "https://github.com/UCI-CARL/CARLsim6" ; "https://uci-carl.github.io/CARLsim6/" ; rdfs:label "CARLsim" . ### https://w3id.org/tvbo/software/CoreNEURON rdf:type owl:NamedIndividual , ; "Optimized compute engine for the NEURON simulator. Provides efficient execution of NEURON models on CPUs and GPUs using NMODL code generation." ; "BSD-3-Clause" ; "https://github.com/BlueBrain/CoreNeuron" ; "https://github.com/BlueBrain/CoreNeuron" ; rdfs:label "CoreNEURON" . ### https://w3id.org/tvbo/software/CxSystem2 rdf:type owl:NamedIndividual , ; "A simulation framework for cortical microcircuit models with support for data-driven customization and modular circuit specification. Uses Brian2 as its simulation backend." ; "MIT" ; "https://github.com/VisualNeuroscience-UH/CxSystem2" ; "10.1016/j.neucom.2019.11.004" ; "https://cxsystem2.readthedocs.io" ; rdfs:label "CxSystem2" . ### https://w3id.org/tvbo/software/DifferentialEquations.jl rdf:type owl:NamedIndividual , ; "A suite for numerically solving differential equations in Julia. Supports ODEs, SDEs, DAEs, DDEs, and PDEs with a unified interface, high performance, and extensive algorithm selection." ; "MIT" ; "https://github.com/SciML/DifferentialEquations.jl" ; "10.5334/jors.151" ; "https://docs.sciml.ai/DiffEqDocs/stable/" ; rdfs:label "DifferentialEquations.jl" . ### https://w3id.org/tvbo/software/EEGLAB rdf:type owl:NamedIndividual , ; "An interactive MATLAB toolbox for processing continuous and event-related EEG, MEG, and other electrophysiological data using independent component analysis, time/frequency analysis, and other methods." ; "BSD-2-Clause" ; "https://github.com/sccn/eeglab" ; "10.1016/j.jneumeth.2003.10.009" ; "https://eeglab.org" ; rdfs:label "EEGLAB" . ### https://w3id.org/tvbo/software/Elephant rdf:type owl:NamedIndividual , ; "Electrophysiology Analysis Toolkit — a Python library for the analysis of electrophysiological data, including spike-train statistics, spectral analysis, and unitary event analysis." ; "BSD-3-Clause" ; "https://github.com/NeuralEnsemble/elephant" ; "10.5281/zenodo.1186602" ; "https://elephant.readthedocs.io" ; rdfs:label "Elephant" . ### https://w3id.org/tvbo/software/FastDMF rdf:type owl:NamedIndividual , ; "A fast C++ implementation of the Dynamic Mean Field (DMF) model for whole-brain simulation, with Python bindings. Optimized for rapid parameter exploration on connectome data." ; "MIT" ; "https://github.com/Picardian14/FastDMF" ; "10.3389/fncom.2022.866517" ; rdfs:label "FastDMF" . ### https://w3id.org/tvbo/software/FieldTrip rdf:type owl:NamedIndividual , ; "A MATLAB toolbox for MEG, EEG, iEEG and NIRS analysis, including preprocessing, source reconstruction, statistical testing, and connectivity analysis." ; "GPL-3.0-only" ; "https://github.com/fieldtrip/fieldtrip" ; "10.1155/2011/156869" ; "https://www.fieldtriptoolbox.org" ; rdfs:label "FieldTrip" . ### https://w3id.org/tvbo/software/GENESIS rdf:type owl:NamedIndividual , ; "GEneral NEural SImulation System — one of the earliest simulators for biologically realistic modeling of neural systems, from sub-cellular components to large networks." ; "GPL-2.0-only" ; "https://github.com/genesis-sim/genesis-2.4" ; "http://www.genesis-sim.org" ; rdfs:label "GENESIS" . ### https://w3id.org/tvbo/software/GeNN rdf:type owl:NamedIndividual , ; "GPU Enhanced Neuronal Networks — a framework for GPU-accelerated spiking neural network simulations using NVIDIA CUDA. Generates optimized GPU kernels from model descriptions." ; "GPL-2.0-only" ; "https://github.com/genn-team/genn" ; "10.1038/s43588-022-00222-7" ; "https://genn-team.github.io/genn/" ; rdfs:label "GeNN" . ### https://w3id.org/tvbo/software/HNN-core rdf:type owl:NamedIndividual , ; "Human Neocortical Neurosolver — a tool for simulating the cellular and network-level origin of MEG/EEG signals using biophysically detailed neocortical column models on NEURON." ; "BSD-3-Clause" ; "https://github.com/jonescompneurolab/hnn-core" ; "10.1523/ENEURO.0460-21.2022" ; "https://jonescompneurolab.github.io/hnn-core/" ; rdfs:label "HNN-core" . ### https://w3id.org/tvbo/software/LEMS rdf:type owl:NamedIndividual , ; "Low Entropy Model Specification — an XML-based language for defining the structure and dynamics of hierarchically structured models of biological systems. Foundation for NeuroML2." ; "MIT" ; "https://github.com/LEMS/jLEMS" ; "https://lems.github.io/LEMS/" ; rdfs:label "LEMS" . ### https://w3id.org/tvbo/software/LFPy rdf:type owl:NamedIndividual , ; "A Python module for calculating local field potentials (LFPs) and extracellular potentials from multicompartment neuron models using the line-source method on NEURON simulations." ; "GPL-3.0-only" ; "https://github.com/LFPy/LFPy" ; "10.3389/fninf.2013.00041" ; "https://lfpy.readthedocs.io" ; rdfs:label "LFPy" . ### https://w3id.org/tvbo/software/MCell rdf:type owl:NamedIndividual , ; "Monte Carlo Cell — a program for realistic simulation of cellular signaling using spatially realistic 3D models of sub-cellular reaction-diffusion dynamics." ; "GPL-2.0-only" ; "https://github.com/mcellteam/mcell" ; "10.1016/j.cpc.2016.06.013" ; "https://mcell.org" ; rdfs:label "MCell" . ### https://w3id.org/tvbo/software/MNE-Python rdf:type owl:NamedIndividual , ; "Open-source Python package for exploring, visualizing, and analyzing human neurophysiological data: MEG, EEG, sEEG, ECoG, NIRS, and more." ; "BSD-3-Clause" ; "https://github.com/mne-tools/mne-python" ; "10.3389/fnins.2013.00267" ; "https://mne.tools" ; rdfs:label "MNE-Python" . ### https://w3id.org/tvbo/software/MOOSE rdf:type owl:NamedIndividual , ; "Multiscale Object-Oriented Simulation Environment. Supports models from sub-cellular signaling to large networks, including reaction-diffusion, electrical, and chemical compartmental models." ; "GPL-3.0-only" ; "https://github.com/BhallaLab/moose-core" ; "10.3389/fninf.2014.00094" ; "https://moose.ncbs.res.in" ; rdfs:label "MOOSE" . ### https://w3id.org/tvbo/software/MatCont rdf:type owl:NamedIndividual , ; "A MATLAB continuation toolbox for interactive bifurcation analysis of dynamical systems. Computes equilibria, limit cycles, and bifurcation curves with graphical user interface." ; "GPL-3.0-only" ; "https://sourceforge.net/projects/matcont/" ; "https://sourceforge.net/projects/matcont/" ; rdfs:label "MatCont" . ### https://w3id.org/tvbo/software/ModelDB rdf:type owl:NamedIndividual , ; "A curated database of published computational neuroscience models. Provides source code and metadata for thousands of models linked to peer-reviewed publications." ; "https://modeldb.science" ; rdfs:label "ModelDB" . ### https://w3id.org/tvbo/software/NEST rdf:type owl:NamedIndividual , ; "NEST is a simulator for spiking neural network models that focuses on the dynamics, size, and structure of neural systems rather than on the exact morphology of individual neurons." ; "GPL-2.0-or-later" ; "https://github.com/nest/nest-simulator" ; "10.5281/zenodo.882971" ; "https://www.nest-simulator.org" ; rdfs:label "NEST" . ### https://w3id.org/tvbo/software/NEURON rdf:type owl:NamedIndividual , ; "NEURON is a simulation environment for modeling individual neurons and networks of neurons. It provides tools for constructing, managing, and using biophysically realistic models with active membranes." ; "BSD-3-Clause" ; "https://github.com/neuronsimulator/nrn" ; "10.3389/fninf.2009.00001" ; "https://www.neuron.yale.edu" ; rdfs:label "NEURON" . ### https://w3id.org/tvbo/software/NWB rdf:type owl:NamedIndividual , ; "Neurodata Without Borders — a data standard for neurophysiology providing a common format for storing diverse cellular and systems neuroscience data in HDF5 files." ; "BSD-3-Clause" ; "https://github.com/NeurodataWithoutBorders/pynwb" ; "10.7554/eLife.78362" ; "https://www.nwb.org" ; rdfs:label "NWB" . ### https://w3id.org/tvbo/software/Nengo rdf:type owl:NamedIndividual , ; "A Python library for building and simulating large-scale brain models using the Neural Engineering Framework (NEF). Supports spiking and rate-based neurons with backends including NumPy, TensorFlow (NengoDL), and neuromorphic hardware (NengoLoihi)." ; "MIT" ; "https://github.com/nengo/nengo" ; "10.3389/fninf.2013.00048" ; "https://www.nengo.ai" ; rdfs:label "Nengo" . ### https://w3id.org/tvbo/software/Neo rdf:type owl:NamedIndividual , ; "A Python package for representing electrophysiology data in a common object model independently of the data source. Core I/O library for the NeuralEnsemble ecosystem." ; "BSD-3-Clause" ; "https://github.com/NeuralEnsemble/python-neo" ; "10.3389/fninf.2014.00010" ; "https://neo.readthedocs.io" ; rdfs:label "Neo" . ### https://w3id.org/tvbo/software/NetPyNE rdf:type owl:NamedIndividual , ; "A high-level Python interface for NEURON that facilitates the development, simulation, and analysis of biological neuronal networks. Supports multiscale models from detailed to abstract." ; "MIT" ; "https://github.com/Neurosim-lab/netpyne" ; "10.7554/eLife.44494" ; "http://netpyne.org" ; rdfs:label "NetPyNE" . ### https://w3id.org/tvbo/software/NetworkDynamics.jl rdf:type owl:NamedIndividual , ; "A Julia package for simulating dynamics on networks. Provides an efficient interface for defining node and edge dynamics that compiles to optimized DifferentialEquations.jl ODE/SDE problems." ; "MIT" ; "https://github.com/PIK-ICoNe/NetworkDynamics.jl" ; "10.1063/5.0051387" ; "https://juliadynamics.github.io/NetworkDynamics.jl/stable/" ; rdfs:label "NetworkDynamics.jl" . ### https://w3id.org/tvbo/software/NeuroML rdf:type owl:NamedIndividual , ; "An XML-based model description language for computational neuroscience. Provides a standardized format for defining models of neurons, synapses, networks, and channels that can be simulated across multiple platforms." ; "LGPL-3.0-only" ; "https://github.com/NeuroML/NeuroML2" ; "10.1371/journal.pcbi.1008349" ; "https://neuroml.org" ; rdfs:label "NeuroML" . ### https://w3id.org/tvbo/software/Neuroblox.jl rdf:type owl:NamedIndividual , ; "A Julia package for building brain circuit models from composable neural mass and spiking \"blox\" components. Built on ModelingToolkit.jl for symbolic model construction and automatic differentiation." ; "MIT" ; "https://github.com/Neuroblox/Neuroblox.jl" ; "https://docs.neuroblox.org" ; rdfs:label "Neuroblox.jl" . ### https://w3id.org/tvbo/software/Neurofitter rdf:type owl:NamedIndividual , ; "A parameter optimization tool for neuroscience models. Uses evolutionary algorithms to fit model parameters to experimental electrophysiology data." ; "GPL-2.0-only" ; "https://github.com/ModelDBRepository/64261" ; rdfs:label "Neurofitter" . ### https://w3id.org/tvbo/software/NineML rdf:type owl:NamedIndividual , ; "A language for describing the dynamics and connectivity of spiking neuronal network models. Designed by the INCF to enable simulator-independent model exchange." ; "BSD-2-Clause" ; "https://github.com/INCF/nineml-spec" ; "https://nineml.net" ; rdfs:label "NineML" . ### https://w3id.org/tvbo/software/OpenSourceBrain rdf:type owl:NamedIndividual , ; "A platform for sharing and collaboratively developing computational neuroscience models in standardized formats, primarily NeuroML." ; "LGPL-3.0-only" ; "https://github.com/OpenSourceBrain" ; "https://www.opensourcebrain.org" ; rdfs:label "Open Source Brain" . ### https://w3id.org/tvbo/software/OpenWorm rdf:type owl:NamedIndividual , ; "An open science project to build a comprehensive computational model of the C. elegans nematode, including its 302-neuron nervous system." ; "MIT" ; "https://github.com/openworm/OpenWorm" ; "http://openworm.org" ; rdfs:label "OpenWorm" . ### https://w3id.org/tvbo/software/PSICS rdf:type owl:NamedIndividual , ; "Parallel Stochastic Ion Channel Simulator — a fast simulator for stochastic ion channel models in morphologically detailed neurons using efficient population-based algorithms." ; "MPL-2.0" ; "https://github.com/BorgwardtLab/PSICS" ; rdfs:label "PSICS" . ### https://w3id.org/tvbo/software/PyNN rdf:type owl:NamedIndividual , ; "A Python package for simulator-independent specification of spiking neuronal network models. Provides a common API for NEST, NEURON, Brian2, GeNN, and SpiNNaker backends." ; "CeCILL-2.0" ; "https://github.com/NeuralEnsemble/PyNN" ; "10.3389/fninf.2008.00011" ; "https://neuralensemble.org/PyNN/" ; rdfs:label "PyNN" . ### https://w3id.org/tvbo/software/PyRates rdf:type owl:NamedIndividual , ; "A Python framework for rate-based and neural mass network simulations. Provides symbolic equation parsing, automatic code generation, and parameter continuation support." ; "BSD-3-Clause" ; "https://github.com/pyrates-neuroscience/PyRates" ; "10.1371/journal.pone.0244637" ; "https://pyrates.readthedocs.io" ; rdfs:label "PyRates" . ### https://w3id.org/tvbo/software/PyRhO rdf:type owl:NamedIndividual , ; "A Python module for fitting, simulating, and analyzing optogenetic rhodopsin photocurrent models. Integrates with NEURON and Brian2." ; "BSD-3-Clause" ; "https://github.com/ProjectPyRhO/PyRhO" ; "10.3389/fninf.2016.00008" ; "https://pyrho.readthedocs.io" ; rdfs:label "PyRhO" . ### https://w3id.org/tvbo/software/SONATA rdf:type owl:NamedIndividual , ; "Scalable Open Network Architecture ToolKit and Application — a data format specification for storing large-scale neural network models and simulation results. Joint Allen Institute / Blue Brain standard." ; "BSD-3-Clause" ; "https://github.com/AllenInstitute/sonata" ; "https://github.com/AllenInstitute/sonata/blob/master/docs/SONATA_DEVELOPER_GUIDE.md" ; rdfs:label "SONATA" . ### https://w3id.org/tvbo/software/SPM rdf:type owl:NamedIndividual , ; "Statistical Parametric Mapping — software for the analysis of brain imaging data sequences (fMRI, PET, SPECT, EEG, MEG). Standard tool for voxel-based and DCM analyses." ; "GPL-2.0-or-later" ; "https://github.com/spm/spm" ; "10.1016/B978-012372560-8/50002-4" ; "https://www.fil.ion.ucl.ac.uk/spm/" ; rdfs:label "SPM" . ### https://w3id.org/tvbo/software/STEPS rdf:type owl:NamedIndividual , ; "STochastic Engine for Pathway Simulation — a stochastic reaction-diffusion simulator for modeling biochemical signaling pathways in realistic 3D cellular morphologies." ; "GPL-3.0-only" ; "https://github.com/CNS-OIST/STEPS" ; "10.3389/fninf.2014.00068" ; "https://steps.sourceforge.net" ; rdfs:label "STEPS" . ### https://w3id.org/tvbo/software/Snudda rdf:type owl:NamedIndividual , ; "A Python tool for creating detailed neuronal network models with realistic 3D neuron placement, morphology, and connectivity using touch detection. Exports to NEURON via SONATA format." ; "GPL-3.0-only" ; "https://github.com/Hjorthmedansen/Snudda" ; "https://snudda.readthedocs.io" ; rdfs:label "Snudda" . ### https://w3id.org/tvbo/software/SpikeInterface rdf:type owl:NamedIndividual , ; "A unified framework for spike sorting, providing a common interface to many spike sorting algorithms, preprocessing tools, and quality metrics." ; "MIT" ; "https://github.com/SpikeInterface/spikeinterface" ; "10.7554/eLife.61834" ; "https://spikeinterface.readthedocs.io" ; rdfs:label "SpikeInterface" . ### https://w3id.org/tvbo/software/SpineCreator rdf:type owl:NamedIndividual , ; "A graphical tool for building neural network models using SpineML component-based descriptions, with export to multiple simulation engines." ; "GPL-3.0-only" ; "https://github.com/SpineML/SpineCreator" ; "https://spineml.github.io/spinecreator/" ; rdfs:label "SpineCreator" . ### https://w3id.org/tvbo/software/SpineML rdf:type owl:NamedIndividual , ; "A declarative XML-based language for describing spiking neural network models using a component-based approach. Designed for simulator independence." ; "BSD-3-Clause" ; "https://github.com/SpineML" ; "https://spineml.github.io" ; rdfs:label "SpineML" . ### https://w3id.org/tvbo/software/TVB rdf:type owl:NamedIndividual , ; "The Virtual Brain — a neuroinformatics platform for full-brain network simulation using neural mass and mean-field models on individual connectome data." ; "GPL-3.0-or-later" ; "https://github.com/the-virtual-brain/tvb-root" ; "10.3389/fninf.2013.00010" ; "https://www.thevirtualbrain.org" ; rdfs:label "TVB" . ### https://w3id.org/tvbo/software/TVB-O rdf:type owl:NamedIndividual , ; "The Virtual Brain Ontology — a Python library for knowledge representation, code generation, and simulation of large-scale brain network models. Integrates a LinkML-based ontology with JAX-accelerated numerical backends and interoperates with TVB, PyRates, NEURON, NEST, NeuroML, and NetworkDynamics.jl." ; "EUPL-1.2" ; "https://github.com/virtual-twin/tvbo" ; "10.1101/2025.11.19.689211" ; "https://tvbo.charite.de" ; rdfs:label "TVB-O" . ### https://w3id.org/tvbo/software/TVB-Optim rdf:type owl:NamedIndividual , ; "Differentiable whole-brain simulation and optimization framework using JAX. Supports gradient-based fitting of neural mass models to empirical neuroimaging data." ; "EUPL-1.2" ; "https://github.com/virtual-twin/tvboptim" ; "https://virtual-twin.github.io/tvboptim/" ; rdfs:label "TVB-Optim" . ### https://w3id.org/tvbo/software/jNeuroML rdf:type owl:NamedIndividual , ; "Java-based toolchain for NeuroML/LEMS model validation, simulation, and export to multiple simulator backends including NEURON, NEST, and Brian2." ; "LGPL-3.0-only" ; "https://github.com/NeuroML/jNeuroML" ; "https://docs.neuroml.org/Userdocs/Software/jNeuroML.html" ; rdfs:label "jNeuroML" . ### https://w3id.org/tvbo/software/jaxley rdf:type owl:NamedIndividual , ; "A differentiable simulator for biophysical neuron models built on JAX. Supports multi-compartment Hodgkin-Huxley models with automatic differentiation for gradient-based parameter inference." ; "Apache-2.0" ; "https://github.com/jaxleyverse/jaxley" ; "10.7554/eLife.99205" ; "https://jaxley.readthedocs.io" ; rdfs:label "jaxley" . ### https://w3id.org/tvbo/software/neuroConstruct rdf:type owl:NamedIndividual , ; "A graphical tool for constructing and simulating biologically realistic 3D neuronal networks with morphologically detailed cells. Exports to NEURON, GENESIS, and NeuroML." ; "GPL-2.0-only" ; "https://github.com/NeuralEnsemble/neuroConstruct" ; "http://www.neuroconstruct.org" ; rdfs:label "neuroConstruct" . ### https://w3id.org/tvbo/software/neurolib rdf:type owl:NamedIndividual , ; "A simulation framework for whole-brain neural mass models with built-in exploration, optimization, and fMRI/EEG forward-model support on empirical connectomes." ; "MIT" ; "https://github.com/neurolib-dev/neurolib" ; "10.1007/s12559-021-09931-9" ; "https://neurolib-dev.github.io/" ; rdfs:label "neurolib" . ### https://w3id.org/tvbo/software/pyNeuroML rdf:type owl:NamedIndividual , ; "Python API and command-line tools for NeuroML/LEMS model creation, validation, visualization, and simulation via jNeuroML and direct simulator backends." ; "LGPL-3.0-only" ; "https://github.com/NeuroML/pyNeuroML" ; "https://docs.neuroml.org/Userdocs/Software/pyNeuroML.html" ; rdfs:label "pyNeuroML" . ### https://w3id.org/tvbo/software/pynn_genn rdf:type owl:NamedIndividual , ; "PyNN interface for the GeNN GPU simulator, enabling PyNN models to run on NVIDIA GPUs via the GeNN backend." ; "GPL-2.0-only" ; "https://github.com/genn-team/pynn_genn" ; rdfs:label "pynn_genn" . ### https://w3id.org/tvbo/software/sPyNNaker rdf:type owl:NamedIndividual , ; "Software stack enabling PyNN models to execute on the SpiNNaker neuromorphic computing platform. Translates PyNN network descriptions into configurations for SpiNNaker's many-core ARM processors." ; "GPL-3.0-only" ; "https://github.com/SpiNNakerManchester/sPyNNaker" ; "https://spinnakermanchester.github.io" ; rdfs:label "sPyNNaker" . ### https://w3id.org/tvbo/studies/Abbott2005 rdf:type owl:NamedIndividual , ; "2005" ; "Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems" ; "Abbott, L. F." , "Dayan, Peter" ; "MIT Press" ; rdfs:label "Abbott2005" . ### https://w3id.org/tvbo/studies/Arnold1968 rdf:type owl:NamedIndividual , ; "1968" ; "Ergodic Problems of Classical Mechanics" ; "Arnol'd, V. I." , "Avez, A." ; "W. A. Benjamin" ; rdfs:label "Arnold1968" . ### https://w3id.org/tvbo/studies/Arnold1968a rdf:type owl:NamedIndividual , ; "1968" ; "Ergodic Problems of Classical Mechanics" ; "Arnol'd, V. I." , "Avez, A." ; "W. A. Benjamin" ; rdfs:label "Arnold1968a" . ### https://w3id.org/tvbo/studies/Bandyopadhyay2021 rdf:type owl:NamedIndividual , ; "2021" ; "K Ion Exchange model reference" ; "Bandyopadhyay, S." , "others" ; "Preprint" ; rdfs:label "Bandyopadhyay2021" . ### https://w3id.org/tvbo/studies/Baran1998 rdf:type owl:NamedIndividual , ; "1998" ; "Chaotic Dynamics in a Quartic Nuclear Collective Hamiltonian" ; "Baran, V." , "Raduta, A. A." ; "International Journal of Modern Physics E" ; "527--551" ; "7" ; rdfs:label "Baran1998" . ### https://w3id.org/tvbo/studies/Bo-Cheng2008 rdf:type owl:NamedIndividual , ; "2008" ; "A hyperchaotic attractor coined from chaotic L\"u system" ; "Bo-Cheng, B." , "Zhong, L." ; "Chinese Physics Letters" ; "7" ; "2396" ; "25" ; rdfs:label "Bo-Cheng2008" . ### https://w3id.org/tvbo/studies/BoCheng2008 rdf:type owl:NamedIndividual , ; "2008" ; "A hyperchaotic attractor coined from chaotic L\"u system" ; "Bo-Cheng, B." , "Zhong, L." ; "10.1088/0256-307x/25/7/018" ; "Chinese Physics Letters" ; "7" ; "2396" ; "25" ; rdfs:label "BoCheng2008" . ### https://w3id.org/tvbo/studies/Byrne2020 rdf:type owl:NamedIndividual , ; "2020" ; "Next generation neural mass models" ; "Byrne, A." , "Coombes, S." ; "Journal of Mathematical Neuroscience" ; rdfs:label "Byrne2020" . ### https://w3id.org/tvbo/studies/Cabral2011 rdf:type owl:NamedIndividual , ; "2011" ; "Role of local network oscillations in resting-state functional connectivity" ; "Cabral, Joana" , "others" ; "NeuroImage" ; rdfs:label "Cabral2011" . ### https://w3id.org/tvbo/studies/Cai2007 rdf:type owl:NamedIndividual , ; "2007" ; "A new finance chaotic attractor" ; "Cai, G." , "Huang, J." ; "International Journal of Nonlinear Science" ; "3" ; "213--220" ; "3" ; rdfs:label "Cai2007" . ### https://w3id.org/tvbo/studies/Cakan rdf:type owl:NamedIndividual , ; "Reference for network mean-field neural mass model" ; "Cakan, C." , "Obermayer, K." ; rdfs:label "Cakan" . ### https://w3id.org/tvbo/studies/Cao2013 rdf:type owl:NamedIndividual , ; "2013" ; "Bursting types and stable domains of Rulkov neuron network with mean field coupling" ; "Cao, H." , "Wu, Y." ; "International Journal of Bifurcation and Chaos" ; "1330041" ; "23" ; rdfs:label "Cao2013" . ### https://w3id.org/tvbo/studies/Chen2006 rdf:type owl:NamedIndividual , ; "2006" ; "Generating hyperchaotic L\"u attractor via state feedback control" ; "Chen, A." , "L\"u, J." , "Lu, J." , "Yu, S." ; "Physica A: Statistical Mechanics and its Applications" ; "103--110" ; "364" ; rdfs:label "Chen2006" . ### https://w3id.org/tvbo/studies/Chirikov1969 rdf:type owl:NamedIndividual , ; "1969" ; "Research concerning the theory of nonlinear resonance" ; "Chirikov, Boris V." ; "Preprint 267" ; rdfs:label "Chirikov1969" . ### https://w3id.org/tvbo/studies/Chua1992 rdf:type owl:NamedIndividual , ; "1992" ; "The Genesis of Chua's Circuit" ; "Chua, Leon O." ; "Archiv f\"ur Elektronik und \"Ubertragungstechnik" ; "250--257" ; "46" ; rdfs:label "Chua1992" . ### https://w3id.org/tvbo/studies/Chua2007 rdf:type owl:NamedIndividual , ; "2007" ; "Chua circuit" ; "Chua, Leon O." ; "Scholarpedia" ; "10" ; "1488" ; "http://www.scholarpedia.org/article/Chua_circuit" ; "2" ; rdfs:label "Chua2007" . ### https://w3id.org/tvbo/studies/Courtiol2020 rdf:type owl:NamedIndividual , ; "2020" ; "The brain resting state: dynamics and models" ; "Courtiol, Julie" , "others" ; "Journal of Neuroscience Methods" ; rdfs:label "Courtiol2020" . ### https://w3id.org/tvbo/studies/Datseris2019 rdf:type owl:NamedIndividual , ; "2019" ; "Abrupt Phase-Space Contraction in a Magnetotransport System" ; "Datseris, George" , "et al." ; "10.1088/1367-2630/ab19cc" ; "New Journal of Physics" ; "5" ; "053036" ; "21" ; rdfs:label "Datseris2019" . ### https://w3id.org/tvbo/studies/Deco2013 rdf:type owl:NamedIndividual , ; "2013" ; "Resting-State Functional Connectivity Emerges from Structurally and Dynamically Shaped Slow Linear Fluctuations" ; "Corbetta, M." , "Deco, G." , "Hagmann, P." , "Mantini, D." , "Ponce-Alvarez, A." , "Romani, G. 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Bard" , "Terman, David H." ; "Springer" ; rdfs:label "Ermentrout2010" . ### https://w3id.org/tvbo/studies/Feigenbaum1978 rdf:type owl:NamedIndividual , ; "1978" ; "Quantitative Universality for a Class of Nonlinear Transformations" ; "Feigenbaum, Mitchell J." ; "10.1007/bf01020332" ; "Journal of Statistical Physics" ; "25--52" ; "19" ; rdfs:label "Feigenbaum1978" . ### https://w3id.org/tvbo/studies/FitzHugh1961 rdf:type owl:NamedIndividual , ; "1961" ; "Impulses and physiological states in theoretical models of nerve membrane" ; "FitzHugh, Richard" ; "Biophysical Journal" ; rdfs:label "FitzHugh1961" . ### https://w3id.org/tvbo/studies/FitzHughNagumo rdf:type owl:NamedIndividual , ; "FitzHugh--Nagumo model" ; "10.4249/scholarpedia.1349" ; rdfs:label "FitzHughNagumo" . ### https://w3id.org/tvbo/studies/Freire2008 rdf:type owl:NamedIndividual , ; "2008" ; "Multistability, phase diagrams, and intransitivity in the Lorenz-84 low-order atmospheric circulation model" ; "Freire, Jos\\'e G." , "others" ; "Chaos" ; "033121" ; "18" ; rdfs:label "Freire2008" . ### https://w3id.org/tvbo/studies/Galan2008 rdf:type owl:NamedIndividual , ; "2008" ; "Optimal time scale for spike-time reliability: theory, simulations, and experiments" ; "Ermentrout, G. Bard" , "Gal\\'an, R. F." , "Urban, N. N." ; "Journal of Neurophysiology" ; rdfs:label "Galan2008" . ### https://w3id.org/tvbo/studies/Gast2020 rdf:type owl:NamedIndividual , ; "2020" ; "A mean-field description of bursting dynamics in neural populations" ; "Gast, Richard" , "Kn\\\"osche, T. R." , "Schmidt, Helmut" ; "PLOS Computational Biology" ; rdfs:label "Gast2020" . ### https://w3id.org/tvbo/studies/Gissinger2012 rdf:type owl:NamedIndividual , ; "2012" ; "A New Deterministic Model of Chaotic Reversals" ; "Gissinger, Christophe" ; "10.1140/epjb/e2012-30024-x" ; "The European Physical Journal B" ; "4" ; "137" ; "85" ; rdfs:label "Gissinger2012" . ### https://w3id.org/tvbo/studies/Grebogi1983 rdf:type owl:NamedIndividual , ; "1983" ; "Final state sensitivity: An obstruction to predictability" ; "Grebogi, Celso" , "McDonald, S. W." , "Ott, Edward" , "Yorke, James A." ; "Physics Letters A" ; "9" ; "373--375" ; "99" ; rdfs:label "Grebogi1983" . ### https://w3id.org/tvbo/studies/Greene1979 rdf:type owl:NamedIndividual , ; "1979" ; "A Method for Determining a Stochastic Transition" ; "Greene, J. 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L." , "Rose, R. M." ; "Proceedings of the Royal Society of London. Series B, Biological Sciences" ; "87--102" ; "221" ; rdfs:label "Hindmarsh1984" . ### https://w3id.org/tvbo/studies/HindmarshRose1984 rdf:type owl:NamedIndividual , ; "1984" ; "A model of neuronal bursting using three coupled first order differential equations" ; "Hindmarsh, J. L." , "Rose, R. M." ; "Proceedings of the Royal Society of London. Series B, Biological Sciences" ; "87--102" ; "221" ; rdfs:label "HindmarshRose1984" . ### https://w3id.org/tvbo/studies/Hodgkin1952 rdf:type owl:NamedIndividual , ; "1952" ; "A Quantitative Description of Membrane Current and Its Application to Conduction and Excitation in Nerve" ; "Hodgkin, A. L." , "Huxley, A. 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K." , "Kapitaniak, T." , "Mishra, A." , "Pal, P." , "Saha, S." , "Vigneshwaran, M." ; "10.1103/PhysRevE.97.062311" ; "Physical Review E" ; "6" ; "062311" ; "97" ; rdfs:label "Mishra2018" . ### https://w3id.org/tvbo/studies/Mishra2018a rdf:type owl:NamedIndividual , ; "2018" ; "Dragon-king-like extreme events in coupled bursting neurons" ; "Dana, S. 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C." , "Yorke, James A." ; "http://yorke.umd.edu/Yorke_papers_most_cited_and_post2000/1994_04_Ott_Alexander_Kan_Sommerer_PhysicaD_riddled%20basins.pdf" ; rdfs:label "OttRiddled2014" . ### https://w3id.org/tvbo/studies/Pang2011 rdf:type owl:NamedIndividual , ; "2011" ; "A new hyperchaotic system from the L\"u system and its control" ; "Liu, Y." , "Pang, S." ; "Journal of Computational and Applied Mathematics" ; "8" ; "2775--2789" ; "235" ; rdfs:label "Pang2011" . ### https://w3id.org/tvbo/studies/Proix2014 rdf:type owl:NamedIndividual , ; "2014" ; "A neural mass model of seizure initiation and propagation" ; "Proix, Timoth\\'ee" , "others" ; "Brain" ; rdfs:label "Proix2014" . ### https://w3id.org/tvbo/studies/Proix2017 rdf:type owl:NamedIndividual , ; "2017" ; "Individual structural connectivity defines propagation networks in partial epilepsy" ; "Proix, Timoth\\'ee" , "others" ; "Brain" ; rdfs:label "Proix2017" . ### https://w3id.org/tvbo/studies/Qi2008 rdf:type owl:NamedIndividual , ; "2008" ; "On a new hyperchaotic system" ; "Chen, G." , "Qi, G." , "van Wyk, B. J." , "van Wyk, M. A." ; "Physics Letters A" ; "2" ; "124--136" ; "372" ; rdfs:label "Qi2008" . ### https://w3id.org/tvbo/studies/R_ossler1976 rdf:type owl:NamedIndividual , ; "1976" ; "An Equation for Continuous Chaos" ; "R\"ossler, Otto E." ; "10.1016/0375-9601(76)90101-8" ; "Physics Letters A" ; "5" ; "397--398" ; "57" ; rdfs:label "R_ossler1976" . ### https://w3id.org/tvbo/studies/Rikitake1958 rdf:type owl:NamedIndividual , ; "1958" ; "Oscillations of a System of Disks" ; "Rikitake, Tsuneji" ; "10.1017/S0305004100033283" ; "Proceedings of the Cambridge Philosophical Society" ; "89--105" ; "54" ; rdfs:label "Rikitake1958" . ### https://w3id.org/tvbo/studies/Roessler1976 rdf:type owl:NamedIndividual , ; "1976" ; "An Equation for Continuous Chaos" ; "Roessler, Otto E." ; "10.1016/0375-9601(76)90101-8" ; "Physics Letters A" ; "5" ; "397--398" ; "57" ; rdfs:label "Roessler1976" . ### https://w3id.org/tvbo/studies/Roessler1979 rdf:type owl:NamedIndividual , ; "1979" ; "An equation for hyperchaos" ; "R\"ossler, Otto E." ; "Physics Letters A" ; "2--3" ; "155--157" ; "71" ; rdfs:label "Roessler1979" . ### https://w3id.org/tvbo/studies/Roessler1979Alias rdf:type owl:NamedIndividual , ; "Alias for Rossler1979" ; rdfs:label "Roessler1979Alias" . ### https://w3id.org/tvbo/studies/Rossler1976 rdf:type owl:NamedIndividual , ; "1976" ; "An Equation for Continuous Chaos" ; "R\"ossler, Otto E." ; "10.1016/0375-9601(76)90101-8" ; "Physics Letters A" ; "5" ; "397--398" ; "57" ; rdfs:label "Rossler1976" . ### https://w3id.org/tvbo/studies/Rossler1979 rdf:type owl:NamedIndividual , ; "1979" ; "An equation for hyperchaos" ; "R\"ossler, O. E." ; "Physics Letters A" ; "2--3" ; "155--157" ; "71" ; rdfs:label "Rossler1979" . ### https://w3id.org/tvbo/studies/Ruelle1980 rdf:type owl:NamedIndividual , ; "1980" ; "Strange Attractors" ; "Ruelle, David" ; "10.1007/BF03024089" ; "The Mathematical Intelligencer" ; "3" ; "126--137" ; "2" ; rdfs:label "Ruelle1980" . ### https://w3id.org/tvbo/studies/Rulkov2001 rdf:type owl:NamedIndividual , ; "2001" ; "Regularization of Synchronized Chaotic Bursts" ; "Abarbanel, Henry D. I." , "Rulkov, Nikolai F." , "Sushchik, M. M." , "Tsimring, L. S." ; "Physical Review Letters" ; "183" ; "86" ; rdfs:label "Rulkov2001" . ### https://w3id.org/tvbo/studies/Rulkov2002 rdf:type owl:NamedIndividual , ; "2002" ; "Modeling of spiking-bursting neural behavior using two-dimensional map" ; "Rulkov, Nikolai F." ; "Physical Review E" ; "041922" ; "65" ; rdfs:label "Rulkov2002" . ### https://w3id.org/tvbo/studies/Skiadas2008 rdf:type owl:NamedIndividual , ; "2008" ; "Chaotic Modelling and Simulation: Analysis of Chaotic Models, Attractors and Forms" ; "Skiadas, Christos H." ; "CRC Press" ; rdfs:label "Skiadas2008" . ### https://w3id.org/tvbo/studies/Sprott2010 rdf:type owl:NamedIndividual , ; "2010" ; "Elegant Chaos: Algebraically Simple Chaotic Flows" ; "Sprott, J. C." ; "10.1142/7434" ; "World Scientific" ; rdfs:label "Sprott2010" . ### https://w3id.org/tvbo/studies/Sprott2014 rdf:type owl:NamedIndividual , ; "2014" ; "Simplest Chaotic Flows with Involutional Symmetries" ; "Sprott, J. C." ; "International Journal of Bifurcation and Chaos" ; "1450009" ; "24" ; rdfs:label "Sprott2014" . ### https://w3id.org/tvbo/studies/Sprott2014b rdf:type owl:NamedIndividual , ; "2014" ; "Physics Letters A" ; "Sprott, J. C." ; "Physics Letters A" ; "378" ; rdfs:label "Sprott2014b" . ### https://w3id.org/tvbo/studies/Sprott2020 rdf:type owl:NamedIndividual , ; "2020" ; "Do We Need More Chaos Examples?" ; "Sprott, J. C." ; "Chaos Theory and Applications" ; "2" ; "1--3" ; "2" ; rdfs:label "Sprott2020" . ### https://w3id.org/tvbo/studies/SprottXiong2015 rdf:type owl:NamedIndividual , ; "2015" ; "Classifying and quantifying basins of attraction" ; "Sprott, J. C." , "Xiong, A." ; "Chaos: An Interdisciplinary Journal of Nonlinear Science" ; "8" ; "083101" ; "25" ; rdfs:label "SprottXiong2015" . ### https://w3id.org/tvbo/studies/Stankevich2012 rdf:type owl:NamedIndividual , ; "2012" ; "Hyperchaotic dynamics in a R\"ossler-like system" ; "Stankevich, N. V." ; rdfs:label "Stankevich2012" . ### https://w3id.org/tvbo/studies/Stommel1961 rdf:type owl:NamedIndividual , ; "1961" ; "Thermohaline convection with two stable regimes of flow" ; "Stommel, Henry" ; "Tellus" ; "2" ; "13" ; rdfs:label "Stommel1961" . ### https://w3id.org/tvbo/studies/Strogatz2000 rdf:type owl:NamedIndividual , ; "2000" ; "From Kuramoto to Crawford: exploring the onset of synchronization in populations of coupled oscillators" ; "Strogatz, Steven H." ; "Physica D" ; rdfs:label "Strogatz2000" . ### https://w3id.org/tvbo/studies/Strogatz2015 rdf:type owl:NamedIndividual , ; "2015" ; "Nonlinear Dynamics and Chaos: With Applications to Physics, Biology, Chemistry, and Engineering" ; "Strogatz, Steven H." ; "Westview Press" ; rdfs:label "Strogatz2015" . ### https://w3id.org/tvbo/studies/Thomas1999 rdf:type owl:NamedIndividual , ; "1999" ; "Deterministic chaos seen in terms of feedback circuits: Analysis, synthesis, \\& biological applications" ; "Thomas, Ren\\'e" ; "International Journal of Bifurcation and Chaos" ; "10" ; "1889--1905" ; "9" ; rdfs:label "Thomas1999" . ### https://w3id.org/tvbo/studies/Tufillaro1984 rdf:type owl:NamedIndividual , ; "1984" ; "Swinging Atwood's Machine" ; "Abbott, Tyler A." , "Griffiths, David J." , "Tufillaro, Nicholas B." ; "American Journal of Physics" ; "10" ; "895--903" ; "52" ; rdfs:label "Tufillaro1984" . ### https://w3id.org/tvbo/studies/Tufillaro1992 rdf:type owl:NamedIndividual , ; "1992" ; "An Experimental Approach to Nonlinear Dynamics and Chaos" ; "Abbott, Tyler" , "Reilly, James" , "Tufillaro, Nicholas B." ; "10.1119/1.17380" ; "Addison-Wesley" ; rdfs:label "Tufillaro1992" . ### https://w3id.org/tvbo/studies/Ueda1961 rdf:type owl:NamedIndividual , ; "1961" ; "Randomly Transitional Phenomena in the System Governed by Duffing's Equation" ; "Ueda, Yoshisuke" ; "Journal of Statistical Physics" ; rdfs:label "Ueda1961" . ### https://w3id.org/tvbo/studies/Ulam1960s rdf:type owl:NamedIndividual , ; "1960" ; "Ulam coupled map on a ring" ; "Ulam, Stanislaw" ; rdfs:label "Ulam1960s" . ### https://w3id.org/tvbo/studies/Volo2019 rdf:type owl:NamedIndividual , ; "2019" ; "Biophysical ingredients for a robust model of cortical dynamics" ; "di Volo, Matteo" , "others" ; "PLOS Computational Biology" ; rdfs:label "Volo2019" . ### https://w3id.org/tvbo/studies/Volo2019a rdf:type owl:NamedIndividual , ; "Alias for di Volo et al. 2019" ; rdfs:label "Volo2019a" . ### https://w3id.org/tvbo/studies/Wang2008 rdf:type owl:NamedIndividual , ; "2008" ; "A hyperchaos generated from Lorenz system" ; "Wang, M." , "Wang, X." ; "Physica A: Statistical Mechanics and its Applications" ; "14" ; "3751--3758" ; "387" ; rdfs:label "Wang2008" . ### https://w3id.org/tvbo/studies/Wang2009 rdf:type owl:NamedIndividual , ; "2009" ; "A 3-D four-wing attractor and its analysis" ; "Qi, G." , "Sun, Y." , "Wang, Z." , "van Wyk, B. J." , "van Wyk, M. A." ; "Brazilian Journal of Physics" ; "547--553" ; "39" ; rdfs:label "Wang2009" . ### https://w3id.org/tvbo/studies/Weisstein rdf:type owl:NamedIndividual , ; "Lotka-Volterra Equations" ; "Weisstein, Eric W." ; "https://mathworld.wolfram.com/Lotka-VolterraEquations.html" ; rdfs:label "Weisstein" . ### https://w3id.org/tvbo/studies/Wilson1972 rdf:type owl:NamedIndividual , ; "1972" ; "Excitatory and inhibitory interactions in localized populations of model neurons" ; "Cowan, Jack D." , "Wilson, Hugh R." ; "Biophysical Journal" ; rdfs:label "Wilson1972" . ### https://w3id.org/tvbo/studies/Wilson1973 rdf:type owl:NamedIndividual , ; "1973" ; "A mathematical theory of the functional dynamics of cortical and thalamic nervous tissue" ; "Cowan, Jack D." , "Wilson, Hugh R." ; "Biological Cybernetics" ; rdfs:label "Wilson1973" . ### https://w3id.org/tvbo/studies/Wong2006 rdf:type owl:NamedIndividual , ; "2006" ; "A Recurrent Network Mechanism of Time Integration in Perceptual Decisions" ; "Wang, Xiao-Jing" , "Wong, Kong-Fatt" ; "10.1523/jneurosci.3733-05.2006" ; "The Journal of Neuroscience" ; "4" ; "1314--1328" ; "Society for Neuroscience" ; "26" ; rdfs:label "Wong2006" . ### https://w3id.org/tvbo/studies/Zaslavskii1978 rdf:type owl:NamedIndividual , ; "1978" ; "The simplest case of a strange attractor" ; "Chernikov, A. A." , "Sagdeev, R. Z." , "Usikov, D. A." , "Zaslavskii, G. M." ; "Physics Letters A" ; "3" ; "145--147" ; "69" ; rdfs:label "Zaslavskii1978" . ### https://w3id.org/tvbo/studies/Zerlaut2018 rdf:type owl:NamedIndividual , ; "2018" ; "A mean-field model of conductance-based networks of adaptive exponential integrate-and-fire neurons" ; "Destexhe, Alain" , "Zerlaut, Yann" ; "Neural Computation" ; rdfs:label "Zerlaut2018" . ### https://w3id.org/tvbo/studies/Zetterberg1978 rdf:type owl:NamedIndividual , ; "1978" ; "A model for the interrelationship between EEG and evoked potentials" ; "Jansen, B. H." , "Zetterberg, L. H." ; "Biological Cybernetics" ; rdfs:label "Zetterberg1978" . ### https://w3id.org/tvbo/studies/vanderpol1926 rdf:type owl:NamedIndividual , ; "1926" ; "On relaxation-oscillations" ; "van der Pol, B." ; "The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science" ; "11" ; "978--992" ; "2" ; rdfs:label "vanderpol1926" . ################################################################# # Annotations ################################################################# rdfs:label "Chapter" . rdfs:label "Thesis" . rdfs:label "abbreviation" ; "Slot for the abbreviation of a resource." ; . rdfs:label "alternateName" ; "Enter any alternate names, including abbreviations, for this entity." ; . rdfs:label "anatomicalAxesOrientation" ; "Add the axes orientation in standard anatomical terms (XYZ)." ; . rdfs:label "author" ; . rdfs:label "axesOrigin" ; "Enter the origin (central point where all axes intersect)." ; . rdfs:label "color" ; "Add the color code used for visual representation of this entity." ; . rdfs:label "dataLocation" ; "Add the location of the data file containing the parcellation terminology." ; . rdfs:label "defaultImage" ; "Add all image files used as visual representation of this common coordinate space version." ; . rdfs:label "isVersionOf" ; "Linked type for the version of a brain atlas or coordinate space." ; . rdfs:label "license" ; "Linked type for the license of the brain atlas or coordinate space version." ; . rdfs:label "nativeUnit" ; "Add the native unit that is used for this common coordinate space version." ; . rdfs:label "ontologyIdentifier" ; "Enter the internationalized resource identifier (IRI) to the related ontological terms." ; . rdfs:label "relatedUBERONTerm" ; "Add the related anatomical entity as defined by the UBERON ontology." ; . rdfs:label "versionIdentifier" ; "Enter the version identifier of this brain atlas or coordinate space version." ; . xsd:string rdfs:label "string" . rdfs:label "Bistable"@en . rdfs:label "Bursting"@en . rdfs:label "Chaotic"@en . rdfs:comment "Aggregate input arriving at a node from connected nodes; modelled as the postsynaptic potential induced by long-range projections."@en ; rdfs:isDefinedBy ; rdfs:label "CouplingInput" ; rdfs:seeAlso ; "Specification of a coupling input channel for multi-coupling dynamics" ; ; ; "CouplingInput"@en . rdfs:label "Deterministic"@en . rdfs:label "Excitable"@en . rdfs:label "Fixed point"@en . rdfs:label "Homoclinic"@en . rdfs:label "Hopf"@en . rdfs:label "Limit cycle"@en . rdfs:label "Multistable"@en . rdfs:label "Oscillatory"@en . rdfs:label "Quiescent"@en . rdfs:label "Saddle-node"@en . rdfs:label "Strange attractor"@en . rdfs:label "Supercritical Hopf"@en . rdfs:label "Torus"@en . rdfs:label "accelerator (slot)" ; "Hardware accelerator: 'cpu', 'gpu', 'tpu'" ; ; "accelerator" . rdfs:label "acronym (slot)" ; ; "acronym" . rdfs:label "affect_parameters (slot)" ; "Parameter symbols modifiable in the affect function." ; ; "affect_parameters" . rdfs:label "affect_states (slot)" ; "State variable symbols modifiable in the affect function." ; ; "affect_states" . rdfs:label "average (slot)" ; "Averaging mode across trials. 'trials' = average over n_trials independent runs (evoked potential paradigm). None = return all trials." ; ; "average" . rdfs:label "bids_dir (slot)" ; "Path to BEP017-compliant BIDS directory for loading connectivity matrices" ; ; "bids_dir" . rdfs:label "cohort (slot)" ; "BIDS cohort- entity (e.g., HCPYA, PPMI85)" ; ; "cohort" . rdfs:label "comment (slot)" ; ; "comment" . rdfs:label "condition_parameters (slot)" ; "Parameter symbols accessible in the condition function." ; ; "condition_parameters" . rdfs:label "condition_states (slot)" ; "State variable symbols accessible in the condition function. For edges, can include source/destination vertex outputs." ; ; "condition_states" . rdfs:label "connectivity_ref (slot)" ; "Reference to connectivity data (_conndata-network_connectivity.tsv)." ; ; "connectivity_ref" . rdfs:label "dataLocation (slot)" ; ; "dataLocation" . rdfs:label "data_file (slot)" ; "Path to companion data file. Supported extensions: .h5 (HDF5), .zarr/ (Zarr), .csv (legacy single-matrix). Null if no companion data needed." ; ; "data_file" . rdfs:label "dataset_path (slot)" ; "Dataset path for array-valued parameters. When set, the parameter value is stored in the binary companion file (HDF5 or Zarr) at this path. The value slot is omitted." ; ; "dataset_path" . rdfs:label "date_created (slot)" ; "ISO 8601 (prov:generatedAtTime)" ; ; "date_created" . rdfs:label "default (slot)" ; ; "default" . rdfs:label "definition (slot)" ; ; "definition" . rdfs:label "derived_from (slot)" ; ; "derived_from" . rdfs:label "description (slot)" ; ; "description" . rdfs:label "descriptor (slot)" ; "Short alphanumeric identifier for the BIDS desc- filename entity (e.g., SC, FC, EC, SCFC). Classifies the connectivity modality of the network's edge measures." ; ; "descriptor" . rdfs:label "dimension_labels (slot)" ; "Ordered labels for the matrix columns (dim-1) when the matrix is non-square. Row labels (dim-0) are the parent Network's node labels. Stored as HDF5 dimension scales in the companion file." ; ; "dimension_labels" . rdfs:label "doi (slot)" ; ; "doi" . rdfs:label "elements (slot)" ; "Connectivity (indices) or file reference to topology." ; ; "elements" . rdfs:label "equation_type (slot)" ; "Type of equation: 'differential' (default) means dx/dt = rhs, 'algebraic' means 0 = rhs or x ~ rhs (DAE constraint). Algebraic equations are used by ModelingToolkit.jl backend." ; ; "equation_type" . rdfs:label "extension (slot)" ; ; "extension" . rdfs:label "generated_by (slot)" ; "Software/agent identifier (prov:wasGeneratedBy)" ; ; "generated_by" . rdfs:label "geometry (slot)" ; "Optional file for geometry/ROI mask (e.g., NIfTI, GIfTI)." ; ; "geometry" . rdfs:label "groups (slot)" ; ; "groups" . rdfs:label "has_reference (slot)" ; ; "has_reference" . rdfs:label "hemi (slot)" ; "BIDS hemi- entity (L or R) for hemisphere-specific surface/volume data" ; ; "hemi" . rdfs:label "keys (slot)" ; "Named keys for multi-dimensional coupling. When dimension > 1, provides symbolic names for each index (e.g., keys: [lre, ffi] for dimension: 2). Used in equations as variable names." ; ; "keys" . rdfs:label "label (slot)" ; ; "label" . rdfs:label "labels_dimensions (slot)" ; "Mapping of dimension names to their labels (JSON-encoded dict)." ; ; "labels_dimensions" . rdfs:label "labels_ordering (slot)" ; "Ordering of dimensions: Time, State Variable, Space, Mode." ; ; "labels_ordering" . rdfs:label "learning_rate_schedule (slot)" ; "Learning rate schedule: 'constant', 'linear', 'exponential'" ; ; "learning_rate_schedule" . rdfs:label "lefthandside (slot)" ; ; "lefthandside" ; "lhs" . rdfs:label "license (slot)" ; ; "license" . rdfs:label "mesh_file (slot)" ; "Path to external mesh file (GIFTI, VTK, MSH, FreeSurfer, etc.)." ; ; "mesh_file" . rdfs:label "mesh_format (slot)" ; "Explicit format override (gifti, freesurfer, meshio, vtk, gmsh). Auto-detected from extension if null." ; ; "mesh_format" . rdfs:label "mode (slot)" ; "Combination mode: 'product' (full grid), 'zip' (paired)" ; ; "mode" . rdfs:label "model_equation_ref (slot)" ; "BIDS ModelEq reference: path to _eq.xml LEMS file." ; ; "model_equation_ref" . rdfs:label "model_param_ref (slot)" ; "BIDS ModelParam reference: path to _param.xml LEMS file." ; ; "model_param_ref" . rdfs:label "module (slot)" ; ; "module" . rdfs:label "name (slot)" ; "Globally unique identifier for the entity." , "Optional step label; used in pipelines to key step outputs." ; , ; "name" . rdfs:label "node_mapping (slot)" ; "HDF5 dataset path for node-to-parent mapping. Int32 array of shape (N,) where entry i is the parent node ID. Required when parent_network is set." ; ; "node_mapping" . rdfs:label "noise_type (slot)" ; ; "noise_type" . rdfs:label "observational_measures (slot)" ; "BEP017 measure names for observational targets (e.g., BoldCorrelation)" ; ; "observational_measures" . rdfs:label "on_region (slot)" ; "Mesh/atlas subset where BC applies." ; ; "on_region" . rdfs:label "outsym (slot)" ; "Output symbol names for the edge model. E.g. ['P'] for a scalar power flow, ['Fx', 'Fy'] for 2D forces. Maps directly to outsym in ND.jl EdgeModel. If not specified, derived from coupling variables of the connected vertex dynamics." ; ; "outsym" . rdfs:label "parent_network (slot)" ; "Path/URI to parent (coarser) Network. When set, this network is a refinement where each node maps to exactly one parent node via node_mapping." ; ; "parent_network" . rdfs:label "precision (slot)" ; "Floating point precision: 'float32' or 'float64'" ; ; "precision" . rdfs:label "preconditioner (slot)" ; ; "preconditioner" . rdfs:label "processing_pipeline (slot)" ; "Processing pipeline used to generate the tractography" ; ; "processing_pipeline" . rdfs:label "quantity_kind (slot)" ; "Scalar, vector, or tensor." ; ; "quantity_kind" . rdfs:label "reconstruction (slot)" ; "BIDS rec- entity (e.g., dTOR)" ; ; "reconstruction" . rdfs:label "reference (slot)" ; "Publication or DOI reference for this tractography dataset" ; ; "reference" . rdfs:label "references (slot)" ; ; "references" . rdfs:label "righthandside (slot)" ; ; "righthandside" ; "rhs" . rdfs:label "sampling_period_unit (slot)" ; "Unit of the sampling period (e.g., 'ms', 's')." ; ; "sampling_period_unit" . rdfs:label "scale (slot)" ; "BIDS scale- entity (BEP017, e.g., 1000)" ; ; "scale" . rdfs:label "segmentation (slot)" ; "BIDS seg- entity (e.g., ordered, ranked, 17Networks)" ; ; "segmentation" . rdfs:label "session_id (slot)" ; "BIDS session identifier." ; ; "session_id" . rdfs:label "source (slot)" ; ; "source" . rdfs:label "source_branch (slot)" ; "Name of a previously computed branch (for from_branch method)." ; ; "source_branch" . rdfs:label "source_var (slot)" ; "Output variable from source node to use (e.g., 'x_out'). If not specified, uses first output variable from source dynamics." ; ; "source_var" . rdfs:label "structural_measures (slot)" ; "BEP017 measure names for structural connectivity (e.g., streamlineCount, tractLength)" ; ; "structural_measures" . rdfs:label "subject_id (slot)" ; "BIDS subject identifier." ; ; "subject_id" . rdfs:label "symbol (slot)" ; ; "symbol" . rdfs:label "symmetry (slot)" ; "Edge symmetry type for NetworkDynamics.jl EdgeModel: 'directed' (default), 'antisymmetric', or 'symmetric'. AntiSymmetric edges flip sign for the reverse direction." ; ; "symmetry" . rdfs:label "target_component (slot)" ; "Component to attach this event to. Can be a node label, edge label, or 'all_edges'/'all_vertices' for broadcast. If not specified, event is experiment-level." ; ; "target_component" . rdfs:label "target_network (slot)" ; "Path or name of the Network whose nodes define the columns of a non-square (projection) matrix. For example, a gain matrix with shape (n_sensors, n_regions) references the brain parcellation network here. Row labels come from the parent Network's own nodes." ; ; "target_network" . rdfs:label "target_var (slot)" ; "Input variable on target node to connect to (e.g., 'c_in'). If not specified, uses first coupling input from target dynamics." ; ; "target_var" . rdfs:label "task_name (slot)" ; "BIDS task name for the simulation (e.g., 'rest', 'simulation')." ; ; "task_name" . rdfs:label "template (slot)" ; "BIDS tpl- entity (e.g., FSLMNI152, MNI152NLin2009cAsym)" ; ; "template" . rdfs:label "time_integrator (slot)" ; "e.g., implicit Euler, Crank-Nicolson." ; ; "time_integrator" . rdfs:label "title (slot)" ; ; "title" . rdfs:label "tolerances (slot)" ; "Abs/rel tolerances." ; ; "tolerances" . rdfs:label "unit (slot)" ; "Physical unit of measurement. Values are drawn from the QUDT ontology (http://qudt.org/vocab/unit/) with UO cross-references where available." ; ; "unit" . rdfs:label "value (slot)" ; "Numeric, string, or boolean value. ScalarValue accepts any literal primitive type, allowing parameters to carry control flags (e.g., booleans) or symbolic placeholders alongside numeric defaults." ; ; "value" . rdfs:label "acronym (dbs)" ; "Short abbreviation (e.g., UPDRS)" ; ; "acronym" . rdfs:label "description (dbs)" ; ; "description" . rdfs:label "diagnosis (dbs)" ; ; "diagnosis" . rdfs:label "electrode_id (dbs)" ; "Unique identifier for this electrode" ; ; "electrode_id" . rdfs:label "evaluator (dbs)" ; "Who performed the rating (e.g., rater initials, clinician ID, or system)" ; ; "evaluator" . rdfs:label "handedness (dbs)" ; ; "handedness" . rdfs:label "hemisphere (dbs)" ; "Hemisphere of electrode (left/right)" ; ; "hemisphere" . rdfs:label "label (dbs)" ; "Optional human-readable label (e.g., \"1a\")" ; ; "label" . rdfs:label "manufacturer (dbs)" ; ; "manufacturer" . rdfs:label "mode (dbs)" ; ; "mode" . rdfs:label "model (dbs)" ; ; "model" . rdfs:label "name (dbs)" ; "Full name of the scale (e.g., Unified Parkinson’s Disease Rating Scale)" , "Full name of the score (e.g., Unified Parkinson's Disease Rating Scale - Part III)" ; ; "name" . rdfs:label "notes (dbs)" ; ; "notes" . rdfs:label "recon_path (dbs)" ; ; "recon_path" . rdfs:label "reference (dbs)" ; "DOI, PMID or persistent identifier" , "PubMed ID, DOI, or other reference to the score definition" ; ; "reference" . rdfs:label "timepoint (dbs)" ; "Timepoint of assessment (e.g., \"1 month post-op\", \"6 months post-op\")" ; ; "timepoint" . rdfs:label "timing_info (dbs)" ; ; "timing_info" . rdfs:label "version (dbs)" ; "Version of the instrument (e.g., 3.0)" ; ; "version" . rdfs:label "volume_data (dbs)" ; "Reference to raw or thresholded volume" ; ; "volume_data" . rdfs:label "application_category (software)" ; "High-level category (e.g., simulation, analysis, specification)." ; ; "application_category" . rdfs:label "author (software)" ; "Original author(s) or creating organization(s)." ; ; "author" . rdfs:label "build_hash (software)" ; "Deterministic hash of the resolved dependency set." ; ; "build_hash" . rdfs:label "citation (software)" ; "Additional citation strings or DOIs." ; ; "citation" . rdfs:label "container_image (software)" ; "Container image reference (e.g., ghcr.io/org/img:tag@sha256:...)." ; ; "container_image" . rdfs:label "description (software)" ; ; "description" . rdfs:label "doi (software)" ; "Digital Object Identifier for the software or its reference publication." ; ; "doi" . rdfs:label "funder (software)" ; "Funding bodies or grants (e.g., 'EU H2020 945539', 'NIH R01...')." ; ; "funder" . rdfs:label "hash (software)" ; "Build or artifact hash for exact reproducibility." ; ; "hash" . rdfs:label "keywords (software)" ; "Tags for topic-based discovery and clustering." ; ; "keywords" . rdfs:label "label (software)" ; ; "label" . rdfs:label "license (software)" ; "SPDX license identifier (e.g., MIT, GPL-3.0-only)." ; ; "license" . rdfs:label "maintainer (software)" ; "Current maintainer(s) or responsible organization(s)." ; ; "maintainer" . rdfs:label "modules (software)" ; "(Deprecated) Use environment.requirements list instead." ; ; "modules" . rdfs:label "operating_system (software)" ; "Supported operating systems (e.g., Linux, macOS, Windows)." ; ; "operating_system" . rdfs:label "platform (software)" ; "OS / architecture (e.g., linux-64, macos-arm64)." ; ; "platform" . rdfs:label "reference_publication (software)" ; "DOI of the primary reference publication for this tool." ; ; "reference_publication" . rdfs:label "runtime_platform (software)" ; "Execution backends or platforms (e.g., MPI, OpenMP, CUDA, JAX)." ; ; "runtime_platform" . rdfs:label "source_url (software)" ; "Canonical source or repository URL." ; ; "source_url" . rdfs:label "url (software)" ; "(Deprecated) Use source_url." ; ; "url" . rdfs:label "version_spec (software)" ; "Version or constraint specifier (e.g., '==2.7.3', '>=1.2,<2')." ; ; "version_spec" . rdfs:label "bids_root (study)" ; "Path to BIDS dataset root directory. When set, subject networks and empirical data paths are resolved relative to this root." ; ; "bids_root" . rdfs:label "condition (study)" ; "Experimental condition label (e.g., 'rest', 'task-nback'). Maps to BIDS 'task-' entity." ; ; "condition" . rdfs:label "conditions (study)" ; "Global condition labels applied across all subjects (e.g., ['rest', 'task-nback', 'task-motor'])." ; ; "conditions" . rdfs:label "dataset_id (study)" ; "Unique identifier for the dataset." ; ; "dataset_id" . rdfs:label "description (study)" ; ; "description" . rdfs:label "empirical_data (study)" ; "Paths to empirical recordings for this session (e.g., BOLD time series, MEG/EEG). Relative to dataset root." ; ; "empirical_data" . rdfs:label "group (study)" ; "Group assignment (e.g., 'control', 'patient', 'healthy'). Maps to participants.tsv 'group' column in BIDS." ; ; "group" . rdfs:label "label (study)" ; "Human-readable dataset name." , "Human-readable label for the subject." , "Human-readable session label." ; ; "label" . rdfs:label "metadata (study)" ; "Additional subject metadata as key-value pairs or path to a sidecar JSON file." ; ; "metadata" . rdfs:label "reference (study)" ; "DOI or citation for this dataset." ; ; "reference" . rdfs:label "session_id (study)" ; "BIDS session identifier (without 'ses-' prefix). Examples: 'baseline', '6month', 'pre', 'post'." ; ; "session_id" . rdfs:label "subject_id (study)" ; "BIDS-compatible subject identifier (without 'sub-' prefix). Examples: '01', 'ctrl03', 'patient17'." ; ; ; "subject_id" . ### Generated by the OWL API (version 5.1.18) https://github.com/owlcs/owlapi/