# Class: Network _Network specification with nodes, edges, and reusable coupling configurations. Supports both explicit node/edge representation and matrix-based connectivity (Connectome compatibility)._
URI: [tvbo:Network](https://w3id.org/tvbo/Network) ```{mermaid} classDiagram class Network click Network href "./Network.html" Network : bids Network --> "0..1" BidsEntities : bids click BidsEntities href "./BidsEntities.html" Network : bids_dir Network --> "0..1" String : bids_dir click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : coordinate_space Network --> "0..1" CommonCoordinateSpace : coordinate_space click CommonCoordinateSpace href "./CommonCoordinateSpace.html" Network : coupling Network --> "*" Coupling : coupling click Coupling href "./Coupling.html" Network : data_file Network --> "0..1" String : data_file click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : description Network --> "0..1" String : description click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : descriptor Network --> "0..1" String : descriptor click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : distance_unit Network --> "0..1" UnitEnum : distance_unit click UnitEnum href "../../enums/UnitEnum.html" Network : dynamics Network --> "*" Dynamics : dynamics click Dynamics href "./Dynamics.html" Network : edge_matrix_files Network --> "*" File : edge_matrix_files click File href "./File.html" Network : edge_template Network --> "0..1" Edge : edge_template click Edge href "./Edge.html" Network : edges Network --> "*" Edge : edges click Edge href "./Edge.html" Network : graph_generator Network --> "0..1" GraphGenerator : graph_generator click GraphGenerator href "./GraphGenerator.html" Network : graph_representation Network --> "0..1" GraphRepresentation : graph_representation click GraphRepresentation href "../../enums/GraphRepresentation.html" Network : integration Network --> "0..1" Integrator : integration click Integrator href "./Integrator.html" Network : label Network --> "0..1" String : label click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : mesh Network --> "0..1" Mesh : mesh click Mesh href "./Mesh.html" Network : node_mapping Network --> "0..1" String : node_mapping click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : node_template Network --> "0..1" Node : node_template click Node href "./Node.html" Network : nodes Network --> "*" Node : nodes click Node href "./Node.html" Network : number_of_nodes Network --> "0..1" Integer : number_of_nodes click Integer href "../http://www.w3.org/2001/XMLSchema#integer.html" Network : observational_measures Network --> "*" String : observational_measures click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : parameters Network --> "*" Parameter : parameters click Parameter href "./Parameter.html" Network : parcellation Network --> "0..1" Parcellation : parcellation click Parcellation href "./Parcellation.html" Network : parent_network Network --> "0..1" String : parent_network click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : primary_weight Network --> "0..1" String : primary_weight click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : provenance Network --> "0..1" Provenance : provenance click Provenance href "./Provenance.html" Network : structural_measures Network --> "*" String : structural_measures click String href "../http://www.w3.org/2001/XMLSchema#string.html" Network : time_unit Network --> "0..1" UnitEnum : time_unit click UnitEnum href "../../enums/UnitEnum.html" Network : tractogram Network --> "0..1" Tractogram : tractogram click Tractogram href "./Tractogram.html" Network : transforms Network --> "*" Function : transforms click Function href "./Function.html" ``` ## Class Properties | Property | Value | | --- | --- | | Class URI | [tvbo:Network](https://w3id.org/tvbo/Network) | ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [label](../slots/label.qmd) | 0..1
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | | direct | | [description](../slots/description.qmd) | 0..1
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | | direct | | [parameters](../slots/parameters.qmd) | *
[Parameter](../classes/Parameter.qmd) | | direct | | [provenance](../slots/provenance.qmd) | 0..1
[Provenance](../classes/Provenance.qmd) | W3C PROV-O aligned provenance for this entity — what it was derived from, whi... | direct | | [time_unit](../slots/time_unit.qmd) | 0..1
[UnitEnum](../enums/UnitEnum.qmd) | Unit of every time-valued number in this scope — the step size, any period, a... | direct | | [integration](../slots/integration.qmd) | 0..1
[Integrator](../classes/Integrator.qmd) | Clock this network's nodes run on | direct | | [nodes](../slots/nodes.qmd) | *
[Node](../classes/Node.qmd) | List of nodes with individual dynamics (optional, for heterogeneous networks) | direct | | [edges](../slots/edges.qmd) | *
[Edge](../classes/Edge.qmd) | List of directed edges with coupling references (optional, for explicit edge ... | direct | | [primary_weight](../slots/primary_weight.qmd) | 0..1
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | Name of the edge group that should serve as the canonical weights matrix when... | direct | | [coupling](../slots/coupling.qmd) | *
[Coupling](../classes/Coupling.qmd) | How activity travels along this network's connections — the one place a coupl... | direct | | [graph_representation](../slots/graph_representation.qmd) | 0..1
[GraphRepresentation](../enums/GraphRepresentation.qmd) | Representation used to evaluate coupling over this network's connectivity (``... | direct | | [dynamics](../slots/dynamics.qmd) | *
[Dynamics](../classes/Dynamics.qmd) | Dictionary of dynamics models keyed by name | direct | | [node_template](../slots/node_template.qmd) | 0..1
[Node](../classes/Node.qmd) | Default Node attributes applied to every Node in this Network | direct | | [edge_template](../slots/edge_template.qmd) | 0..1
[Edge](../classes/Edge.qmd) | Default Edge attributes applied to every Edge in this Network | direct | | [number_of_nodes](../slots/number_of_nodes.qmd) | 0..1
[xsd:integer](http://www.w3.org/2001/XMLSchema#integer) | Number of nodes in the network (derived from nodes if not set) | direct | | [coordinate_space](../slots/coordinate_space.qmd) | 0..1
[CommonCoordinateSpace](../classes/CommonCoordinateSpace.qmd) | Coordinate space for node positions (e | direct | | [parcellation](../slots/parcellation.qmd) | 0..1
[Parcellation](../classes/Parcellation.qmd) | Brain parcellation/atlas reference | direct | | [tractogram](../slots/tractogram.qmd) | 0..1
[Tractogram](../classes/Tractogram.qmd) | Reference to tractography data | direct | | [mesh](../slots/mesh.qmd) | 0..1
[Mesh](../classes/Mesh.qmd) | Optional triangle mesh geometry | direct | | [transforms](../slots/transforms.qmd) | *
[Function](../classes/Function.qmd) | Ordered list of transforms applied to edge property matrices | direct | | [data_file](../slots/data_file.qmd) | 0..1
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | Path to companion data file | direct | | [descriptor](../slots/descriptor.qmd) | 0..1
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | Short alphanumeric identifier for the BIDS desc- filename entity (e | direct | | [bids_dir](../slots/bids_dir.qmd) | 0..1
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | Path to BEP017-compliant BIDS directory for loading connectivity matrices | direct | | [bids](../slots/bids.qmd) | 0..1
[BidsEntities](../classes/BidsEntities.qmd) | BIDS filename entities for this dataset | direct | | [structural_measures](../slots/structural_measures.qmd) | *
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | BEP017 measure names for structural connectivity (e | direct | | [observational_measures](../slots/observational_measures.qmd) | *
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | BEP017 measure names for observational targets (e | direct | | [parent_network](../slots/parent_network.qmd) | 0..1
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | Path/URI to parent (coarser) Network | direct | | [node_mapping](../slots/node_mapping.qmd) | 0..1
[xsd:string](http://www.w3.org/2001/XMLSchema#string) | HDF5 dataset path for node-to-parent mapping | direct | | [distance_unit](../slots/distance_unit.qmd) | 0..1
[UnitEnum](../enums/UnitEnum.qmd) | Unit for distances/lengths in the network | direct | | [edge_matrix_files](../slots/edge_matrix_files.qmd) | *
[File](../classes/File.qmd) | | direct | | [graph_generator](../slots/graph_generator.qmd) | 0..1
[GraphGenerator](../classes/GraphGenerator.qmd) | Graph generator specification | direct | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [Node](../classes/Node.qmd) | [subnetwork](../slots/subnetwork.qmd) | range | [Network](../classes/Network.qmd) | | [Coupling](../classes/Coupling.qmd) | [regional_connectivity](../slots/regional_connectivity.qmd) | range | [Network](../classes/Network.qmd) | | [SimulationExperiment](../classes/SimulationExperiment.qmd) | [connectivity](../slots/connectivity.qmd) | range | [Network](../classes/Network.qmd) | | [SimulationExperiment](../classes/SimulationExperiment.qmd) | [network](../slots/network.qmd) | range | [Network](../classes/Network.qmd) | ## Aliases * Network * Connectome * Graph * Connectivity ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/tvbo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | tvbo:Network | | native | tvbo:Network | ## LinkML Source ### Direct
```yaml name: Network description: Network specification with nodes, edges, and reusable coupling configurations. Supports both explicit node/edge representation and matrix-based connectivity (Connectome compatibility). from_schema: https://w3id.org/tvbo aliases: - Network - Connectome - Graph - Connectivity slots: - label - description - parameters - provenance - time_unit attributes: integration: name: integration description: 'Clock this network''s nodes run on. A subnetwork declaring its own is how a finer scale runs on a finer step than its parent: the fold reads both and converts between their `time_unit`, since a factor of 1000 living only in a modeller''s head is invisible in every backend''s output.' from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network - Optimization - Inference - SimulationExperiment range: Integrator inlined: true nodes: name: nodes description: List of nodes with individual dynamics (optional, for heterogeneous networks) from_schema: https://w3id.org/tvbo domain_of: - Event - Network range: Node multivalued: true inlined_as_list: true edges: name: edges description: List of directed edges with coupling references (optional, for explicit edge definition) from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: Edge multivalued: true inlined_as_list: true primary_weight: name: primary_weight description: Name of the edge group that should serve as the canonical weights matrix when ``weights_matrix`` is queried. Lets a single Network sidecar bundle several connectivity variants (e.g. band-specific NMF reweightings, distance-modulated SC, shuffled controls) under different edge names while still presenting one of them as the active weight to consumers (simulators, observation pipelines). Defaults to ``weight`` / ``weights`` / ``sc`` lookup when not set. from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: string coupling: name: coupling description: How activity travels along this network's connections — the one place a coupling function is declared, because a coupling acts over a connectivity and has no meaning without one. Keyed by the role each plays in the network ('excitatory', 'delayed', 'inhibitory'), so a network may carry several and an edge names the one it uses. A network with a single coupling applies it to every edge. from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network - Edge range: Coupling multivalued: true inlined: true graph_representation: name: graph_representation description: Representation used to evaluate coupling over this network's connectivity (``auto`` | ``dense`` | ``sparse``). ``auto`` lets the backend choose by connection density. This names whether to exploit edge sparsity, not a concrete data structure, so it is backend-independent; the delayed-vs-instantaneous graph kind is decided separately from the couplings' conduction delays. from_schema: https://w3id.org/tvbo rank: 1000 ifabsent: string(auto) domain_of: - Network range: GraphRepresentation dynamics: name: dynamics description: Dictionary of dynamics models keyed by name. Nodes reference these by name. For heterogeneous networks with per-node dynamics. from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network - Node - Edge - Observation - Continuation - SimulationExperiment range: Dynamics multivalued: true inlined: true node_template: name: node_template description: Default Node attributes applied to every Node in this Network. Explicit entries in `nodes:` override the template field-by-field (shallow replace, same semantics as `dict.update`). Reserved per-Node slots (id, label, position, region) come from the data backbone (Network.iri-loaded parcellation or procedural generator) and are ignored if set on the template. Lets a homogeneous Network declare its per-Node configuration once without enumerating regions. from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: Node required: false inlined: true edge_template: name: edge_template description: Default Edge attributes applied to every Edge in this Network. Explicit entries in `edges:` override the template field-by-field. Reserved per-Edge slots (source, target, weight, delay, distance) come from the data backbone (loaded matrix or procedural generator) and are ignored if set on the template. from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: Edge required: false inlined: true number_of_nodes: name: number_of_nodes description: Number of nodes in the network (derived from nodes if not set) from_schema: https://w3id.org/tvbo aliases: - number_of_nodes - number_of_regions rank: 1000 domain_of: - Network range: integer coordinate_space: name: coordinate_space description: Coordinate space for node positions (e.g., MNI152NLin2009c). Mirrors BrainAtlas.coordinateSpace so network node positions are unambiguous. from_schema: https://w3id.org/tvbo domain_of: - DBSDataset - DBSSubject - Electrode - EField - Network - SpatialDomain - Mesh range: CommonCoordinateSpace inlined: true parcellation: name: parcellation description: Brain parcellation/atlas reference from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network - Mesh range: Parcellation inlined: true tractogram: name: tractogram description: Reference to tractography data from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: Tractogram inlined: true mesh: name: mesh description: Optional triangle mesh geometry. When set, the Network carries triangle faces (and optionally normals, curvature) alongside its node coordinates. Used by surface-based observations (cortical wave detection, Helmholtz-Hodge decomposition, spectrospatial mode analysis). Mesh face data lives in the same h5 companion under a ``mesh/`` group. from_schema: https://w3id.org/tvbo domain_of: - Surface - Network - SpatialField - FieldStateVariable - PDE range: Mesh inlined: true transforms: name: transforms description: Ordered list of transforms applied to edge property matrices. Each entry's `name:` is the edge property it rewrites (e.g. 'weight', 'length'), and that property is also the value under transform inside the entry's own equation, which is written over the network's edge attributes. Supports equation-based (symbolic) or callable-based (software) transforms. Multiple transforms on the same target are applied sequentially, each seeing the previous one's output. from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: Function multivalued: true inlined_as_list: true data_file: name: data_file description: 'Path to companion data file. Supported extensions: .h5 (HDF5), .zarr/ (Zarr), .csv (legacy single-matrix). Null if no companion data needed.' from_schema: https://w3id.org/tvbo domain_of: - ExperimentResultSidecar - Phenotype - Network range: string descriptor: name: descriptor description: Short alphanumeric identifier for the BIDS desc- filename entity (e.g., SC, FC, EC, SCFC). Classifies the connectivity modality of the network's edge measures. from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: string bids_dir: name: bids_dir description: Path to BEP017-compliant BIDS directory for loading connectivity matrices from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: string bids: name: bids description: BIDS filename entities for this dataset from_schema: https://w3id.org/tvbo domain_of: - StudyDirectory - StudyFile - Network range: BidsEntities inlined: true structural_measures: name: structural_measures description: BEP017 measure names for structural connectivity (e.g., streamlineCount, tractLength) from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: string multivalued: true observational_measures: name: observational_measures description: BEP017 measure names for observational targets (e.g., BoldCorrelation) from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: string multivalued: true parent_network: name: parent_network description: Path/URI to parent (coarser) Network. When set, this network is a refinement where each node maps to exactly one parent node via node_mapping. from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: string node_mapping: name: node_mapping description: HDF5 dataset path for node-to-parent mapping. Int32 array of shape (N,) where entry i is the parent node ID. Required when parent_network is set. from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: string distance_unit: name: distance_unit description: Unit for distances/lengths in the network from_schema: https://w3id.org/tvbo rank: 1000 ifabsent: string(mm) domain_of: - Network range: UnitEnum edge_matrix_files: name: edge_matrix_files from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: File multivalued: true graph_generator: name: graph_generator description: 'Graph generator specification. When set, overrides explicit edges/nodes for graph construction. The type field is a free string; StandardGraphType lists well-known types that get automatic code generation across backends. ' from_schema: https://w3id.org/tvbo rank: 1000 domain_of: - Network range: GraphGenerator inlined: true class_uri: tvbo:Network ```
### Induced
```yaml name: Network description: Network specification with nodes, edges, and reusable coupling configurations. Supports both explicit node/edge representation and matrix-based connectivity (Connectome compatibility). from_schema: https://w3id.org/tvbo aliases: - Network - Connectome - Graph - Connectivity attributes: integration: name: integration description: 'Clock this network''s nodes run on. A subnetwork declaring its own is how a finer scale runs on a finer step than its parent: the fold reads both and converts between their `time_unit`, since a factor of 1000 living only in a modeller''s head is invisible in every backend''s output.' from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network - Optimization - Inference - SimulationExperiment range: Integrator inlined: true nodes: name: nodes description: List of nodes with individual dynamics (optional, for heterogeneous networks) from_schema: https://w3id.org/tvbo owner: Network domain_of: - Event - Network range: Node multivalued: true inlined: true inlined_as_list: true edges: name: edges description: List of directed edges with coupling references (optional, for explicit edge definition) from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: Edge multivalued: true inlined: true inlined_as_list: true primary_weight: name: primary_weight description: Name of the edge group that should serve as the canonical weights matrix when ``weights_matrix`` is queried. Lets a single Network sidecar bundle several connectivity variants (e.g. band-specific NMF reweightings, distance-modulated SC, shuffled controls) under different edge names while still presenting one of them as the active weight to consumers (simulators, observation pipelines). Defaults to ``weight`` / ``weights`` / ``sc`` lookup when not set. from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: string coupling: name: coupling description: How activity travels along this network's connections — the one place a coupling function is declared, because a coupling acts over a connectivity and has no meaning without one. Keyed by the role each plays in the network ('excitatory', 'delayed', 'inhibitory'), so a network may carry several and an edge names the one it uses. A network with a single coupling applies it to every edge. from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network - Edge range: Coupling multivalued: true inlined: true graph_representation: name: graph_representation description: Representation used to evaluate coupling over this network's connectivity (``auto`` | ``dense`` | ``sparse``). ``auto`` lets the backend choose by connection density. This names whether to exploit edge sparsity, not a concrete data structure, so it is backend-independent; the delayed-vs-instantaneous graph kind is decided separately from the couplings' conduction delays. from_schema: https://w3id.org/tvbo rank: 1000 ifabsent: string(auto) owner: Network domain_of: - Network range: GraphRepresentation dynamics: name: dynamics description: Dictionary of dynamics models keyed by name. Nodes reference these by name. For heterogeneous networks with per-node dynamics. from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network - Node - Edge - Observation - Continuation - SimulationExperiment range: Dynamics multivalued: true inlined: true node_template: name: node_template description: Default Node attributes applied to every Node in this Network. Explicit entries in `nodes:` override the template field-by-field (shallow replace, same semantics as `dict.update`). Reserved per-Node slots (id, label, position, region) come from the data backbone (Network.iri-loaded parcellation or procedural generator) and are ignored if set on the template. Lets a homogeneous Network declare its per-Node configuration once without enumerating regions. from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: Node required: false inlined: true edge_template: name: edge_template description: Default Edge attributes applied to every Edge in this Network. Explicit entries in `edges:` override the template field-by-field. Reserved per-Edge slots (source, target, weight, delay, distance) come from the data backbone (loaded matrix or procedural generator) and are ignored if set on the template. from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: Edge required: false inlined: true number_of_nodes: name: number_of_nodes description: Number of nodes in the network (derived from nodes if not set) from_schema: https://w3id.org/tvbo aliases: - number_of_nodes - number_of_regions rank: 1000 owner: Network domain_of: - Network range: integer coordinate_space: name: coordinate_space description: Coordinate space for node positions (e.g., MNI152NLin2009c). Mirrors BrainAtlas.coordinateSpace so network node positions are unambiguous. from_schema: https://w3id.org/tvbo owner: Network domain_of: - DBSDataset - DBSSubject - Electrode - EField - Network - SpatialDomain - Mesh range: CommonCoordinateSpace inlined: true parcellation: name: parcellation description: Brain parcellation/atlas reference from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network - Mesh range: Parcellation inlined: true tractogram: name: tractogram description: Reference to tractography data from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: Tractogram inlined: true mesh: name: mesh description: Optional triangle mesh geometry. When set, the Network carries triangle faces (and optionally normals, curvature) alongside its node coordinates. Used by surface-based observations (cortical wave detection, Helmholtz-Hodge decomposition, spectrospatial mode analysis). Mesh face data lives in the same h5 companion under a ``mesh/`` group. from_schema: https://w3id.org/tvbo owner: Network domain_of: - Surface - Network - SpatialField - FieldStateVariable - PDE range: Mesh inlined: true transforms: name: transforms description: Ordered list of transforms applied to edge property matrices. Each entry's `name:` is the edge property it rewrites (e.g. 'weight', 'length'), and that property is also the value under transform inside the entry's own equation, which is written over the network's edge attributes. Supports equation-based (symbolic) or callable-based (software) transforms. Multiple transforms on the same target are applied sequentially, each seeing the previous one's output. from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: Function multivalued: true inlined: true inlined_as_list: true data_file: name: data_file description: 'Path to companion data file. Supported extensions: .h5 (HDF5), .zarr/ (Zarr), .csv (legacy single-matrix). Null if no companion data needed.' from_schema: https://w3id.org/tvbo owner: Network domain_of: - ExperimentResultSidecar - Phenotype - Network range: string descriptor: name: descriptor description: Short alphanumeric identifier for the BIDS desc- filename entity (e.g., SC, FC, EC, SCFC). Classifies the connectivity modality of the network's edge measures. from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: string bids_dir: name: bids_dir description: Path to BEP017-compliant BIDS directory for loading connectivity matrices from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: string bids: name: bids description: BIDS filename entities for this dataset from_schema: https://w3id.org/tvbo owner: Network domain_of: - StudyDirectory - StudyFile - Network range: BidsEntities inlined: true structural_measures: name: structural_measures description: BEP017 measure names for structural connectivity (e.g., streamlineCount, tractLength) from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: string multivalued: true observational_measures: name: observational_measures description: BEP017 measure names for observational targets (e.g., BoldCorrelation) from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: string multivalued: true parent_network: name: parent_network description: Path/URI to parent (coarser) Network. When set, this network is a refinement where each node maps to exactly one parent node via node_mapping. from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: string node_mapping: name: node_mapping description: HDF5 dataset path for node-to-parent mapping. Int32 array of shape (N,) where entry i is the parent node ID. Required when parent_network is set. from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: string distance_unit: name: distance_unit description: Unit for distances/lengths in the network from_schema: https://w3id.org/tvbo rank: 1000 ifabsent: string(mm) owner: Network domain_of: - Network range: UnitEnum edge_matrix_files: name: edge_matrix_files from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: File multivalued: true graph_generator: name: graph_generator description: 'Graph generator specification. When set, overrides explicit edges/nodes for graph construction. The type field is a free string; StandardGraphType lists well-known types that get automatic code generation across backends. ' from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Network range: GraphGenerator inlined: true label: name: label from_schema: https://w3id.org/tvbo rank: 1000 slot_uri: rdfs:label owner: Network domain_of: - ParcellationTerminology - Subject - Session - Dataset - Contact - SoftwareEnvironment - Figure - Panel - Inset - Layer - Colorbar - Rule - Equation - Stimulus - Event - Parcellation - Tractogram - Matrix - Phenotype - Network - Node - Edge - Observation - Dynamics - StateVariable - Parameter - Function - FunctionCall - DerivedVariable - RandomStream - DataSource - OptimizationStage - Exploration - ExplorationAxis - FreeParameter - Inference - AlgorithmStage - TuningObjective - Continuation - Coupling - RegionMapping - SimulationExperiment - SimulationStudy - TimeSeries - NDArray - SpatialDomain - Mesh - SpatialField - FieldStateVariable - DifferentialOperator - BoundaryCondition - PDESolver - PDE range: string description: name: description from_schema: https://w3id.org/tvbo rank: 1000 slot_uri: dcterms:description owner: Network domain_of: - CommonCoordinateSpace - Dataset - StudyLayout - StudyTemplate - StudyDirectory - StudyFile - ClinicalScore - SoftwarePackage - SoftwareRequirement - SoftwareEnvironment - Figure - Panel - Equation - Stimulus - Event - Tractogram - Matrix - ResultEntity - Activity - Phenotype - MeasureSpec - NamedArray - Network - GraphGenerator - ProcedureStep - File - Node - Edge - Observation - Dynamics - StateVariable - Parameter - CouplingInput - Argument - Function - FunctionCall - Callable - DerivedParameter - DerivedVariable - RandomStream - DataSource - OptimizationStage - Exploration - ExplorationAxis - FreeParameter - Inference - Prior - Likelihood - UpdateRule - AlgorithmStage - TuningObjective - Algorithm - BranchSwitch - Continuation - Integrator - Coupling - RegionMapping - SimulationExperiment - Study - ResultBinding - TimeSeries - NDArray - SpatialDomain - Mesh - SpatialField - FieldStateVariable - BoundaryCondition - PDESolver - PDE - Reducer range: string parameters: name: parameters from_schema: https://w3id.org/tvbo rank: 1000 owner: Network domain_of: - Equation - Stimulus - Event - ExperimentResultSidecar - Network - GraphGenerator - Node - Edge - Observation - Analysis - Dynamics - Distribution - Noise - Exploration - Discretization - BranchSwitch - Integrator - Coupling - PDE range: Parameter multivalued: true inlined: true provenance: name: provenance description: W3C PROV-O aligned provenance for this entity — what it was derived from, which agent produced it, and when. from_schema: https://w3id.org/tvbo close_mappings: - prov:wasGeneratedBy rank: 1000 owner: Network domain_of: - Figure - ResultEntity - ExperimentResultSidecar - Phenotype - Network - SimulationExperiment range: Provenance inlined: true time_unit: name: time_unit description: 'Unit of every time-valued number in this scope — the step size, any period, and the physical meaning of one model time-step. Declared at whichever scope owns the clock (network, integrator, observation); `tvbo.utils.units.time_unit_of` resolves a scope to its effective unit by walking outwards, and states the `ms` fallback once, at the end of that walk. Deliberately carries no default: a defaulted slot cannot be inherited through, so `ifabsent: ms` made an unset unit indistinguishable from one someone wrote, and masked an explicitly declared `s` one scope out. `time_scale` is accepted as a synonym.' from_schema: https://w3id.org/tvbo aliases: - time_scale rank: 1000 owner: Network domain_of: - Network - Observation - Integrator range: UnitEnum class_uri: tvbo:Network ```